BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1732959 =	174 (0.950)	10 (0.060)	6/230	NT	6.7%	intergenic (+145/+92)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein
*	?	USA300TCH1516_ALE	1733016 =	123 (0.740)	10 (0.060)	6/230	NT	6.7%	intergenic (+202/+35)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein

Only 100 of 182 total aligned reads displayed.

ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT  >  USA300TCH1516_ALE/1732878‑1733155

aTTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaaaa                                                                                                                                           <  2:765185/141‑1 (MQ=255)

  tttGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAata                                                                                                                                         <  3:494579/141‑1 (MQ=255)

  tttGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGAGCGCTTTCAAAata                                                                                                                                         >  4:582509/1‑141 (MQ=255)

   ttGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAatat                                                                                                                                        >  1:431772/1‑141 (MQ=255)

    tgaatgaaAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATGCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATAtt                                                                                                                                       >  2:406022/1‑141 (MQ=255)

    aataacgaagagaaaaaagaaaatgaagataaagagaaataaatttctttaaattttggatatgcttttcaatatttTGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATAtt                                                                                                                                       >  1:405092‑M1/78‑141 (MQ=255)

     gaatgaaGGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTg                                                                                                                                      >  1:606162/1‑141 (MQ=255)

      aatgaaAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTTTTTATTTGATGGGGCGCTTTCAAAATATTGa                                                                                                                                     <  4:668188/141‑1 (MQ=255)

         gaaAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaaa                                                                                                                                  >  2:1629899/1‑141 (MQ=255)

          aaaGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAg                                                                                                                                 >  4:293976/1‑141 (MQ=255)

             gATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATCCACTTAAAATTCTATTGCAAAAATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTAATCGGGCGCTTTCAAAATATTGAAAAGCat                                                                                                                              <  4:360767/141‑1 (MQ=255)

                gTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATc                                                                                                                           <  2:1603871/141‑1 (MQ=255)

                           tCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                                                                                <  1:928462/141‑1 (MQ=255)

                            cAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAg                                                                                                               >  2:819509/1‑141 (MQ=255)

                              aTCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaa                                                                                                             >  4:450736/1‑141 (MQ=255)

                                 atttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                                                                          <  3:562041/141‑1 (MQ=255)

                                 atttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                                                                          <  1:1521346/141‑1 (MQ=255)

                                   ttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTTATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                                                                        >  4:343345/1‑141 (MQ=255)

                                   ttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                                                                        >  2:85822/1‑141 (MQ=255)

                                   ttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                                                                        >  1:447565/1‑141 (MQ=255)

                                   ttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                                                                        >  2:1016535/1‑141 (MQ=255)

                                    tatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttat                                                                                                       <  3:589209/141‑1 (MQ=255)

                                     atttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttatt                                                                                                      >  3:219780/1‑141 (MQ=255)

                                      ttttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttattt                                                                                                     >  1:869525/1‑141 (MQ=255)

                                      ttttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttattt                                                                                                     <  1:296723/141‑1 (MQ=255)

                                       tttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                                                                    >  3:46234/1‑141 (MQ=255)

                                         tAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACTCTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                                                                  <  3:357269/141‑1 (MQ=255)

                                         tAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                                                                  <  1:1354643/141‑1 (MQ=255)

                                          aGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                                                                                 >  2:1600845/1‑141 (MQ=255)

                                              aTGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTAt                                                                                             >  2:1491195/1‑141 (MQ=255)

                                               tGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGACATTTATTTCTCTTTATc                                                                                            >  1:924485/1‑141 (MQ=255)

                                               tGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                                                                            >  2:1222679/1‑141 (MQ=255)

                                               tGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                                                                            <  2:575700/141‑1 (MQ=255)

                                                 aTTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCtt                                                                                          <  1:509818/141‑1 (MQ=255)

                                                       aTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtttt                                                                                    >  2:395407/1‑141 (MQ=255)

                                                          cACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt                                                                                 >  1:1018192/1‑141 (MQ=255)

                                                            cTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAACTTATTTCTCTTTCTCTTCATTTTCtttt                                                                               >  2:288690/1‑141 (MQ=255)

                                                               aaaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                                                                            >  2:1497466/1‑141 (MQ=255)

                                                               aaaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                                                                            >  1:105477/1‑141 (MQ=255)

                                                                aaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtct                                                                           <  2:558845/141‑1 (MQ=255)

                                                                  aTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTctct                                                                         <  3:517138/141‑1 (MQ=255)

                                                                     cTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCg                                                                      <  2:14128/141‑1 (MQ=255)

                                                                     cTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCg                                                                      >  2:1142679/1‑141 (MQ=255)

                                                                     cTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCg                                                                      <  2:38575/141‑1 (MQ=255)

                                                                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                                                                     >  1:1658761/1‑141 (MQ=255)

                                                                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                                                                     >  1:768985/1‑141 (MQ=255)

                                                                         tGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt                                                                  >  4:10805/1‑141 (MQ=255)

                                                                         tGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt                                                                  <  4:380819/141‑1 (MQ=255)

                                                                         tGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt                                                                  <  1:134961/141‑1 (MQ=255)

