New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2716742 =154 (0.840)12 (0.070) 11/232 NT 7.2% intergenic (+50/+100) USA300HOU_RS13965/USA300HOU_RS13970 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2716816 = 168 (1.010)intergenic (+124/+26) USA300HOU_RS13965/USA300HOU_RS13970 hypothetical protein/hypothetical protein

Only 100 of 251 total aligned reads displayed.

CACAATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTT  >  USA300TCH1516_ALE/2716602‑2716882
                                                                                                                                            |                                                                                                                                            
cacaATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA                                                                                                                                              <  1:424115‑M1/141‑1 (MQ=255)
cacaATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA                                                                                                                                              <  1:1066427‑M1/141‑1 (MQ=255)
cacaATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA                                                                                                                                              <  1:925173‑M1/141‑1 (MQ=255)
cacaATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA                                                                                                                                              >  2:1064994‑M1/1‑141 (MQ=255)
cacaATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA                                                                                                                                              >  2:94125‑M1/1‑141 (MQ=255)
cacaATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACA                                                                                                                                              >  2:1231885‑M1/1‑141 (MQ=255)
  caATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAA                                                                                                                                            >  2:643491‑M1/1‑141 (MQ=255)
  agtgaaagaagcgggtggcacagtcgttcaagaaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaaaa                                                                                                                                            >  3:410648‑M1/139‑141 (MQ=255)
  agtgaaagaagcgggtggcacagtcgttcaagaaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaaaa                                                                                                                                            >  1:1447109‑M1/139‑141 (MQ=255)
    tgaaagaagcgggtggcacagtcgttcaagaaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGc                                                                                                                                          >  1:688093‑M1/137‑141 (MQ=255)
     tAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCC                                                                                                                                         <  2:350548‑M1/141‑1 (MQ=255)
     gaaagaagcgggtggcacagtcgttcaagaaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGcc                                                                                                                                         >  4:186732‑M1/136‑141 (MQ=255)
     gaaagaagcgggtggcacagtcgttcaagaaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGcc                                                                                                                                         >  2:1292163‑M1/136‑141 (MQ=255)
         gaagcgggtggcacagtcgttcaagaaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATa                                                                                                                                     <  2:314053‑M1/10‑1 (MQ=255)
         aGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATA                                                                                                                                     <  3:635498‑M1/141‑1 (MQ=255)
         aGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATA                                                                                                                                     <  1:621260‑M1/141‑1 (MQ=255)
          gTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC                                                                                                                                    >  1:1651848‑M1/1‑141 (MQ=255)
          gTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATAC                                                                                                                                    >  1:35538‑M1/1‑141 (MQ=255)
            ggTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg                                                                                                                                  >  1:1462130/1‑141 (MQ=255)
            ggTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTg                                                                                                                                  <  1:1305175/141‑1 (MQ=255)
               tGATCCAATCGGTCAGGATGTCACACCAGATAAAGGTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGAtt                                                                                                                               >  4:66200/1‑141 (MQ=255)
                  cccAATCGTGCAGGAGGTCACACCAGTTAATGTGTATTATCTTCGCCAACAATACGGTTATAGTCAAAATTAATAGTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGaa                                                                                                                            <  1:908326/140‑1 (MQ=255)
                     aaTCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATAGGGTTATATTCAAAATTAATATTTGCTCATGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATGGAAGaa                                                                                                                         >  1:198882/1‑140 (MQ=255)
                        cGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACt                                                                                                                      <  4:412448/141‑1 (MQ=255)
                          gTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTaa                                                                                                                    <  2:609852/141‑1 (MQ=255)
                               gATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATgtgt                                                                                                               <  1:546113/141‑1 (MQ=255)
                                aTGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTc                                                                                                              >  1:268720/1‑141 (MQ=255)
                                 tGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCg                                                                                                             <  2:1354141/141‑1 (MQ=255)
                                  gTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc                                                                                                            <  1:499656/141‑1 (MQ=255)
                                  gTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc                                                                                                            <  2:1520812/141‑1 (MQ=255)
                                  gTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGc                                                                                                            <  1:1591962/141‑1 (MQ=255)
