New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1525192 =148 (0.810)7 (0.040) 7/232 NT 5.0% intergenic (‑265/+57) asnS/dinG_1 Asparagine‑‑tRNA ligase/putative ATP‑dependent helicase DinG
?USA300TCH1516_ALE 1525239 = 130 (0.780)intergenic (‑312/+10) asnS/dinG_1 Asparagine‑‑tRNA ligase/putative ATP‑dependent helicase DinG

Only 100 of 176 total aligned reads displayed.

TATAATAAAGCCTCAATATTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATCAA  >  USA300TCH1516_ALE/1525100‑1525379
                                                                                                                                           |                                                                                                                                             
tataATAAAGCCTCAATATTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTAc                                                                                                                                              >  1:818610/1‑141 (MQ=255)
   aataaAGCCTCAATATTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACttt                                                                                                                                           >  1:1538470/1‑141 (MQ=255)
   aataaAGCCTCAATATTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACttt                                                                                                                                           >  1:1497727/1‑141 (MQ=255)
        aGCCTCAATATTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTAtt                                                                                                                                      <  2:23892/141‑1 (MQ=255)
               atatTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGTACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCActtt                                                                                                                               <  1:91412/141‑1 (MQ=255)
               atatTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATGTCActtt                                                                                                                               <  3:625979/141‑1 (MQ=255)
                 attattAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCActtttt                                                                                                                             >  1:1428027/1‑141 (MQ=255)
                  ttattaGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCActttttc                                                                                                                            <  2:920159/141‑1 (MQ=255)
                   tattaGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCActttttct                                                                                                                           <  4:248419/141‑1 (MQ=255)
                   tattaGTATGAACGTCCCGGTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCActttttct                                                                                                                           <  1:510079/141‑1 (MQ=255)
                    attaGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACACGTCATGTCACAAGAATTTTACTTTGTATTTCActttttctt                                                                                                                          >  3:160584/1‑141 (MQ=255)
                        gTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCtttttt                                                                                                                      <  2:533324/141‑1 (MQ=255)
                        gTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCtttttt                                                                                                                      <  1:273458/141‑1 (MQ=255)
                        gTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCtttttt                                                                                                                      <  2:1620603/141‑1 (MQ=255)
                         tATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCttttttt                                                                                                                     >  2:957763/1‑141 (MQ=255)
                         tATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCttttttt                                                                                                                     >  1:223000/1‑141 (MQ=255)
                          aTGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTAAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCTCATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTg                                                                                                                    <  1:66599/141‑1 (MQ=255)
                            gAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGaa                                                                                                                  >  3:352023/1‑141 (MQ=255)
                                   gTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCt                                                                                                           <  1:722588/141‑1 (MQ=255)
                                            gCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAAttt                                                                                                  >  1:598693/1‑141 (MQ=255)
                                              tAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTc                                                                                                <  1:719787/141‑1 (MQ=255)
                                              tAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTc                                                                                                <  2:1232398/141‑1 (MQ=255)
                                              tAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTc                                                                                                <  2:636822/141‑1 (MQ=255)
                                               aaCATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTcc                                                                                               <  2:1090998/141‑1 (MQ=255)
                                                   ttCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAAc                                                                                           <  2:177827/141‑1 (MQ=255)
                                                     cAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTg                                                                                         >  1:1448884/1‑141 (MQ=255)
                                                       aGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTTATTTGTCTTAATAATTTTCCAAACTGtt                                                                                       >  2:608145/1‑141 (MQ=255)
                                                       aGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGtt                                                                                       >  4:141468/1‑141 (MQ=255)
                                                           tAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAAt                                                                                   >  1:1091181/1‑141 (MQ=255)
                                                            aaTTATAAAACTCAATTTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTCATCATTCTCCAAACTGTTGAATg                                                                                  >  1:434839/1‑141 (MQ=255)
                                                            aaTTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATg                                                                                  <  1:1421959/141‑1 (MQ=255)
                                                            aaTTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATg                                                                                  <  3:399094/141‑1 (MQ=255)
                                                             aTTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGt                                                                                 <  1:1625272/141‑1 (MQ=255)
