Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 512,004 T→C 5.5% intergenic (+72/‑6691) recR → / → speA_2 Recombination protein RecR/Arginine decarboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE512,0040TC 5.5% 509.3 / 14.4 163intergenic (+72/‑6691)recR/speA_2Recombination protein RecR/Arginine decarboxylase
Reads supporting (aligned to +/- strand):  ref base T (73/81);  new base C (3/6);  total (76/87)
Fisher's exact test for biased strand distribution p-value = 5.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.50e-01

Only 100 of 167 total aligned reads displayed.

GGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAATGATGTGAATTG  >  USA300TCH1516_ALE/511864‑512144
                                                                                                                                             |                                                                                                                                            
ggTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCttttt                                                                                                                                              >  1:15414/1‑141 (MQ=255)
 gTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTt                                                                                                                                             >  3:592383‑M2/1‑140 (MQ=255)
 gTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTt                                                                                                                                             >  1:261335‑M2/1‑140 (MQ=255)
   ggCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTtta                                                                                                                                           >  3:392248‑M2/1‑138 (MQ=255)
   ggCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTtta                                                                                                                                           >  2:616641‑M2/1‑138 (MQ=255)
      gATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtgg                                                                                                                                        >  4:586682/1‑141 (MQ=255)
          tAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtg                                                                                                                                    <  4:341214/141‑1 (MQ=255)
           agagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtgg                                                                                                                                   <  2:1138017/141‑1 (MQ=255)
           agagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtgg                                                                                                                                   >  2:634221/1‑141 (MQ=255)
           agagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTTCttactatagta                                                                                                                                   >  2:573187‑M2/1‑130 (MQ=255)
            gagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTGATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                                                  <  2:827391/141‑1 (MQ=255)
            gagTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                                                  <  1:1518345/141‑1 (MQ=255)
            gagTATGCTGACGAAGTAACATTATCTAAAGCAACCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                                                  >  1:1255354/1‑141 (MQ=255)
            aagTATGCTGACGTAGTAACATTATCTAAAGCAATCGCAGGTAGAACAAAAATGTAATGTCTTCTATTACACATTTTTGATTTTAATACTATAGAAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggt                                                                                                                                  <  2:861974/140‑1 (MQ=255)
              gTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATggtgtggtgt                                                                                                                                >  2:607357/1‑141 (MQ=255)
                aTGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                                                                                                              >  4:299597/1‑141 (MQ=255)
                  gCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTTCttactatagtattaaaat                                                                                                                            >  2:1545418‑M2/1‑123 (MQ=255)
                      aCGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtact                                                                                                                        >  3:537747/1‑141 (MQ=255)
                      aCGAAGTAACATAATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTATTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTTTGGTGTGGAGTGATGtact                                                                                                                        >  4:451011/1‑141 (MQ=255)
                         aaGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTactact                                                                                                                     <  2:1334649/141‑1 (MQ=255)
                          aGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGGACTACtt                                                                                                                    >  2:89980/1‑141 (MQ=255)
                           gTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                                                                   >  2:205543/1‑141 (MQ=255)
                             aaCATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAt                                                                                                                 >  3:258775/1‑141 (MQ=255)
                               cATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAttt                                                                                                               <  1:386337/141‑1 (MQ=255)
                                  tATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCg                                                                                                            <  2:888663/141‑1 (MQ=255)
                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                                                           <  2:522532/141‑1 (MQ=255)
                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                                                           <  1:159391/141‑1 (MQ=255)
                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                                                           <  2:1500945/141‑1 (MQ=255)
                                   aTCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                                                                           <  1:943832/141‑1 (MQ=255)
                                    tCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgt                                                                                                          <  2:537176/141‑1 (MQ=255)
                                     cTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGTAAAGACACAGTGTTATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgtg                                                                                                         >  1:1313315/1‑141 (MQ=255)
                                     cTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGgtg                                                                                                         >  3:9414/1‑141 (MQ=255)
                                       aaaGCAATCGCCGGTAGAACGTTAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGtgtg                                                                                                       <  2:1157232/141‑1 (MQ=255)
                                         aGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGc                                                                                                     >  3:333511/1‑141 (MQ=255)
                                          gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                                                                    <  2:1109057/141‑1 (MQ=255)
                                          gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                                                                    <  1:277373/141‑1 (MQ=255)
                                          gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacatt                                                                                                    >  1:419078‑M2/1‑99 (MQ=255)
                                          gCAAGCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                                                                    <  1:766318/141‑1 (MQ=255)
                                            aaTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggt                                                                                                  <  1:221388/141‑1 (MQ=255)
                                             aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                                                                                 <  1:878113/141‑1 (MQ=255)
                                             aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                                                                                 <  3:532377/141‑1 (MQ=255)
                                             aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                                                                                 <  1:700365/141‑1 (MQ=255)
                                              tCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtgg                                                                                                >  3:97089/1‑141 (MQ=255)
                                              tCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtgg                                                                                                >  1:1218240/1‑141 (MQ=255)
                                                gCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa                                                                                              >  1:171425/1‑141 (MQ=255)
                                                   ggTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                                                                           <  3:115937/141‑1 (MQ=255)
                                                   ggTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                                                                           >  2:876847/1‑141 (MQ=255)
                                                     tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGtt                                                                                         <  3:34968/141‑1 (MQ=255)
                                                     tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGtt                                                                                         >  1:133458/1‑141 (MQ=255)
                                                      aGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGttt                                                                                        >  1:730721/1‑141 (MQ=255)
                                                      aGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGttt                                                                                        >  3:676029/1‑141 (MQ=255)
