BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2062972	139 (0.760)	17 (0.100)	10/226	NT	12.2%	intergenic (+53/+137)	pheA/sdcS	P‑protein/Sodium‑dependent dicarboxylate transporter SdcS
*	?	USA300TCH1516_ALE	= 2062986	122 (0.750)	17 (0.100)	10/226	NT	12.2%	intergenic (+67/+123)	pheA/sdcS	P‑protein/Sodium‑dependent dicarboxylate transporter SdcS

Only 100 of 181 total aligned reads displayed.

CCGATATAAAGAAAGTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTCAATGGCAGTGG  >  USA300TCH1516_ALE/2062846‑2063126

ccGATATAAAGAAAGTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCACGGCTTAAAATAGGAatcc                                                                                                                                              <  2:758909/141‑1 (MQ=255)

ccGATATAAAGAAAGTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAatcc                                                                                                                                              <  4:109403/141‑1 (MQ=255)

   atatAAAGAAAGTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatc                                                                                                                                           <  1:703423‑M2/141‑4 (MQ=255)

      taAAGAAAGTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatcctt                                                                                                                                        <  1:1640288‑M2/141‑7 (MQ=255)

       aaagaaagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatccttg                                                                                                                                       <  1:1016692‑M2/141‑8 (MQ=255)

       aaagaaagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGAATGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCCACCAAGGATTAAAATAGGAATCCatccttg                                                                                                                                       <  3:315532‑M2/141‑8 (MQ=255)

         agaaagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAATTGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatcgttggt                                                                                                                                     <  2:205067‑M2/141‑10 (MQ=255)

          gaaagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatccttggtt                                                                                                                                    <  1:1207854‑M2/141‑11 (MQ=255)

          gaaagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatccttggtt                                                                                                                                    >  3:630310‑M2/1‑131 (MQ=255)

            aagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatccttggttga                                                                                                                                  <  4:378423‑M2/141‑13 (MQ=255)

            aagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatccttggttga                                                                                                                                  <  2:611489‑M2/141‑13 (MQ=255)

            aagTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATAAAAATAGGAATCCatccttggttga                                                                                                                                  <  3:322560‑M2/141‑13 (MQ=255)

             agTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCatccttggttgac                                                                                                                                 <  1:448464‑M2/141‑14 (MQ=255)

                cATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTGAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActtt                                                                                                                              <  3:170333/141‑1 (MQ=255)

                 aTTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActttc                                                                                                                             >  1:283775/1‑141 (MQ=255)

                   tGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActttctt                                                                                                                           >  1:649668/1‑141 (MQ=255)

                    gCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActttcttt                                                                                                                          <  2:308131/141‑1 (MQ=255)

                       aTTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTtttgt                                                                                                                       >  2:167773/1‑141 (MQ=255)

                        tattAGCAACCTTACATTTCAAAGTAGAACTGATTGGTGCTTTTAATTAAAATTAATTTTATAGGTTCTACAATTTAAATAAAATAAAGAGTCAACAAAGAATTAAAATAGGAATCCATCCTTGGTTGACTTTCTtttgtt                                                                                                                      <  4:204155/139‑1 (MQ=255)

                         tttAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTtttgttt                                                                                                                     <  1:129154/141‑1 (MQ=255)

                          ttAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTtttgtttg                                                                                                                    <  2:706961/141‑1 (MQ=255)

                             gAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTAt                                                                                                                 >  4:245928/1‑141 (MQ=255)

                               aaCCTTATATTTCAAAGTAGAAATGATTGGTTCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTCAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTg                                                                                                               <  1:644725/141‑1 (MQ=255)

                               aaCCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTg                                                                                                               >  2:1018694/1‑141 (MQ=255)

                               aaCCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTg                                                                                                               <  2:1197685/141‑1 (MQ=255)

                               aaCCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTg                                                                                                               >  3:326674/1‑141 (MQ=255)

                                aCCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGt                                                                                                              >  1:1413688/1‑141 (MQ=255)

                                  cTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGttt                                                                                                            <  4:619168/141‑1 (MQ=255)

                                  cTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGttt                                                                                                            >  1:8793/1‑141 (MQ=255)

