BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082639 =	149 (0.820)	8 (0.050)	8/242	NT	5.5%	intergenic (+280/+44)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082667 =	135 (0.780)	8 (0.050)	8/242	NT	5.5%	intergenic (+308/+16)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 178 total aligned reads displayed.

AGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACACTG  >  USA300TCH1516_ALE/2082528‑2082807

aGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttat                                                                                                                                             >  4:185963/1‑141 (MQ=255)

aGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttat                                                                                                                                             >  2:160162/1‑141 (MQ=255)

   tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                                                                          <  4:707015/141‑1 (MQ=255)

     aaatatgtagacttaaaaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcaccccacgattgtgagatgccttATTATaa                                                                                                                                        <  1:1002069‑M2/7‑1 (MQ=255)

     aaaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaa                                                                                                                                        >  1:894484/1‑141 (MQ=255)

     aaaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaa                                                                                                                                        >  2:1548340/1‑141 (MQ=255)

      aaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaaa                                                                                                                                       >  1:157820/1‑141 (MQ=255)

          tAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTa                                                                                                                                   <  3:697137/141‑1 (MQ=255)

          tAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTa                                                                                                                                   <  2:199830/141‑1 (MQ=255)

           aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaa                                                                                                                                  >  2:107386/1‑141 (MQ=255)

           aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaa                                                                                                                                  >  4:560797/1‑141 (MQ=255)

            aaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaaa                                                                                                                                 >  2:505622/1‑141 (MQ=255)

            aaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACACCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaaa                                                                                                                                 >  1:1434632/1‑141 (MQ=255)

               aaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAt                                                                                                                              >  1:344076/1‑141 (MQ=255)

                aCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                                                                             <  3:488050/141‑1 (MQ=255)

                aCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                                                                             <  2:688032/141‑1 (MQ=255)

                  tttttCTATCAGTCCGATTTATTATAGAACCAATATATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAg                                                                                                                           >  3:192270/1‑141 (MQ=255)

                    tttCTATCAGTCCGATTTCTTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGaa                                                                                                                         <  1:1261715/141‑1 (MQ=255)

                        tATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTa                                                                                                                     >  1:256133/1‑141 (MQ=255)

                           cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                                                                  <  1:1181172/141‑1 (MQ=255)

                           cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                                                                  >  4:177645/1‑141 (MQ=255)

                             gTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTc                                                                                                                <  3:495466/141‑1 (MQ=255)

                              tCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCa                                                                                                               >  2:379935/1‑141 (MQ=255)

                                 gATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAata                                                                                                            <  2:971629/141‑1 (MQ=255)

                                    ttattaTAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCt                                                                                                         >  4:690289/1‑141 (MQ=255)

                                       ttatAGNACCAATTTATNNAACTTTTGGCAAATNACTNCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAcc                                                                                                      >  3:664028/1‑141 (MQ=255)

                                         ataGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                                                                                                    <  1:279108/141‑1 (MQ=255)

                                         ataGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                                                                                                    >  1:33919/1‑141 (MQ=255)

                                          taGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttt                                                                                                   <  4:418608/141‑1 (MQ=255)

                                             aaCCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTa                                                                                                >  2:532043/1‑141 (MQ=255)

                                              atttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcaccccacgattgtgagatgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTaa                                                                                               <  1:447976‑M2/48‑1 (MQ=255)

                                                cAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATg                                                                                             <  3:64330/141‑1 (MQ=255)

                                                  aTTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTc                                                                                           <  2:89387/141‑1 (MQ=255)

                                                  aTTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTc                                                                                           >  2:184657/1‑141 (MQ=255)

                                                   tttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCa                                                                                          <  1:1240752/141‑1 (MQ=255)

                                                   tttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTGTAATGTCa                                                                                          >  1:654558/1‑141 (MQ=255)

                                                     tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGt                                                                                        <  4:226385/141‑1 (MQ=255)

                                                      atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTCTTTAATGTCAGtt                                                                                       >  2:742693/1‑141 (MQ=255)

                                                       tataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTg                                                                                      <  2:769021/141‑1 (MQ=255)

                                                        ataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGc                                                                                     >  1:749759/1‑141 (MQ=255)

                                                         taACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                                                                    <  1:389450/141‑1 (MQ=255)

                                                             ttttGGCAAATCACTTCAAACAGTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                                                                                <  1:1515127/141‑1 (MQ=255)

                                                              tttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGTCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                                                                               <  3:594017/141‑1 (MQ=255)

                                                              tttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                                                                               <  2:644139/141‑1 (MQ=255)

                                                                tGGCAACTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATa                                                                             <  1:348091/141‑1 (MQ=255)

                                                                 ggCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATAc                                                                            >  2:1157635/1‑141 (MQ=255)

                                                                   cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                                                                          >  1:943965/1‑141 (MQ=255)

                                                                       tCACTTCAAACATTCAAGCATTCCATCTCTACAAATTTAAAATGCACCTCACGATTGTGATTTGCCTTATTATAATATTAAATATTAGAATTTAAGTTTAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTc                                                                      <  4:586957/141‑1 (MQ=255)

                                                                       tCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTTAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTc                                                                      <  1:178219/141‑1 (MQ=255)

