New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2872577193 (1.060)15 (0.090) 12/232 NT 7.5% intergenic (‑113/+14) rnpA/rpmH Ribonuclease P protein component/50S ribosomal protein L34
?USA300TCH1516_ALE = 2872581 193 (1.160)intergenic (‑117/+10) rnpA/rpmH Ribonuclease P protein component/50S ribosomal protein L34

Only 100 of 270 total aligned reads displayed.

TCTTTTTAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTA  >  USA300TCH1516_ALE/2872437‑2872717
                                                                                                                                             |                                                                                                                                             
tCTTTTTAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGA                                                                                                                                               <  2:1272752‑M1/141‑1 (MQ=255)
 cTTTTTAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACtgat                                                                                                                                             <  3:377789/141‑1 (MQ=255)
     ttAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGActcat                                                                                                                                          <  1:609398‑M1/141‑6 (MQ=255)
     ttAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGt                                                                                                                                         >  1:1174167‑M2/1‑140 (MQ=255)
        aTTCTGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGActcatcag                                                                                                                                       <  1:1203273‑M1/141‑9 (MQ=255)
        aTTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGActcatcag                                                                                                                                       <  1:440662‑M1/141‑9 (MQ=255)
        aTTCGGTAAGCTTTTTCCAATAACATCACTAGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGtcag                                                                                                                                      <  2:1488764‑M2/141‑5 (MQ=255)
         ttCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACAAAAAAAAAGATCACTGATGAGtcagt                                                                                                                                     >  2:906808‑M2/1‑136 (MQ=255)
            ggTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGActcatcagtgat                                                                                                                                   <  1:161723‑M1/141‑13 (MQ=255)
             gTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGActcatcagtgat                                                                                                                                   <  1:1323677‑M1/141‑13 (MQ=255)
              ttctcattttccaataACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGActcatcagtgatct                                                                                                                                 <  2:1306814‑M1/135‑15 (MQ=255)
                aGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTa                                                                                                                              <  1:67172/141‑1 (MQ=255)
                  cTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATg                                                                                                                            <  1:55509/141‑1 (MQ=255)
                      ttCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGACTCAtcagtgatcttttttttc                                                                                                                        >  4:347139‑M2/1‑123 (MQ=255)
                         cAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATaa                                                                                                                     <  3:649127/141‑1 (MQ=255)
                           aTAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATaaaa                                                                                                                   <  1:956280/141‑1 (MQ=255)
                                aTCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAAATTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTa                                                                                                              >  4:199785/1‑141 (MQ=255)
                                   aCTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACgg                                                                                                           >  3:308471/1‑141 (MQ=255)
                                    cttgtatatttatCGTTTTTTTGTTGAGCTATATTTTATTTTTTATTCATCTTATAACATAAATTTCTATTTATTCTTAATAAAAACAAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGc                                                                                                          <  2:562291/135‑1 (MQ=255)
                                    cTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATTAGTCAGTGATCTTATGCAGATAAAACTTTACGGc                                                                                                          >  1:148171/1‑141 (MQ=255)
                                         ttatttatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTa                                                                                                     >  1:775869/1‑141 (MQ=255)
                                            tttatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTtcgt                                                                                                  >  3:502798/1‑140 (MQ=255)
                                             ttatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTacgac                                                                                                 >  1:1542525/1‑141 (MQ=255)
                                              tatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTacgacg                                                                                                >  1:267326/1‑141 (MQ=255)
                                              tatCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTacgacg                                                                                                >  3:354945/1‑141 (MQ=255)
                                                  gTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACgg                                                                                            >  1:511835/1‑141 (MQ=255)
                                                     ttttATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGgcg                                                                                          <  1:611293/141‑1 (MQ=255)
                                                       ttATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGgcgcc                                                                                        >  4:473472/1‑140 (MQ=255)
                                                        tATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGACTCAcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgtta                                                                                         >  1:755557‑M2/1‑91 (MQ=255)
                                                        tATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGgcgcgc                                                                                       <  4:150347/141‑1 (MQ=255)
                                                         aTTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCt                                                                                      <  1:930422/141‑1 (MQ=255)
                                                            tGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAATTTTACGGCCTTTACGAAGACGGCGCGCTaaa                                                                                   >  1:1136034/1‑141 (MQ=255)