                                  cTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGttt                                                                                                            <  2:1286086/141‑1 (MQ=255)

                                   ttAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGACAACCAAGGATTAAAATAGGAATCCACCCTTGCTTGACTTTCTTTTGTTTGTATTGtttt                                                                                                           >  1:1359179/1‑141 (MQ=255)

                                        tttCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTacac                                                                                                      <  3:492538/141‑1 (MQ=255)

                                         ttCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACg                                                                                                     <  1:228261/141‑1 (MQ=255)

                                          tCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGa                                                                                                    <  2:560954/141‑1 (MQ=255)

                                              aGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgct                                                                                                >  1:604914/1‑141 (MQ=255)

                                              aGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgct                                                                                                <  1:1638128/141‑1 (MQ=255)

                                                tAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgctgc                                                                                              <  1:944745/141‑1 (MQ=255)

                                                 aGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCg                                                                                             >  3:465234/1‑141 (MQ=255)

                                                  gAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCgg                                                                                            <  1:1029820/141‑1 (MQ=255)

                                                    aaTGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGta                                                                                          >  1:97937/1‑141 (MQ=255)

                                                     aTGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtat                                                                                         >  3:631729/1‑141 (MQ=255)

                                                     aTGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtat                                                                                         >  2:232449/1‑141 (MQ=255)

                                                     aTGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtat                                                                                         >  2:144660/1‑141 (MQ=255)

                                                        aTTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACg                                                                                      <  1:9039/141‑1 (MQ=255)

                                                          tGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGtt                                                                                    <  3:50144/141‑1 (MQ=255)

                                                          tGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGtt                                                                                    <  1:38177/141‑1 (MQ=255)

                                                          tGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGtt                                                                                    <  2:648/141‑1 (MQ=255)

                                                            gTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTc                                                                                  >  3:569016/1‑141 (MQ=255)

                                                              gCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGt                                                                                >  1:427420/1‑141 (MQ=255)

                                                              gCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGt                                                                                >  1:620712/1‑141 (MQ=255)

                                                                   taattaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCa                                                                           >  1:1244525/1‑141 (MQ=255)

                                                                          aCTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTcc                                                                    <  3:209546/141‑1 (MQ=255)

                                                                           cTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCa                                                                   <  2:338707/141‑1 (MQ=255)

                                                                            tttATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCaa                                                                  >  3:13883/1‑141 (MQ=255)

                                                                              tATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGc                                                                <  2:1558557/141‑1 (MQ=255)

                                                                               aTTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCa                                                               >  3:17146/1‑141 (MQ=255)

                                                                               aTTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCa                                                               >  1:802431/1‑141 (MQ=255)

                                                                               aTTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCa                                                               <  3:396627/141‑1 (MQ=255)

                                                                                   tCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGCATACGTTTCGTTACCACTCGTCCAAGCAATTg                                                           >  2:9941/1‑141 (MQ=255)

                                                                                    cTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGc                                                          <  1:872484/141‑1 (MQ=255)

                                                                                     tAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCt                                                         >  4:583522/1‑141 (MQ=255)

                                                                                              cAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAAcc                                                <  4:498896/141‑1 (MQ=255)

                                                                                                   taaataaaATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTa                                           <  3:21852/141‑1 (MQ=255)

                                                                                                      ataaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAttt                                        >  2:843288/1‑141 (MQ=255)

                                                                                                       taaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtttt                                       <  3:659057/141‑1 (MQ=255)

                                                                                                       taaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTCTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCTTCCAAGCAATTGCTAATGTAACCTTTTAtttt                                       >  4:247269/1‑141 (MQ=255)

                                                                                                       aaaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtttt                                       <  4:708136/140‑1 (MQ=255)

                                                                                                        aaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaa                                       >  2:94662‑M2/1‑37 (MQ=255)

                                                                                                        aaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaa                                       <  1:94662‑M2/140‑104 (MQ=255)

                                                                                                        aaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAttttt                                      >  4:552107/1‑141 (MQ=255)

                                                                                                                gagTCAACCAAGGATTAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatga                              <  2:852791‑M2/141‑113 (MQ=255)

