BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	955970 =	170 (0.930)	10 (0.060)	9/230	NT	6.4%	intergenic (‑192/+50)	glpQ_1/argH	Glycerophosphodiester phosphodiesterase/Argininosuccinate lyase
*	?	USA300TCH1516_ALE	956005 =	139 (0.840)	10 (0.060)	9/230	NT	6.4%	intergenic (‑227/+15)	glpQ_1/argH	Glycerophosphodiester phosphodiesterase/Argininosuccinate lyase

Only 100 of 203 total aligned reads displayed.

TTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAATATCGGCA  >  USA300TCH1516_ALE/955866‑956143

ttttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGggtagg                                                                                                                                           <  3:174884/141‑1 (MQ=255)

ttttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGggtagg                                                                                                                                           <  1:1425951/141‑1 (MQ=255)

ttttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGggtagg                                                                                                                                           >  1:1447948/1‑141 (MQ=255)

  ttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGggtaggta                                                                                                                                         >  4:333586/1‑141 (MQ=255)

    aCAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGa                                                                                                                                       >  1:1141585/1‑141 (MQ=255)

         ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                                                  <  1:54823/141‑1 (MQ=255)

         ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                                                  >  2:307191/1‑141 (MQ=255)

         ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                                                  <  3:419009/141‑1 (MQ=255)

          tataACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACg                                                                                                                                 <  3:45543/141‑1 (MQ=255)

          tataACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACg                                                                                                                                 <  1:229759/141‑1 (MQ=255)

            taACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGta                                                                                                                               >  4:232587/1‑141 (MQ=255)

             aaCATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGtat                                                                                                                              >  1:284326/1‑141 (MQ=255)

              aCATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGtatt                                                                                                                             <  4:91237/141‑1 (MQ=255)

               cATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGtattt                                                                                                                            >  1:997291/1‑141 (MQ=255)

                         atatAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAg                                                                                                                  >  1:1579336/1‑141 (MQ=255)

                         atatAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACACACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTCGAACAACGTATTTATTGTGATAg                                                                                                                  >  1:434996/1‑141 (MQ=255)

                         atatAAATTTAAAAGAATTATAAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAg                                                                                                                  >  2:58238/1‑141 (MQ=255)

                          tataAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGt                                                                                                                 <  1:1101586/141‑1 (MQ=255)

                          tataAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGt                                                                                                                 <  3:59185/141‑1 (MQ=255)

                          tataAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGt                                                                                                                 <  1:363853/141‑1 (MQ=255)

                           ataAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTa                                                                                                                <  1:1536496/141‑1 (MQ=255)

                            taAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTaa                                                                                                               <  4:493237/141‑1 (MQ=255)

                                tttAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGt                                                                                                           <  2:1457501/141‑1 (MQ=255)

                                   tcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctacctacccacaatgtaattttattagacattgtgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGttt                                                                                                         <  2:1108433‑M2/36‑1 (MQ=255)

                                   aaaaGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTa                                                                                                        >  2:47299/1‑141 (MQ=255)

                                     aaGAATTATCACACATCACAGGAAGCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATGCCAACAATGTA‑ATGTTAATAGAGATCTTGGGTAGGTAGAACAACGTACTTATTGTGATAGTAATTGGTTAGc                                                                                                      >  4:511459/1‑141 (MQ=255)

                                      aGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCa                                                                                                     <  4:26480/141‑1 (MQ=255)

                                        aaTTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAAc                                                                                                   <  2:1399287/141‑1 (MQ=255)

                                         aTTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACa                                                                                                  >  4:156027/1‑141 (MQ=255)

                                          ttATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACAt                                                                                                 <  2:211808/141‑1 (MQ=255)

                                          ttATCAAAAATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGAATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACAt                                                                                                 <  4:672516/141‑1 (MQ=255)

                                           tATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATc                                                                                                <  2:682826/141‑1 (MQ=255)

                                           tATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATc                                                                                                <  3:307157/141‑1 (MQ=255)

                                           tATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATc                                                                                                <  3:146246/141‑1 (MQ=255)

                                           cggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctacctacccacaatgtaattttaatagacattgtgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACAt                                                                                                 <  4:123850‑M2/44‑1 (MQ=255)

                                              cAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAg                                                                                             <  2:535658/141‑1 (MQ=255)

                                              cAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAg                                                                                             >  2:1215846/1‑141 (MQ=255)

                                               aaaCATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAgt                                                                                            <  1:118630/141‑1 (MQ=255)

                                                       tAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGttt                                                                                    <  4:172872/141‑1 (MQ=255)

                                                        aGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTg                                                                                   >  2:1249627/1‑141 (MQ=255)

                                                         ggAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCGACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTATTGTTTGa                                                                                  >  4:646711/1‑141 (MQ=255)

                                                            aTCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGc                                                                                                      <  1:104571/118‑1 (MQ=255)

                                                            aTCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCg                                                                               <  2:1132463/141‑1 (MQ=255)

                                                               ttAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatg                                                                            <  2:612052/141‑1 (MQ=255)

                                                                tAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatga                                                                           <  1:417385/141‑1 (MQ=255)

                                                                tAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatga                                                                           >  1:172290/1‑141 (MQ=255)

                                                                tAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATGAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatga                                                                           <  2:756613/141‑1 (MQ=255)

                                                                 aaaaaTGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatgat                                                                          <  1:554455/141‑1 (MQ=255)

                                                                 aaaaaTGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatgat                                                                          <  2:1072073/141‑1 (MQ=255)

                                                                        tgATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTg                                                                   <  1:619949/141‑1 (MQ=255)

