New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 9 =270 (0.030)9 (0.000)
+AAAAAAAAAA
6/234 NT 6.7% intergenic (–/‑271) –/USA300HOU_RS14890 –/replication protein
?NC_012417 = 3123 0 (0.000)intergenic (‑449/–) USA300HOU_RS14900/– hypothetical protein/–

Only 100 of 10782 total aligned reads displayed.

CTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2983‑3125
                                                                                                                                            |                                                                                                                                            
cTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                                              >  1:155208/1‑141 (MQ=255)
   gATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa                                                                                                                                           <  1:1081714‑M2/141‑2 (MQ=255)
   gATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa                                                                                                                                           <  2:144708‑M2/141‑2 (MQ=255)
    aTTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATat                                                                                                                                          >  3:23970‑M2/1‑139 (MQ=255)
     ttttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatg                                                                                                                                         <  3:622833‑M2/141‑4 (MQ=255)
      tttATATATATAGCTGTAACTGTTGCTATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATACAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgc                                                                                                                                        >  2:830785‑M2/1‑137 (MQ=255)
         atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                                     <  4:563830‑M2/141‑8 (MQ=255)
         atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                                                                                     <  2:1533838‑M2/141‑8 (MQ=255)
          tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTTCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                                    <  4:359768‑M2/141‑9 (MQ=255)
          tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                                    <  2:1360354‑M2/141‑9 (MQ=255)
          tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                                    <  1:268258‑M2/141‑9 (MQ=255)
          tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                                    <  3:493000‑M2/141‑9 (MQ=255)
          tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                                                                                    >  2:157705‑M2/1‑133 (MQ=255)
             atataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataa                                                                                                                                 <  4:651121‑M2/141‑12 (MQ=255)
                 aGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatact                                                                                                                             >  2:742412‑M2/1‑126 (MQ=255)
                  gCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatacta                                                                                                                            >  4:223939‑M2/1‑125 (MQ=255)
                      tAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactag                                                                                                                        >  2:43207‑M2/1‑121 (MQ=255)
                        aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaa                                                                                                                      <  1:389263‑M2/141‑23 (MQ=255)
                        aCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaa                                                                                                                      <  1:927863‑M2/141‑23 (MQ=255)
                          tGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACACCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt                                                                                                                    <  1:1633409‑M2/141‑25 (MQ=255)
                          tGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTAAAAAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagt                                                                                                                    >  4:265110‑M2/1‑117 (MQ=255)
                            ttGATCTTACAGTGTCTAAACGTGTTTTTGTACGTGAAAAGAATAACTGACAATAAATAACCCAATTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtat                                                                                                                  >  4:60911‑M2/1‑115 (MQ=255)
                            ttGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtat                                                                                                                  >  2:213554‑M2/1‑115 (MQ=255)
                             tGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtata                                                                                                                 <  2:102086‑M2/141‑28 (MQ=255)
                              gATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataa                                                                                                                >  2:1281232‑M2/1‑113 (MQ=255)
                              gATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatacaatataatactactagaagtataa                                                                                                                >  1:1041659‑M2/1‑113 (MQ=255)
                                tatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacc                                                                                                              >  1:305328‑M2/1‑111 (MQ=255)
                                tatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacc                                                                                                              >  2:1231385‑M2/1‑111 (MQ=255)
                                 atTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccg                                                                                                             >  3:109170‑M2/1‑110 (MQ=255)
                                 atTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccg                                                                                                             >  1:971870‑M2/1‑110 (MQ=255)
                                  ttACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccga                                                                                                            >  1:1519058‑M2/1‑109 (MQ=255)
                                   tACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaa                                                                                                           <  2:337457‑M2/141‑34 (MQ=255)
                                   tACAGTGTTTAAACGTGTTTTTGTGAGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaa                                                                                                           <  4:31367‑M2/141‑34 (MQ=255)
                                      aGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaat                                                                                                        <  4:692764‑M2/141‑37 (MQ=255)
                                       gtgtTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatc                                                                                                       <  1:1430164‑M2/141‑38 (MQ=255)
                                        tgtTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatca                                                                                                      >  2:921832‑M2/1‑103 (MQ=255)
                                           ttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaaga                                                                                                   <  2:1190605‑M2/141‑42 (MQ=255)
                                              aaCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataa                                                                                                >  4:138959‑M2/1‑97 (MQ=255)
                                                   gtTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaa                                                                                           <  1:129296‑M2/141‑50 (MQ=255)
                                                     ttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                                                                         >  2:170610‑M2/1‑90 (MQ=255)
                                                     ttttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacg                                                                                         >  2:649551‑M2/1‑90 (MQ=255)
                                                       ttGTCCGTGAAAAGAAAATTTGAAAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTATTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataacacgtt                                                                                       >  2:1400902‑M2/1‑88 (MQ=255)
                                                        cgtgcGTGAAAGGAAAATTTGACCATAAAAAACCCCAGTTATATTATTAAGGTGTAGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagacgtataaccgaaaatcaagataataaaacgtta                                                                                      <  2:115168‑M2/140‑55 (MQ=255)
                                                         gtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaa                                                                                     >  1:470119‑M2/1‑86 (MQ=255)
                                                         gtgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaa                                                                                     >  1:888921‑M2/1‑86 (MQ=255)
                                                          tgCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaa                                                                                    <  3:702592‑M2/141‑57 (MQ=255)
                                                              tGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagat                                                                                <  1:11203‑M2/141‑61 (MQ=255)
                                                               tttttgaaaatTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTTTtttttttttaatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatt                                                                               <  4:477846‑M2/136‑62 (MQ=255)
                                                                   ggAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgac                                                                           >  1:774396‑M2/1‑76 (MQ=255)
                                                                       aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCttttt                                                                                                                                              >  1:674309/1‑70 (MQ=255)