                                                            tGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaa                                                                                   >  2:1423673/1‑141 (MQ=255)
                                                            tGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAAATTAAACGAAAACAAAGCTCACTGATGAGTCCGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaa                                                                                   <  1:992912/141‑1 (MQ=255)
                                                             gAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaaa                                                                                  >  3:218615/1‑141 (MQ=255)
                                                             gAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTaaaa                                                                                  >  4:216135/1‑141 (MQ=255)
                                                               aGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATGCTTAATTTAACCGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACt                                                                                >  2:964059/1‑141 (MQ=255)
                                                                gCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGAtgagtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctca                                                                                >  1:663142‑M1/1‑78 (MQ=255)
                                                                   atatTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTAc                                                                            <  1:460888/141‑1 (MQ=255)
                                                                    tatTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACg                                                                           >  3:704786/1‑141 (MQ=255)
                                                                        tAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCa                                                                       <  2:1144502/141‑1 (MQ=255)
                                                                          aaCTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAtt                                                                     >  2:624108/1‑141 (MQ=255)
                                                                          aaCTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAtt                                                                     >  1:1446679/1‑141 (MQ=255)
                                                                             ttCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAttttt                                                                  <  2:11842/141‑1 (MQ=255)
                                                                              tCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCAtttttt                                                                 >  2:103357/1‑141 (MQ=255)
                                                                                 aTTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtgtg                                                              >  4:597498/1‑141 (MQ=255)
                                                                                 aTTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTtgtg                                                              >  2:788238/1‑141 (MQ=255)
                                                                                  ttGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTac                                                                                                    <  1:1429303/102‑1 (MQ=255)
                                                                                      gCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGAtgagtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttttaagctcaatagaagtttatatatagcttt                                                          >  2:1377776‑M1/1‑56 (MQ=255)
                                                                                      gCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCAt                                                         <  4:238649/141‑1 (MQ=255)
                                                                                      gCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCAt                                                         <  1:116959/141‑1 (MQ=255)
                                                                                      gCTTATAACATAAATGTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCAt                                                         >  3:175861/1‑141 (MQ=255)
                                                                                        ttATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGc                                                       <  4:640084/141‑1 (MQ=255)
                                                                                           taACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGtt                                                    >  2:712022/1‑141 (MQ=255)
                                                                                              cATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTc                                                 <  1:306804/141‑1 (MQ=255)
                                                                                                   aTTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGaaa                                            >  1:1489330/1‑141 (MQ=255)
                                                                                                   aTTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGaaa                                            <  2:1633508/141‑1 (MQ=255)
                                                                                                   aTTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTATGCTCATGCGTTTTCTGaaa                                            >  2:1220030/1‑141 (MQ=255)
                                                                                                     ttCTATTTATTCTTAATTAAAAATAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAAcc                                          <  4:375780/141‑1 (MQ=255)
                                                                                                       cTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCAt                                        <  1:448933/141‑1 (MQ=255)
                                                                                                       cTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCAt                                        >  4:547452/1‑141 (MQ=255)
                                                                                                        tatttattCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATg                                       <  2:1482433/141‑1 (MQ=255)
                                                                                                        tatttattCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATg                                       <  1:408872/141‑1 (MQ=255)
                                                                                                        tatttattCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACAGCGCGCTAAAACTTTACGACCATTTTTTATGCTCATGCGTTTTCTGAAACCATg                                       >  2:484680/1‑141 (MQ=255)
                                                                                                             attCTTAATTTAAACGAAAAAAAAGATCACTGAtgagtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttaaaataaaaacgataaataagcga                                   >  1:1262269‑M1/1‑33 (MQ=255)
                                                                                                                  tAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACtt                             >  2:440628/1‑140 (MQ=255)
                                                                                                                   aaTTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTAt                            >  1:1080236/1‑141 (MQ=255)