                                  aaccaacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagcataaataaAAAGCNCATACTGATTGANGACACTAATGTGTCGc                                                                                                            >  1:954916‑M1/107‑141 (MQ=255)
                                   tCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGATGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCa                                                                                                           <  2:715083/141‑1 (MQ=255)
                                   tCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCa                                                                                                           <  1:1566924/141‑1 (MQ=255)
                                    cacaCCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCAc                                                                                                          <  1:1202575/141‑1 (MQ=255)
                                     caacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCAcc                                                                                                         <  1:1500256‑M1/38‑1 (MQ=255)
                                     caacagtaagccaagggttttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCAcc                                                                                                         >  1:658873‑M1/104‑141 (MQ=255)
                                        ccAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgc                                                                                                      >  1:295242‑M1/1‑111 (MQ=255)
                                            aTAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGc                                                                                                  <  2:685369/141‑1 (MQ=255)
                                              aaaGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGcac                                                                                                >  3:392308/1‑141 (MQ=255)
                                              aaaGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGcac                                                                                                >  2:1621176/1‑141 (MQ=255)
                                              aaaGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGcac                                                                                                <  3:77890/141‑1 (MQ=255)
                                               aaGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGcaca                                                                                               <  4:37136/141‑1 (MQ=255)
                                                aGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACAt                                                                                              >  3:167785/1‑141 (MQ=255)
                                                   ttATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTAc                                                                                           <  1:1408783/141‑1 (MQ=255)
                                                     aTGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGc                                                                                         >  1:1423235/1‑141 (MQ=255)
                                                       tttatggagcaatgttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaacaaA‑‑GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGc                                                                                         <  2:1567323‑M1/52‑1 (MQ=255)
                                                           ttCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtc                                                                                   >  1:537754/1‑141 (MQ=255)
                                                            tCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCAtct                                                                                  >  3:496522/1‑141 (MQ=255)
                                                            tCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACAATGGTGCACATTACGCTTCAtct                                                                                  >  1:1037224/1‑141 (MQ=255)
                                                              gCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatca                                                                                <  1:1163824‑M1/141‑53 (MQ=255)
                                                                caacaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgt                                                                              <  2:1052332‑M2/141‑3 (MQ=255)
                                                                  acaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat                                                                            <  3:158682‑M2/141‑5 (MQ=255)
                                                                  acaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat                                                                            <  3:580322‑M2/141‑5 (MQ=255)
                                                                  acaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat                                                                            >  1:819008‑M2/1‑137 (MQ=255)
                                                                   caaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAAGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatg                                                                           <  3:545093‑M2/141‑6 (MQ=255)
                                                                    aaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgg                                                                          >  2:1097726‑M2/1‑135 (MQ=255)
                                                                     ttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATggg                                                                         >  2:756027‑M1/72‑141 (MQ=255)
                                                                      tACGGTGATATTCAAAACTAATATTTGCTCACGAGGTATTGCACTGAAGGTGCCAACTGACCTCATAAACAAAGCCCATCCagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagtatgggc                                                                        <  4:612963‑M1/141‑61 (MQ=255)
                                                                        cGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctt                                                                      <  1:1007733‑M2/141‑11 (MQ=255)
                                                                         ggTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggcttt                                                                     >  2:716269‑M2/1‑130 (MQ=255)
                                                                         ggTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggcttt                                                                     <  2:432012‑M2/141‑12 (MQ=255)
                                                                              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                <  2:59297/141‑1 (MQ=255)
                                                                              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                <  1:1522052/141‑1 (MQ=255)
                                                                              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTtttatt                                                                <  2:1606656/141‑1 (MQ=255)
                                                                                      aTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCttt                                                        >  4:584140/1‑141 (MQ=255)