                                                                                                                gagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTaa                              >  1:557818/1‑141 (MQ=255)

                                                                                                                gagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTaa                              >  1:1069126/1‑141 (MQ=255)

                                                                                                                gagTCAACCAAGGATTAAAATAGGAATCCATCATTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATTCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTaa                              >  2:150784/1‑141 (MQ=255)

                                                                                                                aagTCACCCAAGGATTAAAAAAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTaa                              <  1:1041766/140‑1 (MQ=255)

                                                                                                                   tCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTCTCATTAGTCATTGCGCTTGCCAATGTCATCTTTTATTTCTTGTTCTATTCt                           >  1:751660/1‑141 (MQ=255)

                                                                                                                     aaCCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGc                         <  2:1413688/141‑1 (MQ=255)

                                                                                                                     aaCCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGNTTTTACACGATGCTGCGGTATACGTTTCGTTACCTCTCGTCCAAGCAATTGCTAANGTANCCTTTTATNTTTCGTTCTAATCTGc                         <  1:1507879/141‑1 (MQ=255)

                                                                                                                     aaCCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCCGTTGTTTGTATTGTTTTTAAACGACGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCCATTCCTAATGTCACCTTCTATCATCCGTTCTAATCTGc                         >  1:1319280/1‑141 (MQ=255)

                                                                                                                        cAAGGATTAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatgactttcttt                      <  2:380301‑M2/141‑121 (MQ=255)

                                                                                                                         aaGGATTAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatgactttcttta                     <  2:613939‑M2/141‑122 (MQ=255)

                                                                                                                           ggATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTAc                   <  1:636482/141‑1 (MQ=255)

                                                                                                                           ggATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTAc                   <  2:1533094/141‑1 (MQ=255)

                                                                                                                              ttAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttttaaaatagcaatgattttctttatatct                <  3:522860‑M2/141‑127 (MQ=255)

                                                                                                                              ttAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatgactttctttatatcg                <  2:508341‑M2/141‑127 (MQ=255)

                                                                                                                              ttAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatgactttctttatatcg                <  2:650164‑M2/141‑127 (MQ=255)

                                                                                                                              ttAAAATAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatgactttctttatatcg                <  1:192876‑M2/141‑127 (MQ=255)

                                                                                                                               tAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTAtt               >  2:352737/1‑141 (MQ=255)

                                                                                                                               tAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTAtt               >  4:429202/1‑141 (MQ=255)

                                                                                                                               tAAAATAGAAATCCATCCTTTTTTTACTTTCTTTTGTTTCTATTGCTTTAACACGATGCTGCTGTTTACGTTTCGTTTCCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTAtt               <  3:421249/141‑1 (MQ=255)

                                                                                                                                aaaaTAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcatttctactttgaaatctaaggtttctaaaatagcaatgactttctttatatcggt              <  1:255067‑M2/141‑129 (MQ=255)

                                                                                                                                aaaaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTGTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTAttt              >  2:352921/1‑141 (MQ=255)

                                                                                                                                 aaaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTc             >  1:1061756/1‑141 (MQ=255)

                                                                                                                                 aaaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTc             <  1:205067/141‑1 (MQ=255)

                                                                                                                                  aaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACTACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTCa            >  3:598947/1‑141 (MQ=255)

                                                                                                                                  aaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTCa            <  1:1236479/141‑1 (MQ=255)

                                                                                                                                  aaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTCa            >  1:812374/1‑141 (MQ=255)

                                                                                                                                   aTAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcat                                                                    <  4:291914‑M2/84‑75 (MQ=255)

                                                                                                                                   aTAGGAATCCatccttggttgactctttattttatttaaattgtagaacctagaaaataaagtttaattaaaagcaccaatcat                                                                    >  3:291914‑M2/1‑10 (MQ=255)

                                                                                                                                          tccatccTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTCAATGGCAGt    >  4:529509/1‑141 (MQ=255)

CCGATATAAAGAAAGTCATTGCTATTTTAGAAACCTTAGATTTCAAAGTAGAAATGATTGGTGCTTTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTCGTTCTAATCTGCAATTACTATTTCAATGGCAGTGG  >  USA300TCH1516_ALE/2062846‑2063126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.