                                                             aTTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGt                                                                                 >  2:141216/1‑141 (MQ=255)
                                                                  aaaaCTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAGTTGGACTTGGAAGCTCACTGGGTCTTTTGTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCt                                                                           >  1:157273/1‑141 (MQ=255)
                                                                   aacctaaaaTTTTGACGTCAAAACAAAAATTCTTGTAACAGAGCATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAATCTGTTGAATGTCGCCtt                                                                          <  4:595689/135‑1 (MQ=255)
                                                                    aaCTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCttt                                                                         <  2:146727/141‑1 (MQ=255)
                                                                     aCTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTAATTTCTCTTAATAATTTTCCAAACTGTTGAATGTCGCCtttt                                                                        >  4:53212/1‑141 (MQ=255)
                                                                       tCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGCATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCtttttt                                                                      >  2:1022603/1‑141 (MQ=255)
                                                                           aTTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGTTTTTGTCTTAATAATTTTCCCAACTGATGAATGTCGCCTTTTTTCTgc                                                                  >  2:464901/1‑140 (MQ=255)
                                                                             tttGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACg                                                                <  2:974905/141‑1 (MQ=255)
                                                                                gacgacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTAATTTGTCTTATTAATTTTCCAAACTGTTGAATGTGGCCTTTTTTCTGACGTTa                                                             >  4:492328/1‑141 (MQ=255)
                                                                                gacgacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTtaat                                                                                                       <  2:271563/100‑1 (MQ=255)
                                                                                gacgacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATa                                                             >  1:1265642/1‑141 (MQ=255)
                                                                                gacgacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATa                                                             >  2:1166893/1‑141 (MQ=255)
                                                                                  cgacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTtaa                                                                                                        <  3:70221/97‑1 (MQ=255)
                                                                                  cgacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAAt                                                           <  2:280139/141‑1 (MQ=255)
                                                                                   gacCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAAtt                                                          <  1:598059/141‑1 (MQ=255)
                                                                                    acCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAAttt                                                         <  2:1380473/141‑1 (MQ=255)
                                                                                     ccAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAAtttt                                                        <  4:172937/141‑1 (MQ=255)
                                                                                      caaacaaaAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTc                                                       <  4:448563/141‑1 (MQ=255)
                                                                                       aaacaaaTATTCTTGTAATAGAACATATTACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCa                                                      <  1:1355011/141‑1 (MQ=255)
                                                                                        aacaaaAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCaa                                                     <  1:200213/141‑1 (MQ=255)
                                                                                        aacaaaAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCaa                                                     <  1:782081/141‑1 (MQ=255)
                                                                                            AAAATTCATGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAgtgt                                                 <  3:625060‑M1/141‑1 (MQ=255)
                                                                                               ATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTTTTTTTTTTTATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGtgtttg                                              <  2:825648‑M1/141‑1 (MQ=255)
                                                                                               ATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGtgtttg                                              <  1:197536‑M1/141‑1 (MQ=255)
                                                                                                TTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGtgtttgt                                             >  1:553267‑M1/1‑141 (MQ=255)
                                                                                                 TCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTTATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTTTCGATAATTTTCCAGtttttgtt                                            <  2:427004‑M1/141‑1 (MQ=255)
                                                                                                 TCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTTTTTTTTTAATTTTCAACtgtttgtt                                            <  2:1028433‑M1/141‑1 (MQ=255)
                                                                                                 TCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGtgtttgtt                                            <  1:1385294‑M1/141‑1 (MQ=255)
                                                                                                  cttgtgacatgacatgtgctatgttctgttacaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTACTAATTTTCAAAACTGTTGCCTGTAGCCTTTTTTCTGACGTTAATTTTCAAGTCTTTGTTc                                           >  1:493909‑M2/42‑141 (MQ=255)
                                                                                                  CTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGACTTTTTTCTGACGATAATTTTCAAGTGTTTGTTc                                           >  2:290916‑M1/1‑141 (MQ=255)
                                                                                                    TGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCaa                                         <  1:1496029‑M1/141‑1 (MQ=255)
                                                                                                    TGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCaa                                         >  4:210094‑M1/1‑141 (MQ=255)
                                                                                                     gtgacatgacatgtgctatgttctgttacaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTta                                                                                                         <  2:1484058‑M2/39‑1 (MQ=255)
                                                                                                     gtgacatgacatgtgctatgttctgttacaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTta                                                                                                         >  1:1484058‑M2/39‑77 (MQ=255)