                                                                                      aTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCttt                                                        <  2:249919/141‑1 (MQ=255)
                                                                                         aaTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTga                                                     >  1:441358/1‑141 (MQ=255)
                                                                                         aaTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTga                                                     >  1:1328686/1‑141 (MQ=255)
                                                                                           tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTgaga                                                   <  1:147958/141‑1 (MQ=255)
                                                                                            atTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGaa                                                  <  2:487463/141‑1 (MQ=255)
                                                                                             tttGCTCACGAGGTATTGGACGTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt                                                 <  1:13497/141‑1 (MQ=255)
                                                                                             tttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAt                                                 <  3:366612/141‑1 (MQ=255)
                                                                                              ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACagagatgaagcgtaatgtgcaccatggtgcgacacattagtgtcttcaatcagta                                                                             <  4:22189‑M1/112‑56 (MQ=255)
                                                                                              ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAtt                                                >  2:116636/1‑141 (MQ=255)
                                                                                               tGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAAttt                                               >  1:1632092/1‑141 (MQ=255)
                                                                                                gCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTc                                              >  3:222764/1‑141 (MQ=255)
                                                                                                   cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCAtt                                           >  1:1138200/1‑141 (MQ=255)
                                                                                                      gAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTa                                        >  1:961434/1‑141 (MQ=255)
                                                                                                        ggTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGc                                      <  2:982748/141‑1 (MQ=255)
                                                                                                         gTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCACATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGCATGGGCTTTTTATTTATTCTTTTGAGACTTTCATCTTAGCa                                     >  2:1424226/1‑141 (MQ=255)
                                                                                                              gCACTTAAGGTGCCAACTGACCTAATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCa                                <  4:104948/141‑1 (MQ=255)
                                                                                                               cACTTAAGGGGCCAACTGGCCTCATAAACAAAGCTCATACTTATTGAAGACACTAATGTGTCTCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaa                               <  1:1575601/141‑1 (MQ=255)
                                                                                                                  ttAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaaaa                            <  2:874119/141‑1 (MQ=255)
                                                                                                                     aGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAtt                         >  4:380484/1‑141 (MQ=255)
                                                                                                                     aGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCCCTGTATGGGCTTTTTATTTATTCTTTTGAGAATCTCATTTTAGCAGACCAAAAAAtt                         >  2:936252/1‑141 (MQ=255)
                                                                                                                      ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                        >  1:770515/1‑141 (MQ=255)
                                                                                                                       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaa                       >  2:1641731/1‑141 (MQ=255)
                                                                                                                             aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt                 >  1:805501/1‑141 (MQ=255)
                                                                                                                             aCTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGgt                 >  1:690892/1‑141 (MQ=255)
                                                                                                                                  ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa            <  3:46358/141‑1 (MQ=255)
                                                                                                                                  ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa            >  1:399164/1‑141 (MQ=255)
                                                                                                                                   cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCGGACCAAAAAATTAAAATGGTGTCCAt           >  2:1434798/1‑141 (MQ=255)
                                                                                                                                    tCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATc          <  1:796039/141‑1 (MQ=255)
                                                                                                                                      aTAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCaa        <  3:311134/141‑1 (MQ=255)
                                                                                                                                       tAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAg       <  4:545093/141‑1 (MQ=255)
                                                                                                                                          aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATc    <  1:127807/141‑1 (MQ=255)
                                                                                                                                           cAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCt   >  2:553473/1‑141 (MQ=255)
                                                                                                                                            AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt  >  2:970327‑M1/1‑141 (MQ=255)
                                                                                                                                            AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt  <  2:441965‑M1/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CACAATAAAAGTGGTTGATCCAATCGGTCAGGATGTCACACCAGATAAAGTTTATGATCTTCGCCAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTATTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTT  >  USA300TCH1516_ALE/2716602‑2716882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.