                                                                       aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa                                                                       >  3:295412‑M2/1‑72 (MQ=255)
                                                                        aTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaa                                                                      <  1:1472668‑M2/141‑71 (MQ=255)
                                                                           tGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacggtaaaagataagacgaaaagag                                                                   <  1:351156‑M2/141‑74 (MQ=255)
                                                                            gACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgg                                                                  >  2:96190‑M2/1‑67 (MQ=255)
                                                                             aCAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggg                                                                 <  1:186077‑M2/141‑76 (MQ=255)
                                                                             aCAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggg                                                                 <  1:1251477‑M2/141‑76 (MQ=255)
                                                                             aCAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtggg                                                                 <  2:787364‑M2/141‑76 (MQ=255)
                                                                               aaTAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaa                                                               <  1:1341892‑M2/141‑78 (MQ=255)
                                                                                 tAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaac                                                             >  3:455419‑M2/1‑62 (MQ=255)
                                                                                    aaaaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaac                                                          >  2:47877‑M2/1‑59 (MQ=255)
                                                                                      aaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaggtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgc                                                        <  3:419763‑M2/141‑85 (MQ=255)
                                                                                      aaCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgc                                                        >  3:57888‑M2/1‑57 (MQ=255)
                                                                                        ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgccc                                                      <  2:106222‑M2/141‑87 (MQ=255)
                                                                                        ccccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaaccaagataataaaaagttaaaagatatgacaacaagtgggaaacaacgcaa                                                      <  1:72764‑M2/141‑87 (MQ=255)
                                                                                         cccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagctaataaaacgttaaaagatatgacgaaaagtgggaaacaacgccca                                                     >  4:185895‑M2/1‑54 (MQ=255)
                                                                                         cccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgccca                                                     >  2:694584‑M2/1‑54 (MQ=255)
                                                                                         cccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgccca                                                     >  3:157215‑M2/1‑54 (MQ=255)
                                                                                          ccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccat                                                    >  2:1493676‑M2/1‑53 (MQ=255)
                                                                                          ccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccat                                                    <  1:593103‑M2/141‑89 (MQ=255)
                                                                                          ccAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccat                                                    >  2:601770‑M2/1‑53 (MQ=255)
                                                                                              ttATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTATATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggag                                                >  4:397130‑M2/1‑49 (MQ=255)
                                                                                                   ttattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaa                                           <  1:1163842‑M2/141‑98 (MQ=255)
                                                                                                    tattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaa                                          >  1:549806‑M2/1‑43 (MQ=255)
                                                                                                    tattaAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaa                                          <  1:224252‑M2/141‑99 (MQ=255)
                                                                                                       taAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaa                                       >  4:102424‑M2/1‑40 (MQ=255)
                                                                                                               cGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaattaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagata                               <  1:1209803‑M2/141‑110 (MQ=255)
                                                                                                               cGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagata                               >  4:438087‑M2/1‑32 (MQ=255)
                                                                                                               cGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaac                                                             <  2:296304‑M2/111‑80 (MQ=255)
                                                                                                                 aaTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataat                             <  3:198848‑M2/141‑112 (MQ=255)
                                                                                                                  aTCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagagaagaaaatagataatg                            <  1:1000125‑M2/141‑113 (MQ=255)
                                                                                                                  aTCTTAAATAATACTGCGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatg                            <  2:252612‑M2/141‑113 (MQ=255)
                                                                                                                   tCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgt                           >  3:666614‑M2/1‑28 (MQ=255)
                                                                                                                    cTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgta                          <  2:521435‑M2/141‑115 (MQ=255)
                                                                                                                       aaaTAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagc                       >  3:537663‑M2/1‑24 (MQ=255)
                                                                                                                       aaaTAATACTGGGGGCCATTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagc                       >  1:510913‑M2/1‑24 (MQ=255)
                                                                                                                         ataataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagcaaatagataatgtaagcta                     <  2:1325759‑M2/141‑120 (MQ=255)
                                                                                                                          taataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctat                    >  1:432990‑M2/1‑21 (MQ=255)
                                                                                                                            ataCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgc                  <  2:566469‑M2/141‑123 (MQ=255)
                                                                                                                             taCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgca                 <  1:1588685‑M2/141‑124 (MQ=255)
                                                                                                                              aCTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcag                <  3:333891‑M2/141‑125 (MQ=255)
                                                                                                                                tGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagat              >  1:632268‑M2/1‑15 (MQ=255)
                                                                                                                                 gggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagata             >  1:1382530‑M2/1‑14 (MQ=255)
                                                                                                                                  ggggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatat            >  2:1106375‑M2/1‑13 (MQ=255)
                                                                                                                                   gggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatata           >  2:1620538‑M2/1‑12 (MQ=255)
                                                                                                                                    ggTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatac          >  2:882614‑M2/1‑11 (MQ=255)
                                                                                                                                        tttttATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatactaga      <  1:853898‑M2/141‑135 (MQ=255)
                                                                                                                                         ttttATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatactagaa     <  1:815494‑M2/141‑136 (MQ=255)
                                                                                                                                           ttATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatactagaaat   <  4:517359‑M2/141‑138 (MQ=255)
                                                                                                                                            tatatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatactagaaatt  >  3:382471‑M2/1‑3 (MQ=255)
                                                                                                                                            tatatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgcccatggagagaaaagaaaatagataatgtaagctatgcagatatacaagaaaaa  >  2:381978‑M2/1‑3 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2983‑3125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.