                                                       gAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTa                                                                                       >  2:1168435/1‑141 (MQ=255)
                                                        aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAc                                                                                      <  4:538710/141‑1 (MQ=255)
                                                        aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCAGTGTGGCGGTGGTATGGTTTAc                                                                                      <  1:1183889/141‑1 (MQ=255)
                                                          cAGAAATGTAATGTCTTCTATTAAACATTTTTTTTTTTATTACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTTTGGTTTActt                                                                                    >  4:415828/1‑139 (MQ=255)
                                                          cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCt                                                                                    <  4:388534/141‑1 (MQ=255)
                                                           aGAAATGTAATGTCTTCTATTAAACATTTTTTTTTTTTTTACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTa                                                                                   >  4:526895/1‑141 (MQ=255)
                                                            gagatgtaatgtCTTCTATTAAACATTTTTGATTGTAATACTATGGTAAGAGAAGTCACAGTGTAGTCAGTGTGGCTTGTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAg                                                                                  <  2:1655833/138‑1 (MQ=255)
                                                             aaaTGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGt                                                                                 >  2:1435676/1‑141 (MQ=255)
                                                                tgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGtttt                                                                              <  1:81838/141‑1 (MQ=255)
                                                                   aatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACt                                                                           <  1:642889/141‑1 (MQ=255)
                                                                      gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAg                                                                        <  1:791366/141‑1 (MQ=255)
                                                                        cttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAggg                                                                      >  2:1104871/1‑141 (MQ=255)
                                                                         ttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGa                                                                     <  2:1079726/141‑1 (MQ=255)
                                                                            tATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATgg                                                                  <  4:689341/141‑1 (MQ=255)
                                                                             aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATggg                                                                 >  1:1390025/1‑141 (MQ=255)
                                                                              ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGCGGGCTGGGt                                                                <  2:738285/141‑1 (MQ=255)
                                                                              ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt                                                                <  2:15414/141‑1 (MQ=255)
                                                                              ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt                                                                <  3:72557/141‑1 (MQ=255)
                                                                                aaaCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGt                                                                                 <  4:189936/122‑1 (MQ=255)
                                                                                  aCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATc                                                            <  3:612193/141‑1 (MQ=255)
                                                                                       tttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAg                                                       <  1:569185/141‑1 (MQ=255)
                                                                                        ttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAgg                                                      <  2:527767/141‑1 (MQ=255)
                                                                                            ttttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTATGGGGTGGTGTGGTGTAATACTTTTTTTGCGGTGTGGCGGGGGGTTGGTTTTCCTGGTTTTGCTGGGGGGTTGGTAATCTTTAGGaaaca                                                 >  3:629000/1‑141 (MQ=255)
                                                                                             tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGaagca                                                 >  3:618725/1‑141 (MQ=255)
                                                                                                 aTACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGcc                                             >  1:716509/1‑141 (MQ=255)
                                                                                                   aCTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgt                                           <  1:521865/141‑1 (MQ=255)
                                                                                                   aCTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgt                                           <  1:1162808/141‑1 (MQ=255)
                                                                                                      ataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgttgg                                        >  1:188661/1‑141 (MQ=255)
                                                                                                      ataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCgttgg                                        >  3:129608/1‑141 (MQ=255)
                                                                                                             gAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGAt                                 <  2:350676/141‑1 (MQ=255)
                                                                                                              aaaaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGAtt                                <  1:751241/141‑1 (MQ=255)
                                                                                                              aaaaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGAtt                                >  1:424586/1‑141 (MQ=255)
                                                                                                                 aGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGt                             <  1:819771/141‑1 (MQ=255)
                                                                                                                   tCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTa                           <  1:1012947/141‑1 (MQ=255)
                                                                                                                   tCACAGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgccacctaccga                           <  2:742232‑M2/141‑116 (MQ=255)
                                                                                                                   tCACAGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgccacctaccga                           <  2:289402‑M2/141‑116 (MQ=255)
                                                                                                                    cacaGTGTAATCATTGTGGCTTTTTTTTTGTTTTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTAc                          >  2:820449/1‑141 (MQ=255)
                                                                                                                     acaGTGTAATCATTGTGGCTTTTTTTTTGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACt                         >  2:694115/1‑141 (MQ=255)
                                                                                                                     acaGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgccacctaccgata                         <  2:31884‑M2/141‑118 (MQ=255)
                                                                                                                      caGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgattgctttagataatgttacttcgtcagcatactctaaatcgccacctaccgataa                        <  2:246203‑M2/141‑119 (MQ=255)
                                                                                                                       aGTGTAATCATTGTGGGTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTc                       >  1:478633/1‑141 (MQ=255)
                                                                                                                         tgtAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTa                     <  4:488105/141‑1 (MQ=255)
                                                                                                                                    gtgGCTTTTTTTTTTTTTTTTTTTGATGTAATACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGTGGGATGGGTAATCTTTAGGAAGCAAGCTGTTGGTTGTGATTTGTTACTTCTAATAGTAatga           >  4:264522/1‑141 (MQ=255)
                                                                                                                                    gtgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAatga           <  4:93349/141‑1 (MQ=255)
                                                                                                                                     tgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAatgat          >  3:87947/1‑141 (MQ=255)
                                                                                                                                      ggCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAatgatg         <  2:1390025/141‑1 (MQ=255)
                                                                                                                                       gCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAATGAtgt        <  4:374234/141‑1 (MQ=255)
                                                                                                                                       gCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAATGAtgt        >  1:1109217/1‑141 (MQ=255)
                                                                                                                                             tttATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAATGATGTGAATTg  >  1:979718/1‑141 (MQ=255)
                                                                                                                                             |                                                                                                                                            
GGTGGCGATTTAGAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAAGCAAGCCGTTGGTTGTGATTTGTTACTTCTAATAGTAATGATGTGAATTG  >  USA300TCH1516_ALE/511864‑512144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: