New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 760039168 (0.920)9 (0.060) 10/226 NT 5.5% intergenic (+13/+114) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA
?USA300TCH1516_ALE = 760055 157 (0.970)intergenic (+29/+98) USA300HOU_RS03705/mgrA Putative multidrug export ATP‑binding/permease protein/HTH‑type transcriptional regulator MgrA

Only 100 of 211 total aligned reads displayed.

TTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCT  >  USA300TCH1516_ALE/759916‑760195
                                                                                                                                           |                                                                                                                                            
tttGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTt                                                                                                                                             >  2:924761‑M2/1‑140 (MQ=255)
  tGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtca                                                                                                                                           >  2:1517570‑M2/1‑138 (MQ=255)
   gagaCCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaa                                                                                                                                          <  4:706046‑M2/141‑5 (MQ=255)
   gagaCCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaa                                                                                                                                          <  4:140410‑M2/141‑5 (MQ=255)
   gagaCCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaa                                                                                                                                          <  2:807334‑M2/141‑5 (MQ=255)
   gagaCCATCATTGTGAGGATAAATGGTAAAATAGTTGAACAGGGAAACTAGCAAGAATTACTAGCGAATCAGGGTGCTTTATGGAATATGATTCAATATAATGCATACCAAAACTGCTTGGTAGGCTAAGAAACCTTtcaa                                                                                                                                          <  2:413611‑M2/141‑5 (MQ=255)
        catcatTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagt                                                                                                                                     >  2:1021228‑M2/1‑132 (MQ=255)
        catcatTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagt                                                                                                                                     <  1:266709‑M2/141‑10 (MQ=255)
         atcatTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTAACAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagtt                                                                                                                                    >  2:1254448‑M2/1‑131 (MQ=255)
           gattGGGATCAAAAATGATAAAATAGTTGAAAAGGGAACCTATCAACAATTACTAGCCAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGGTAGGCTAAGAAACCTTccaagcagtgtt                                                                                                                                  >  4:529766‑M2/2‑129 (MQ=255)
           catTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagtttt                                                                                                                                  >  1:91267‑M2/1‑129 (MQ=255)
             ttGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTtcaagcagtttttt                                                                                                                                >  3:513035‑M2/1‑127 (MQ=255)
              tgtgATGATAGATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTta                                                                                                                               >  2:905405/1‑141 (MQ=255)
              tgtgATGATAAATGGTAAAATAGTTGAAAAGGGAGACTATCAACAATTGCTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTta                                                                                                                               >  2:1486300/1‑141 (MQ=255)
              tgtgATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTta                                                                                                                               <  3:664854/141‑1 (MQ=255)
                 gatgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaact                                                                                                                            >  4:454449/1‑141 (MQ=255)
                 gatgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaact                                                                                                                            >  2:1210169/1‑141 (MQ=255)
                  atgatAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaacta                                                                                                                           >  2:1415356/1‑141 (MQ=255)
                   tgatAAATGTTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTtaactaa                                                                                                                          <  2:646162/141‑1 (MQ=255)
                     atAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACa                                                                                                                        <  4:403323/141‑1 (MQ=255)
                      tAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACaa                                                                                                                       >  4:565890/1‑141 (MQ=255)
                       aaaTGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAg                                                                                                                      <  3:383407/141‑1 (MQ=255)
                         aTGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCt                                                                                                                    >  1:29652/1‑141 (MQ=255)
                               aaaTAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTAcgcg                                                                                                              >  3:704023/1‑141 (MQ=255)
                               aaaTAGTTGAAAAGGCAAACTATCAACAATTACTCGCTAATCAAGGAGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTAcgcg                                                                                                              <  4:102537/141‑1 (MQ=255)
                                aaTAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGt                                                                                                             >  1:819691/1‑141 (MQ=255)
                                  tAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCCTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGc                                                                                                           <  2:184703/141‑1 (MQ=255)
                                  tAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGAAAGGTTTCTTAGCCTAtcaagcagtttttttatgcattatattgaatcata                                                                                                           >  3:321557‑M2/1‑106 (MQ=255)
                                   aGTTGACAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACCGCTTGATAGGCTCACAAACCTTTCAAGCAGTACTTTAACTAACAAGCTTACGCGTGCt                                                                                                          >  4:310934/1‑141 (MQ=255)
                                   aGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCt                                                                                                          <  1:1060402/141‑1 (MQ=255)
                                    gTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTa                                                                                                         <  2:407453/141‑1 (MQ=255)
                                        aaaaGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTg                                                                                                     <  4:176207/141‑1 (MQ=255)
                                         aaaGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGt                                                                                                    <  3:612321/141‑1 (MQ=255)
                                         aaaGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGt                                                                                                    >  2:1511735/1‑141 (MQ=255)
                                              gAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTc                                                                                               <  1:618779/141‑1 (MQ=255)
                                              gAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTc                                                                                               >  2:61607/1‑141 (MQ=255)
                                               aaaCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACGAGCTTACGCGTGCTAATTGTTTTTCt                                                                                              >  4:683221/1‑141 (MQ=255)
                                                 aCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAt                                                                                            >  3:205918/1‑141 (MQ=255)
                                                 aCTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAt                                                                                            >  1:336536/1‑141 (MQ=255)
                                                  cTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAtt                                                                                           <  1:1101178/141‑1 (MQ=255)
                                                  cTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAtt                                                                                           <  1:101730/141‑1 (MQ=255)
                                                       aacaaTTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTtaa                                                                                      >  4:149536/1‑141 (MQ=255)
                                                        acaaTTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTtaat                                                                                     >  2:602451/1‑141 (MQ=255)
                                                              aCTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTc                                                                               >  2:374047/1‑141 (MQ=255)
                                                                tAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTa                                                                             >  1:1275519/1‑141 (MQ=255)
                                                                 aGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACATTACAAGCAGTTTTTTAACTCACAAGCTTTCGCGTGCTATGGGTTTTGCTATTCTTTATAAATTCTaa                                                                            <  4:417786/141‑1 (MQ=255)
                                                                  gCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTaaa                                                                           >  1:1087081/1‑141 (MQ=255)
                                                                      aTCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACAtt                                                                       <  1:1392749/141‑1 (MQ=255)
                                                                        cAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTAc                                                                     >  2:545929/1‑141 (MQ=255)
                                                                         aaGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACt                                                                    >  1:145281/1‑141 (MQ=255)
                                                                           ggTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTTATTGTTTTTCTATTCTTAATAAATTCTAAACATTACttt                                                                  >  2:1345654/1‑141 (MQ=255)
                                                                           ggTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACttt                                                                  <  2:951934/141‑1 (MQ=255)
                                                                             tGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTaa                                                                >  1:1330332/1‑141 (MQ=255)
                                                                                  tATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACACGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTc                                                           <  1:1486300/141‑1 (MQ=255)
                                                                                   aTGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCa                                                          >  2:270556/1‑141 (MQ=255)
                                                                                    tGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAGACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCAt                                                         <  2:37895/141‑1 (MQ=255)
                                                                                    tGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTGTAATTGCCAt                                                         <  2:784233/141‑1 (MQ=255)
                                                                                     ggAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATg                                                        >  1:422351/1‑141 (MQ=255)
                                                                                        atatGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACa                                                     >  1:498184/1‑141 (MQ=255)
                                                                                        atatGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACa                                                     >  3:360422/1‑141 (MQ=255)
                                                                                         tatGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACaa                                                    >  1:1574510/1‑141 (MQ=255)
                                                                                          atGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACaaa                                                   <  1:405041/141‑1 (MQ=255)
                                                                                           tGATTAAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACaaaa                                                  >  1:742478/1‑141 (MQ=255)
                                                                                            gATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAg                                                 <  1:1591431/141‑1 (MQ=255)
                                                                                            gATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAg                                                 >  1:222945/1‑141 (MQ=255)
                                                                                                cAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTAtt                                                                                           >  4:372121/1‑95 (MQ=255)