                                                                             cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCt                                                                                                     >  2:248193/1‑104 (MQ=255)

                                                                                aCATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTtata                                                             <  4:261778/141‑1 (MQ=255)

                                                                                 cATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAc                                                            <  1:860896/141‑1 (MQ=255)

                                                                                   ttCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc                                                          <  2:475745/141‑1 (MQ=255)

                                                                                    tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCa                                                         >  1:1324694/1‑141 (MQ=255)

                                                                                    tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATCAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTAGCTATAAATACTCTCTCATCTTTATACTCa                                                         >  4:294397/1‑141 (MQ=255)

                                                                                       aGCATGACAACTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTGAATATCTACCTTTTTAATGTCAGTTGCTTTAGATACTCTTTCATCTTTGTACTTAGtt                                                      >  2:202640/1‑141 (MQ=255)

                                                                                        gCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGttt                                                     >  2:244609/1‑141 (MQ=255)

                                                                                         cATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGtttt                                                    >  2:191743/1‑141 (MQ=255)

                                                                                           ctaatctttaattttataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTAAACTTGTTACTCAGTTTTTa                                                  <  1:924411‑M1/121‑1 (MQ=255)

                                                                                              caTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGt                                               >  2:1632192/1‑141 (MQ=255)

                                                                                               aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTc                                              <  1:1471452/141‑1 (MQ=255)

                                                                                               aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTc                                              <  2:1215337/141‑1 (MQ=255)

                                                                                                 ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTa                                            >  1:432136/1‑141 (MQ=255)

                                                                                                 ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTa                                            <  4:157078/141‑1 (MQ=255)

                                                                                                 ctctACAAATGTAAAAGGCACCCCACGATTGTGAGAAGCCTTATTATAAAAATAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTa                                            <  1:1241917/141‑1 (MQ=255)

                                                                                                     aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACata                                        >  1:82862/1‑141 (MQ=255)

                                                                                                     aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACata                                        <  2:1185788/141‑1 (MQ=255)

                                                                                                       aaaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATAtt                                      >  1:775225/1‑141 (MQ=255)

                                                                                                        ttataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATAttt                                     <  1:1002069‑M1/134‑1 (MQ=255)

                                                                                                        aaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATAttt                                     >  2:776766/1‑141 (MQ=255)

                                                                                                           gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGa                                  >  3:140884/1‑141 (MQ=255)

                                                                                                            tAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGAc                                 <  1:1632192/141‑1 (MQ=255)

                                                                                                             aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAANTTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACg                                >  1:305589/1‑141 (MQ=255)

                                                                                                                AGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACa                                          >  2:1442964‑M1/1‑128 (MQ=255)

                                                                                                                AGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAAc                             <  2:1139877‑M1/141‑1 (MQ=255)

                                                                                                                   catctcacaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAt                          >  1:220234‑M2/25‑141 (MQ=255)

                                                                                                                     ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAttt                        <  2:566343/141‑1 (MQ=255)

                                                                                                                      cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAtttt                       <  3:245500/141‑1 (MQ=255)

                                                                                                                      cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAtttt                       <  3:430891/141‑1 (MQ=255)

                                                                                                                      cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAtttt                       >  2:1324679/1‑141 (MQ=255)

                                                                                                                      cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAtttt                       <  2:336668/141‑1 (MQ=255)

                                                                                                                      cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAtttt                       <  2:48839/141‑1 (MQ=255)

                                                                                                                       ccACGATTGTGAGATGCCTTATTATAAAATTAAGGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAttttt                      >  1:519691/1‑141 (MQ=255)

                                                                                                                       ccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAttttt                      <  1:1393593/141‑1 (MQ=255)

                                                                                                                       ccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAttttt                      <  2:894484/141‑1 (MQ=255)

                                                                                                                          cGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTaaa                   <  3:169777/141‑1 (MQ=255)

                                                                                                                           gATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATGTTTTGACGAACCATTTTTaaaa                  <  2:1658993/141‑1 (MQ=255)

                                                                                                                           gATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTaaaa                  >  1:246239/1‑141 (MQ=255)

                                                                                                                           aatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCa                           >  4:653069‑M2/17‑132 (MQ=255)

                                                                                                                            aTTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAAt                 <  1:107386/141‑1 (MQ=255)

                                                                                                                             ttGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATa                >  3:475811/1‑141 (MQ=255)

                                                                                                                             ttGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATa                >  1:1435637/1‑141 (MQ=255)

                                                                                                                              tgtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATac               >  1:725216/1‑141 (MQ=255)

                                                                                                                              tgtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATac               >  2:274643/1‑141 (MQ=255)

                                                                                                                               gtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATaca              >  2:964145/1‑141 (MQ=255)

                                                                                                                                 gagaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACt            >  2:1291087/1‑141 (MQ=255)

                                                                                                                                    aTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTta         <  1:916028/141‑1 (MQ=255)

                                                                                                                                    aTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTta         >  2:1112332/1‑141 (MQ=255)

                                                                                                                                      gccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTtata       >  1:534923‑M2/6‑141 (MQ=255)

                                                                                                                                           attatAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAGTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACACTg  >  2:839372/1‑141 (MQ=255)

AGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACACTG  >  USA300TCH1516_ALE/2082528‑2082807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.