                                                                                                                      ttAAACGAAAAAAAAGATCACTGATGATTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGtt                         <  4:451831/141‑1 (MQ=255)
                                                                                                                      ttAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGtt                         >  4:529003/1‑141 (MQ=255)
                                                                                                                        aaaCGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTa                       >  4:75971/1‑141 (MQ=255)
                                                                                                                          aCGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACg                     <  2:686520/141‑1 (MQ=255)
                                                                                                                          aCGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACg                     >  1:101718/1‑141 (MQ=255)
                                                                                                                          aCGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACg                     <  2:1446679/141‑1 (MQ=255)
                                                                                                                           ggAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAGACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCAATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGt                    <  2:348382/140‑1 (MQ=255)
                                                                                                                           cGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGCACTTTACTATGTTTACGt                    >  1:197621/1‑141 (MQ=255)
                                                                                                                           cGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGt                    <  1:1501128/141‑1 (MQ=255)
                                                                                                                            gAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGtt                   <  4:397322/141‑1 (MQ=255)
                                                                                                                               aaaaaaGATCACTGATNAGTCAGTGATCTNATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTAt                >  3:412812/1‑141 (MQ=255)
                                                                                                                               aaaaaaGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTAt                >  2:832471/1‑141 (MQ=255)
                                                                                                                               aaaaaaGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTAt                <  2:1540620/141‑1 (MQ=255)
                                                                                                                                 aaaaGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTAttt              <  1:735429/141‑1 (MQ=255)
                                                                                                                                   aaGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTgg            >  2:498481/1‑141 (MQ=255)
                                                                                                                                   aaGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTgg            <  1:974376/141‑1 (MQ=255)
                                                                                                                                   aaGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTgg            >  2:859540/1‑141 (MQ=255)
                                                                                                                                   aaGATCACTGATGAGTCAGTGATCGTATTCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACGTTACGGCCATGTTTTGTGCTCATGCGTTTTCTGAAACCACGAACTTTACTATGTTTACGTTTAGTTgg            >  1:1582451/1‑141 (MQ=255)
                                                                                                                                     gATCACTGATGAGtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgtatttggaaaaagcttac          <  1:207987‑M2/141‑129 (MQ=255)
                                                                                                                                      aTCACTGActcatcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttacc          <  2:408872‑M1/141‑134 (MQ=255)
                                                                                                                                       tcactcactcatcagtgttcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccg         <  3:276464‑M1/141‑135 (MQ=255)
                                                                                                                                       tCACTGActcatcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccg         >  2:1463439‑M1/1‑7 (MQ=255)
                                                                                                                                       tCACTGActcatcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccg         <  3:118632‑M1/141‑135 (MQ=255)
                                                                                                                                       tCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGa        >  2:1598024/1‑141 (MQ=255)
                                                                                                                                       tCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGa        >  1:1220719/1‑141 (MQ=255)
                                                                                                                                       tCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGa        <  2:33366/141‑1 (MQ=255)
                                                                                                                                            gatgaGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGt   <  1:248897/141‑1 (MQ=255)
                                                                                                                                            gActcatcagtgatcttttttttcttttattttaagaataaatagaaatttatgttataatctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgtaattgtaaaaagcttacctaattt    >  2:1120724‑M1/1‑2 (MQ=255)
                                                                                                                                            gActcatcagtgatcttttttttcgtttaaattaataataaatagaaatttatgttataagctcaataaaagattaaatatagcttcaaataaatacaattaataggcgagagattttatcgtaaaaagcatatcgaatta    >  1:1307513‑M1/1‑2 (MQ=255)
                                                                                                                                            gActcatcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccgaatta    >  2:1567309‑M1/1‑2 (MQ=255)
                                                                                                                                             atgaGtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccgaattaa  <  1:682819‑M2/141‑137 (MQ=255)
                                                                                                                                             atgaGtcagtgatcttttttttcgtttaaattaagaataaatagaaatttatgttataagctcaatagaagtttaaatatagcttcaaataaaaacgataaataagcgagtgatgttattggaaaaagcttaccgaattaa  <  2:777132‑M2/141‑137 (MQ=255)
                                                                                                                                             atgaGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTa  <  1:1409611/141‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                             
TCTTTTTAATTCGGTAAGCTTTTTCCAATAACATCACTCGCTTATTTATCGTTTTTATTTGAAGCTATATTTAAACTTCTATTGAGCTTATAACATAAATTTCTATTTATTCTTAATTTAAACGAAAAAAAAGATCACTGATGAGTCAGTGATCTTATGCAGATAAAACTTTACGGCCTTTACGACGACGGCGCGCTAAAACTTTACGGCCATTTTTTGTGCTCATGCGTTTTCTGAAACCATGAACTTTACTATGTTTACGTTTATTTGGTTGATAAGTA  >  USA300TCH1516_ALE/2872437‑2872717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.