                                                                        tgATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTg                                                                   >  3:401547/1‑141 (MQ=255)

                                                                        tgATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTg                                                                   >  2:1496477/1‑141 (MQ=255)

                                                                         gATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGt                                                                  <  1:1290583/141‑1 (MQ=255)

                                                                         gATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGt                                                                  >  1:1278519/1‑141 (MQ=255)

                                                                            gTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGa                                                               <  3:495391/141‑1 (MQ=255)

                                                                            actatcacaataaatacgttaatctaccTACCCACAATGTCTATTAAAATT‑ACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGa                                                               <  1:1446037‑M1/113‑1 (MQ=255)

                                                                              tCAACAAGACAACGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGGAc                                                             <  2:902499/141‑1 (MQ=255)

                                                                               caacaaGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTTGGTAGGTAGATGAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAAcc                                                            <  2:411752/141‑1 (MQ=255)

                                                                                 acaaGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGt                                                          <  1:1215846/141‑1 (MQ=255)

                                                                                 acaaGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGt                                                          >  2:1033290/1‑141 (MQ=255)

                                                                                  caaGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTa                                                         >  1:624747/1‑141 (MQ=255)

                                                                                    aGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAAc                                                       <  2:163234/141‑1 (MQ=255)

                                                                                      taaatacgttaatctaccTACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACtt                                                     <  2:1551512‑M1/123‑1 (MQ=255)

                                                                                      aCGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACtt                                                     <  2:1379841/141‑1 (MQ=255)

                                                                                         aaGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGa                                                  >  1:569056/1‑141 (MQ=255)

                                                                                          agagagCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAc                                                 >  2:925090/1‑141 (MQ=255)

                                                                                           gagagCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAcg                                                <  2:1269846/141‑1 (MQ=255)

                                                                                              agCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAcgtcg                                             >  2:201785/1‑141 (MQ=255)

                                                                                               gCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAcgtcgt                                            <  3:197778/141‑1 (MQ=255)

                                                                                                 atctaccTACCCACAATGTCTATTAAAATT‑ACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGttt                                          <  1:401596‑M1/134‑1 (MQ=255)

                                                                                                      aaTACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAAc                                     <  1:1037944/141‑1 (MQ=255)

                                                                                                       aTACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACa                                    <  1:957870/141‑1 (MQ=255)

                                                                                                         ACCCACAATGTA‑ATTTTAATAGACATTGTGTGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAAt                                  <  4:532982‑M1/141‑1 (MQ=255)

                                                                                                          CCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAAtt                                 <  3:669368‑M1/141‑1 (MQ=255)

                                                                                                          CCCACAATGTA‑ATTTTAATAGACATGGTGGGGAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGGAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTCGAACCGTAACTTTGACGTCGTTTTAAACAAtt                                 <  3:659571‑M1/141‑1 (MQ=255)

                                                                                                           CCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAAttt                                <  2:810167‑M1/141‑1 (MQ=255)

                                                                                                           CCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAAttt                                <  1:975740‑M1/141‑1 (MQ=255)

                                                                                                                  GTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGttt                                                                                    <  1:1262846‑M1/82‑1 (MQ=255)

                                                                                                                  GTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGttt                                                                                    >  2:1262846‑M1/1‑82 (MQ=255)

                                                                                                                   TA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTg                        >  1:217540‑M1/1‑141 (MQ=255)

                                                                                                                   TA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTg                        >  1:683507‑M1/1‑141 (MQ=255)

                                                                                                                   TA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTg                        >  4:12314‑M1/1‑141 (MQ=255)

                                                                                                                    a‑aTTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGc                       <  2:1002188/141‑1 (MQ=255)

                                                                                                                    a‑aTTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGc                       <  4:433933/141‑1 (MQ=255)

                                                                                                                      aTTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCa                      >  4:465934/1‑141 (MQ=255)

                                                                                                                       ttttAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCaa                     <  1:466938/141‑1 (MQ=255)

                                                                                                                       ttttAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTCACCTCTTCAACCGTAACTTTGACGTCGTTTTAAACACTTTTCAGGCTGCaa                     >  1:151888/1‑141 (MQ=255)

                                                                                                                        tttAATAGACATTGTGGGTAGGTAGAGTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCaaa                    <  2:1522912/141‑1 (MQ=255)

                                                                                                                              aGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCg              <  4:197762/141‑1 (MQ=255)

                                                                                                                              aGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCg              <  4:616826/141‑1 (MQ=255)

                                                                                                                               gACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTGTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGt             <  2:1429626/141‑1 (MQ=255)

                                                                                                                                acattgtgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTa            <  2:1579336‑M2/129‑1 (MQ=255)

                                                                                                                                acattgtgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTCTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTa            <  1:100108‑M2/129‑1 (MQ=255)

                                                                                                                                  attgtgggtaGGTAGATTAAAGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTaaa          <  2:361468‑M2/131‑1 (MQ=255)

                                                                                                                                     gtgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAatat       <  2:1372843‑M2/134‑1 (MQ=255)

                                                                                                                                     gtgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAatat       <  3:567692‑M2/134‑1 (MQ=255)

                                                                                                                                      tgggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAATATc      >  4:373817‑M2/7‑141 (MQ=255)

                                                                                                                                       gggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAATATCg     <  2:889219‑M2/136‑1 (MQ=255)

                                                                                                                                        ggtaGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAATATCgg    >  2:1140896‑M2/5‑141 (MQ=255)

                                                                                                                                          taGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAATATCGGCa  <  2:692360‑M2/139‑1 (MQ=255)

TTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTA‑ATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACAATTTTCAGGCTGCAAATAATCGTAAATATCGGCA  >  USA300TCH1516_ALE/955866‑956143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.