                                                                             attttgaaagcgccccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGttattagc                                                              >  2:956119‑M2/62‑138 (MQ=255)

                                                                                atGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATcc                                                           <  4:625896/141‑1 (MQ=255)

                                                                                  GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg                                                         <  2:45869‑M1/141‑1 (MQ=255)

                                                                                  GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg                                                         <  1:164368‑M1/141‑1 (MQ=255)

                                                                                  GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg                                                         >  1:1613633‑M1/1‑141 (MQ=255)

                                                                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAGGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGta                                                       <  1:1403412‑M1/141‑1 (MQ=255)

                                                                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGta                                                       <  4:51109‑M1/141‑1 (MQ=255)

                                                                                      GCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtata                                                     >  3:450736‑M1/1‑141 (MQ=255)

                                                                                       cgccccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat                                                    >  1:491624‑M2/52‑141 (MQ=255)

                                                                                       CGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat                                                    >  2:1268163‑M1/1‑141 (MQ=255)

                                                                                       CGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat                                                    >  1:1307739‑M1/1‑141 (MQ=255)

                                                                                           CCTTCATCTTGACTCTTTGTAAGTCTTTATGTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCAt                                                >  3:223927‑M1/1‑141 (MQ=255)

                                                                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCTTGTCTATTCAtt                                               >  2:286722‑M2/47‑141 (MQ=255)

                                                                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCAtt                                               >  1:132331‑M2/47‑141 (MQ=255)

                                                                                            CTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTTTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCAtt                                               >  1:1252674‑M1/1‑141 (MQ=255)

                                                                                              tCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATtta                                             <  3:632349/141‑1 (MQ=255)

                                                                                                aaCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatc                                           <  4:219780/141‑1 (MQ=255)

                                                                                                aaCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatc                                           <  3:303526/141‑1 (MQ=255)

                                                                                                 aataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGTTACTGTATATTCTTttatct                                          >  2:1387521‑M2/42‑141 (MQ=255)

                                                                                                 aataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatct                                          >  1:688440‑M2/42‑141 (MQ=255)

                                                                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatct                                          <  2:1527730/141‑1 (MQ=255)

                                                                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatct                                          <  3:157279/141‑1 (MQ=255)

                                                                                                  cTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatctt                                         <  2:924485/141‑1 (MQ=255)

                                                                                                     tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATttatcttatc                                      >  2:1153516/1‑141 (MQ=255)

                                                                                                        acTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCttt                                   <  3:615712/141‑1 (MQ=255)

                                                                                                        acTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCttt                                   <  1:860112/141‑1 (MQ=255)

                                                                                                        acTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCttt                                   <  1:672847/141‑1 (MQ=255)

                                                                                                         cTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCtttt                                  >  4:256360/1‑141 (MQ=255)

                                                                                                         cTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCtttt                                  <  4:68826/141‑1 (MQ=255)

                                                                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTa                                 >  1:1156366/1‑141 (MQ=255)

                                                                                                           gtgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTAc                                <  3:42587/141‑1 (MQ=255)

                                                                                                           gtgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTAc                                <  2:1430664/141‑1 (MQ=255)

                                                                                                             gtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACAt                              <  2:811331/141‑1 (MQ=255)

                                                                                                             gtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACAt                              <  2:661726/141‑1 (MQ=255)

                                                                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACAttttt                          <  1:370079/141‑1 (MQ=255)

                                                                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACAttttt                          <  2:606162/141‑1 (MQ=255)

                                                                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACAttttt                          <  2:1156974/141‑1 (MQ=255)

                                                                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACtt                     <  1:2155/141‑1 (MQ=255)

                                                                                                                          tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTTCATTTTTGACTTGttt                 >  2:825623/1‑140 (MQ=255)

                                                                                                                           gATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCa                >  4:160721/1‑141 (MQ=255)

                                                                                                                             tGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCAtt              >  1:536698/1‑141 (MQ=255)

                                                                                                                               gggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTAt            >  2:1162859‑M2/12‑141 (MQ=255)

                                                                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCg          <  4:277678‑M2/132‑1 (MQ=255)

                                                                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCg          >  1:246828‑M2/10‑141 (MQ=255)

                                                                                                                                   gctttcaAAATATTGAACAGCATATCCAAATTTTACAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCt        <  1:1242095‑M2/134‑1 (MQ=255)

                                                                                                                                   gctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCt        <  1:760422‑M2/134‑1 (MQ=255)

                                                                                                                                       tcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTAttt    <  1:933894‑M2/138‑1 (MQ=255)

                                                                                                                                       tcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTAttt    >  2:540082‑M2/4‑141 (MQ=255)

                                                                                                                                        aaAAATGTTGAAAAGCATATCCAAAATTTAAAGAAATTTATTACTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTAtttt   <  2:1584058‑M2/139‑1 (MQ=255)

                                                                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTAttttt  >  2:1198573‑M2/2‑141 (MQ=255)

                                                                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTAttttt  <  1:1600845‑M2/140‑1 (MQ=255)

ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATATTCATTTATCTTATCTTTTACATTTTTAACTTGTTCATTATCGCTATTTTT  >  USA300TCH1516_ALE/1732878‑1733155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.