BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2716752	154 (0.840)	9 (0.050)	7/232	NT	5.5%	intergenic (+60/+90)	USA300HOU_RS13965/USA300HOU_RS13970	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2716804	168 (1.010)	9 (0.050)	7/232	NT	5.5%	intergenic (+112/+38)	USA300HOU_RS13965/USA300HOU_RS13970	hypothetical protein/hypothetical protein

Only 100 of 260 total aligned reads displayed.

CAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCT  >  USA300TCH1516_ALE/2716666‑2716944

  acaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat                                                                                                                                           <  3:580322‑M2/141‑5 (MQ=255)

  acaaTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtat                                                                                                                                           >  1:819008‑M2/1‑137 (MQ=255)

     ttcaaagatcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATggg                                                                                                                                        >  2:756027‑M1/72‑141 (MQ=255)

     aTACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatggg                                                                                                                                        >  4:562309‑M2/1‑134 (MQ=255)

        cGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctt                                                                                                                                     <  1:1007733‑M2/141‑11 (MQ=255)

         ggTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggcttt                                                                                                                                    >  2:716269‑M2/1‑130 (MQ=255)

         ggTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggcttt                                                                                                                                    <  2:432012‑M2/141‑12 (MQ=255)

            atcttgatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataactaaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta                                                                                                                                 >  1:1159425‑M1/65‑141 (MQ=255)

             atatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑t                                                                                                                               <  2:588657/141‑1 (MQ=255)

              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATACACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑tt                                                                                                                              <  3:187250/141‑1 (MQ=255)

              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑tt                                                                                                                              <  2:1606656/141‑1 (MQ=255)

              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑tt                                                                                                                              <  1:1522052/141‑1 (MQ=255)

              tatTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑tt                                                                                                                              <  2:1038475/141‑1 (MQ=255)

               atTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑ttt                                                                                                                             <  2:940006/141‑1 (MQ=255)

                 gatggacaccattttaattttttggtctgctaaaatgaaattctcaaaagaataaataaAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTa                                                                                                                                            <  4:678297‑M1/66‑1 (MQ=255)

                   aaaaTTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTc                                                                                                                         <  1:231320/141‑1 (MQ=255)

                         aaTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTga                                                                                                                   >  1:441358/1‑141 (MQ=255)

                         aaTATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTga                                                                                                                   >  1:1328686/1‑141 (MQ=255)

                           tatTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTgaga                                                                                                                 <  1:147958/141‑1 (MQ=255)

                            atTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGaa                                                                                                                <  2:487463/141‑1 (MQ=255)

                             tttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAAt                                                                                                               <  3:366612/141‑1 (MQ=255)

                              ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAAtt                                                                                                              <  1:542371/141‑1 (MQ=255)

                              ttGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAAtt                                                                                                              >  2:116636/1‑141 (MQ=255)

                               tGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAAttt                                                                                                             >  1:1632092/1‑141 (MQ=255)

                                gCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTc                                                                                                            >  3:222764/1‑141 (MQ=255)

                                  tCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCAt                                                                                                          <  3:553417/141‑1 (MQ=255)

                                   cACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCAtt                                                                                                         >  1:1138200/1‑141 (MQ=255)

                                        ggTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGc                                                                                                    <  2:982748/141‑1 (MQ=255)

                                        ggTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGc                                                                                                    >  1:1190785/1‑141 (MQ=255)

                                         gTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCACATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGCATGGGCTTTTTA‑TTTATTCTTTTGAGACTTTCATCTTAGCa                                                                                                   >  2:1424226/1‑141 (MQ=255)

                                          tATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAg                                                                                                  <  1:859285/141‑1 (MQ=255)

                                          tATTGCACGTAAGGTGCCAACTGACTGCATAATCAAAGCCCATACTGATTGAAGACACTAATGTTTCTCACCATGTTGTACATTACGCTTCCTCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAAGTTCATTTTAGCAg                                                                                                  <  4:177386/141‑1 (MQ=255)

                                               cACTTAAGGGGCCAACTGGCCTCATAAACAAAGCTCATACTTATTGAAGACACTAATGTGTCTCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCaa                                                                                             <  1:1575601/141‑1 (MQ=255)

                                                aCTTAAGGTGCCAACCGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCaaa                                                                                            <  2:155584/141‑1 (MQ=255)

                                                    aaGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                                                                        <  1:94125/141‑1 (MQ=255)

                                                     aGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAtt                                                                                       >  1:270592/1‑141 (MQ=255)

                                                     aGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAtt                                                                                       >  4:380484/1‑141 (MQ=255)

                                                      ggTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTa                                                                                      >  1:770515/1‑141 (MQ=255)

                                                       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTttta‑tt                                                                                                                              <  2:1025491/100‑1 (MQ=255)

                                                       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaa                                                                                     >  2:1641731/1‑141 (MQ=255)

                                                       gTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTaa                                                                                     <  1:666695/141‑1 (MQ=255)

                                                                  ccTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCa                                                                          <  3:46358/141‑1 (MQ=255)

                                                                  ccTCAAAAACAAAGACCATACTGATTGAAGACACTAATGTGTCGCATCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCTTTTAAAAAAAAAAAAAAATTAAAATGGTGTCCa                                                                          <  2:1623179/141‑1 (MQ=255)

                                                                   cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCGGACCAAAAAATTAAAATGGTGTCCAt                                                                         >  2:1434798/1‑141 (MQ=255)

                                                                   cTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCAt                                                                         <  1:802875/141‑1 (MQ=255)

                                                                        aaaCAAAGCCCATACCGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGa                                                                    >  4:610490/1‑141 (MQ=255)

                                                                          aCAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATc                                                                  <  1:127807/141‑1 (MQ=255)

                                                                            AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt                                                                <  1:1358262‑M1/141‑1 (MQ=255)

                                                                            AAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCAAATTACGCTTCATCTCTGTATGCTCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCtt                                                                >  1:744704‑M1/1‑141 (MQ=255)

                                                                              AGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTg                                                              >  2:44665‑M1/1‑141 (MQ=255)

                                                                               GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGa                                                             <  1:318708‑M1/141‑1 (MQ=255)

                                                                               GCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGa                                                             <  3:162271‑M1/141‑1 (MQ=255)

                                                                                CCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGaa                                                            >  1:484892‑M1/1‑141 (MQ=255)

                                                                                 CCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAAc                                                           >  2:914996‑M1/1‑141 (MQ=255)

                                                                                   ttACTGATTGAGGACACTAATGTGTCGCTCTAAGGTGCACATTACGCTTCATCTCTGTATGGGCCTTTTA‑TTTATTCTTTTGAGACTGTCATTTTAGCAGACCAAAAAATTATAATTGTCTCAATCCAGATCCTTGAAcct                                                         <  2:629570/140‑3 (MQ=255)

                                                                                        gATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTgtatgggctttgtttatgaggtcagttggcaccttaagtgcaatacctcgtgagcaaatattaattttgaatataaccgtattgttggcg                                                     <  2:295242‑M2/141‑91 (MQ=255)

                                                                                          ttGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTccc                                                  >  2:112996/1‑140 (MQ=255)

                                                                                           tGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCAt                                                 <  3:603350/141‑1 (MQ=255)

                                                                                            gAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATa                                                >  1:708073/1‑141 (MQ=255)

                                                                                            gAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATa                                                >  2:610526/1‑141 (MQ=255)

                                                                                             aaGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaa                                               <  1:1547534/141‑1 (MQ=255)

                                                                                              aGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaa                                              >  2:510396/1‑141 (MQ=255)

                                                                                              aGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATaaa                                              <  2:639575/141‑1 (MQ=255)

                                                                                                  acTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGTAGGCTATGAAATTAAAATGGTGTCCATCAAGATCTTTGCACATTGCTCCATAAAAccc                                          >  1:1350055/1‑141 (MQ=255)

                                                                                                     ttagtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTg                                       >  1:1468992/4‑141 (MQ=255)

                                                                                                        ttgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCt                                    <  1:643491/140‑1 (MQ=255)

                                                                                                        gtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAAt                                                                                        <  1:670254/89‑1 (MQ=255)

                                                                                                        gtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCt                                    <  1:1649373/141‑1 (MQ=255)

                                                                                                        gtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCt                                    <  3:680469/141‑1 (MQ=255)

                                                                                                        gtgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCt                                    <  1:39058/141‑1 (MQ=255)

                                                                                                         tgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCtt                                   <  1:1450215/141‑1 (MQ=255)

                                                                                                         tgtCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCtt                                   >  2:1217106/1‑141 (MQ=255)

                                                                                                           tCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTAc                                 >  3:114134/1‑141 (MQ=255)

                                                                                                           tCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTAAGCAGAACAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTAc                                 <  2:166234/141‑1 (MQ=255)

                                                                                                           tCGCACCATGGTGCACATTACGCTTCATCCCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTAc                                 >  1:1042980/1‑141 (MQ=255)

                                                                                                            cGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACt                                >  3:478729/1‑141 (MQ=255)

                                                                                                             gCACCATGGTGCACAGTACGCTTCATCTCTGTATGGGCTTTGTA‑TTTATTCTTTTTATAATTTCATTTTATCAGACCAAACAATTAAACTAGTGTCCTTCAAGCTCTTTGAACGTTCTTCCTTAAAACCCTTGGCTTACTg                               >  4:40456/1‑141 (MQ=255)

                                                                                                              cACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGt                              <  2:1133026/141‑1 (MQ=255)

                                                                                                              cACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACAAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGt                              >  4:463823/1‑141 (MQ=255)

                                                                                                               aCCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGtt                             >  4:254705/1‑141 (MQ=255)

                                                                                                                ccttGGTGCACATTACGCTTCATCTCTGTATGGTCTTTTTA‑TTTATTCTTTTGATAATTTCATATTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTg                            <  2:556578/138‑1 (MQ=255)

                                                                                                                ccATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTg                            <  3:276748/141‑1 (MQ=255)

                                                                                                                ccATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTg                            >  4:312946/1‑141 (MQ=255)

                                                                                                                   tGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGtt                         >  4:432600/1‑141 (MQ=255)

                                                                                                                   tGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATAAAAGAAAAAAAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGtt                         <  2:1352964/141‑1 (MQ=255)

                                                                                                                       gCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTg                     >  2:971094/1‑141 (MQ=255)

                                                                                                                        cacaTTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGa                    <  2:1393968/141‑1 (MQ=255)

                                                                                                                        cacaTTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGa                    <  2:1444407/141‑1 (MQ=255)

                                                                                                                        cacaTTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGa                    >  2:1079383/1‑141 (MQ=255)

                                                                                                                           aTTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACg                 >  3:703744/1‑141 (MQ=255)

                                                                                                                           aTTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACg                 <  1:983627/141‑1 (MQ=255)

                                                                                                                               cGCTTCATCTCTGTATGGACTTTTTA‑TATATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACtg             <  2:374983/141‑1 (MQ=255)

                                                                                                                                gCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACtgt            <  3:77770/141‑1 (MQ=255)

                                                                                                                                  ttCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGc          <  1:244243/141‑1 (MQ=255)

                                                                                                                                    cATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCa        <  2:870468/141‑1 (MQ=255)

                                                                                                                                     aTCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCAc       <  2:202872/141‑1 (MQ=255)

                                                                                                                                      tctcTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCAcc      <  3:147158/141‑1 (MQ=255)

                                                                                                                                        tctGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCg    <  3:382900/141‑1 (MQ=255)

                                                                                                                                         ctGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGc   <  1:425131/141‑1 (MQ=255)

                                                                                                                                          tGTATGGGCTTTGTATTTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGc   <  2:268720/141‑1 (MQ=255)

CAACAATACGGTTATATTCAAAATTAATATTTGCTCACGAGGTATTGCACTTAAGGTGCCAACTGACCTCATAAACAAAGCCCATACTGATTGAAGACACTAATGTGTCGCACCATGGTGCACATTACGCTTCATCTCTGTATGGGCTTTTTA‑TTTATTCTTTTGAGAATTTCATTTTAGCAGACCAAAAAATTAAAATGGTGTCCATCAAGATCTTTGAACATTGCTCCATAAAACCCTTGGCTTACTGTTGGTTCTTGAACGACTGTGCCACCCGCT  >  USA300TCH1516_ALE/2716666‑2716944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.