                                                                                                 aaTATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAat                                            <  3:128354/141‑1 (MQ=255)
                                                                                                    ataATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAattat                                         <  3:408915/141‑1 (MQ=255)
                                                                                                      aaTGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAttt                                       >  1:513509/1‑141 (MQ=255)
                                                                                                       aTGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTACACTTTACTTTGATTGTCATGACAAAAGTTAATTAtttt                                      <  2:320095/141‑1 (MQ=255)
                                                                                                       aTGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAtttt                                      <  1:1301918/141‑1 (MQ=255)
                                                                                                        tGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTCAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTAttttt                                     <  4:631534/141‑1 (MQ=255)
                                                                                                          cATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTcc                                   <  1:1516584/141‑1 (MQ=255)
                                                                                                            tAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCtt                                 <  4:236267/141‑1 (MQ=255)
                                                                                                            tAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCtt                                 <  3:306468/141‑1 (MQ=255)
                                                                                                            tAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCtt                                 >  2:679106/1‑141 (MQ=255)
                                                                                                               aaaaaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGt                              <  1:270556/141‑1 (MQ=255)
                                                                                                                aaaaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGtt                             <  2:1182499/141‑1 (MQ=255)
                                                                                                                 aaaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTCTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGttt                            <  1:465481/141‑1 (MQ=255)
                                                                                                                  aaCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtc                           >  1:1537733/1‑141 (MQ=255)
                                                                                                                   aCTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtca                          <  2:744503/141‑1 (MQ=255)
                                                                                                                    cTGCTTGATAGGCTAAGAAACCTTtcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatgg                         <  3:151008‑M2/141‑118 (MQ=255)
                                                                                                                    cTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtcat                         <  4:207071/141‑1 (MQ=255)
                                                                                                                     tGCTTGATAGGCTAAGAAACCTTtcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatggt                        <  1:793444‑M2/141‑119 (MQ=255)
                                                                                                                      gCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtcatca                       >  1:1654746/1‑141 (MQ=255)
                                                                                                                      gCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtcatca                       >  2:1365894/1‑141 (MQ=255)
                                                                                                                      gCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTtcatca                       <  1:903323/141‑1 (MQ=255)
                                                                                                                       cTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCaa                      <  2:700017/141‑1 (MQ=255)
                                                                                                                        ttGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCaaa                     >  4:266331/1‑141 (MQ=255)
                                                                                                                        ttGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCaaa                     <  1:675299/141‑1 (MQ=255)
                                                                                                                         tGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAAt                    >  1:531755/1‑141 (MQ=255)
                                                                                                                           aTAGGCTAAGAAACCTTtcaagcagtttttttatgcattatattgaatcatattccataaagcaccttgattagctagtaattgttgatagtttcccttttcaactattttaccatttatcatcacaatgatggtctcaaa                  <  2:1646197‑M2/141‑125 (MQ=255)
                                                                                                                            tAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCa                 <  1:555424/141‑1 (MQ=255)
                                                                                                                               gCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCatga              <  1:578009/141‑1 (MQ=255)
                                                                                                                                   aGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCatgaatga          >  3:454379/1‑141 (MQ=255)
                                                                                                                                   aGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCatgaatga          >  2:1478459/1‑141 (MQ=255)
                                                                                                                                    gAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGAc         >  3:214176/1‑141 (MQ=255)
                                                                                                                                      aaCCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACtt       >  3:571286/1‑141 (MQ=255)
                                                                                                                                       aCCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACttt      <  4:659934/141‑1 (MQ=255)
                                                                                                                                           ttCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCt  <  2:1630958/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
TTTGAGACCATCATTGTGATGATAAATGGTAAAATAGTTGAAAAGGGAAACTATCAACAATTACTAGCTAATCAAGGTGCTTTATGGAATATGATTCAATATAATGCATAAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCT  >  USA300TCH1516_ALE/759916‑760195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.