                                                                                                     GTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCaaa                                        <  1:977115‑M1/141‑1 (MQ=255)
                                                                                                        acatgacatgtgctatgttctgttacaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCaaaaaa                                     >  4:145519‑M2/36‑141 (MQ=255)
                                                                                                            aaCATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGttt                                 <  4:128654/141‑1 (MQ=255)
                                                                                                              catatcacatatcaTGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGttttt                               <  3:218469/141‑1 (MQ=255)
                                                                                                               aTAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTTTTTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTta                              >  2:599301/1‑141 (MQ=255)
                                                                                                                tAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTtat                             >  3:166275/1‑141 (MQ=255)
                                                                                                                 aGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTtata                            <  3:316529/141‑1 (MQ=255)
                                                                                                                  gCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATaa                           <  1:506574/141‑1 (MQ=255)
                                                                                                                  gCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATaa                           >  1:755526/1‑141 (MQ=255)
                                                                                                                  gCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATaa                           >  1:1510490/1‑141 (MQ=255)
                                                                                                                   gctatgttctgttacaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCg                                                                               <  2:870530‑M2/65‑1 (MQ=255)
                                                                                                                   gctatgttctgttacaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCg                                                                               >  1:870530‑M2/25‑89 (MQ=255)
                                                                                                                   cacaTGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAAt                          <  2:1538470/141‑1 (MQ=255)
                                                                                                                   cacaTGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAAt                          >  4:161719/1‑141 (MQ=255)
                                                                                                                    acaTGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAAtt                         <  4:688126/141‑1 (MQ=255)
                                                                                                                    acaTGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAAtt                         <  1:124479/141‑1 (MQ=255)
                                                                                                                    acaTGTCATGTCACAAGAATTTTACTTTATATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTCACAATAATTTTCAAGTGTTTATTCAAAAAAGTTTTTATAAtt                         <  2:1066587/141‑1 (MQ=255)
                                                                                                                     catgtcatgtCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAAtt                         <  1:1053839/141‑1 (MQ=255)
                                                                                                                     catgtcatgtCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTa                        >  2:308918/1‑141 (MQ=255)
                                                                                                                      atgtcatgtcACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTATGATAAAAAAAGTTTTTATAATTAc                       <  4:556855/141‑1 (MQ=255)
                                                                                                                        gtcatgtcaCAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATa                                                             >  2:7667/1‑101 (MQ=255)
                                                                                                                         tcatgtcaCAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGt                    >  1:199844/1‑141 (MQ=255)
                                                                                                                            tgtcaCAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTa                 <  3:239027/141‑1 (MQ=255)
                                                                                                                             gtcaCAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCGAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTAt                <  1:879029/141‑1 (MQ=255)
                                                                                                                             gtcaCAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTAt                >  1:370669/1‑141 (MQ=255)
                                                                                                                               cacaAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGa              <  1:169338/141‑1 (MQ=255)
                                                                                                                                   ataattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATGATTTTCCAAACTGTTGAATGTCGCTTTTTTTCTGACGATATTTTTCAAGAGATTAAAAAAAAAAGTTTTTATAATTACTGTTTATGAGTCg          <  2:364453‑M2/133‑1 (MQ=255)
                                                                                                                                   agaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCg          <  3:48499‑M2/133‑1 (MQ=255)
                                                                                                                                   agaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCg          <  4:638998‑M2/133‑1 (MQ=255)
                                                                                                                                     aattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTTTTTTTTTTTTTTTCAAGTGTTTGTTTAAAAAAGTTTTTATTATTTCTGTTTTTGAGTTGat        >  2:202237‑M2/7‑141 (MQ=255)
                                                                                                                                           aCTTTGTATTTCACTTTTTCTTTTTTTTTTTTTTTCTTAATAATTTTCCAAACTGTTTAATGTCGCCTTTTTTCTGACGTTAATTTTCATGTGTTTTTTCAAAAAAGTTTTTATATTTACTGTTTATGTTTCTatcatctt  >  2:1497603/1‑139 (MQ=255)
                                                                                                                                           aCTTTGTATTTCACTTTTTCTTTTTTTTTTTTTTTCTTAATAATTTTCCAAACTGTTTAATGTCGCCTTTTTTCTGACGATAATTTTCATGTGTTTGTTCAAAAAAGTTTTTATTATTACTTTTTATGTTTCGAtcttcat  >  2:321896/1‑140 (MQ=255)
                                                                                                                                           aCTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATCaa  <  1:1321695/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                             
TATAATAAAGCCTCAATATTATTAGTATGAAGGTCGTTTTTTGTGCTAACATTCAAGTTTAATTATAAAACTCAAATTTTGACGACCAAACAAAAATTCTTGTAACAGAACATAGCACATGTCATGTCACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATCAA  >  USA300TCH1516_ALE/1525100‑1525379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.