Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 950,098 T→A 5.1% intergenic (+92/‑270) yugI_2 → / → USA300HOU_RS04740 General stress protein 13/putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE950,0980TA 5.1% 750.5 / 23.0 214intergenic (+92/‑270)yugI_2/USA300HOU_RS04740General stress protein 13/putative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (94/109);  new base A (6/5);  total (100/114)
Fisher's exact test for biased strand distribution p-value = 7.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01

Only 100 of 221 total aligned reads displayed.

CTTACCAATCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGATTTGTTTTT  >  USA300TCH1516_ALE/949958‑950237
                                                                                                                                            |                                                                                                                                           
cTTACCAATCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTttat                                                                                                                                             >  2:1190633/1‑141 (MQ=255)
  tACCAATCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTttatta                                                                                                                                           >  2:337499/1‑141 (MQ=255)
   aCCAATCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAg                                                                                                                                          >  2:687689/1‑141 (MQ=255)
        tCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACt                                                                                                                                     <  2:670530/141‑1 (MQ=255)
        tCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACt                                                                                                                                     <  1:704012/141‑1 (MQ=255)
          tGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTaa                                                                                                                                   <  2:400349/141‑1 (MQ=255)
          tGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTaa                                                                                                                                   <  1:1552581/141‑1 (MQ=255)
           ggATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTAATAAAATTTAATAGATACTAAt                                                                                                                                  <  2:1273532/141‑1 (MQ=255)
            gATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTCTCTATTAAATTTTATTAGATACTAAtc                                                                                                                                 <  3:161197/141‑1 (MQ=255)
            gATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAAtc                                                                                                                                 <  1:861654/141‑1 (MQ=255)
              tAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGAGTAGTATCTATTAAATTTTATTAGATACTAAtctc                                                                                                                               <  1:1625543/141‑1 (MQ=255)
              tAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAAAAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTAATAAAATTTAATAGATACTAAtctc                                                                                                                               <  4:322207/141‑1 (MQ=38)
                aaaCAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCtt                                                                                                                             <  2:1604873/141‑1 (MQ=255)
                 aaCAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCttt                                                                                                                            <  3:412844/141‑1 (MQ=255)
                    aGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTg                                                                                                                         <  1:85114/141‑1 (MQ=255)
                    aGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTg                                                                                                                         <  1:1360840/141‑1 (MQ=255)
                       cAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCtt                                                                                                                             >  2:1301500/1‑134 (MQ=255)
                          aGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACg                                                                                                                   >  1:875048/1‑141 (MQ=255)
                               gCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATaat                                                                                                              <  4:174832/141‑2 (MQ=255)
                               gCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAAc                                                                                                              >  2:263723/1‑141 (MQ=255)
                                 aaTTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTCTAAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGt                                                                                                            <  1:540430/141‑1 (MQ=255)
                                 aaTTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGt                                                                                                            >  1:1368002/1‑141 (MQ=255)
                                 aaTTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGt                                                                                                            >  3:556433/1‑141 (MQ=255)
                                   ttCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTaa                                                                                                          <  2:1336128/141‑1 (MQ=255)
                                   ttCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTaa                                                                                                          <  1:11806/141‑1 (MQ=255)
                                     cGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAata                                                                                                        >  1:174594/1‑141 (MQ=255)
                                     cGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAata                                                                                                        <  1:334527/141‑1 (MQ=255)
                                       aaaCGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATAtg                                                                                                      >  2:1525289/1‑141 (MQ=255)
                                        aaCGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATAtga                                                                                                     >  1:94784/1‑141 (MQ=255)
                                          cGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATAtgatt                                                                                                   <  4:61313/141‑1 (MQ=255)
                                          cGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATAtgatt                                                                                                   >  1:692368/1‑141 (MQ=255)
                                          cGACTAAAGGAACAGACAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATAtgatg                                                                                                   <  2:1460405/141‑2 (MQ=255)
                                               aaaatgtcAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTCATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTc                                                                                              <  1:1282867/134‑1 (MQ=255)
                                               aaaGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTc                                                                                              <  2:94771/141‑1 (MQ=255)
                                                aaGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCt                                                                                             >  1:1063004/1‑141 (MQ=255)
                                                  ggAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTAt                                                                                           <  1:907786/141‑1 (MQ=255)
                                                   gacgcgATACATCGTCCCGAAAATCATACGAAGGGTCTGAAATGGAAGTTTCTTAGACTATCAATGAGCTTAGTATCTATTACATTTTATTCGATACTACTCTCTTTTTGTCTACGATAACGTAATCTGATTGATTATAtt                                                                                          <  4:165535/136‑1 (MQ=255)
                                                   gAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTAtt                                                                                          <  1:1640019/141‑1 (MQ=255)
                                                     aCAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTa                                                                                        >  4:541415/1‑141 (MQ=255)
                                                       aGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTaca                                                                                      >  4:216804/1‑141 (MQ=255)
                                                         aTAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACg                                                                                    >  1:1489735/1‑141 (MQ=255)
                                                         aTAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACg                                                                                    >  2:724943/1‑141 (MQ=255)
                                                         aTAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACg                                                                                    <  2:1445121/141‑1 (MQ=255)
                                                          tAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGt                                                                                   <  2:1392620/141‑1 (MQ=255)
                                                          tAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGt                                                                                   <  1:1027874/141‑1 (MQ=255)
                                                          tAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGt                                                                                   <  1:1585536/141‑1 (MQ=255)
                                                          tAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGt                                                                                   <  1:784452/141‑1 (MQ=255)
                                                          tAAATCGTACCGAAAATCATAAAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGt                                                                                   <  2:1157961/141‑1 (MQ=255)
                                                              tCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACaa                                                                               <  4:498774/141‑1 (MQ=255)
                                                               cGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGCGATGAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACaaa                                                                              <  1:1607892/141‑1 (MQ=255)
                                                               cGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACaaa                                                                              >  2:226662/1‑141 (MQ=255)
                                                               cGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACaaa                                                                              <  2:800522/141‑1 (MQ=255)
                                                                  aCCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATgg                                                                           >  1:1504613/1‑141 (MQ=255)
                                                                  aCCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATgg                                                                           >  2:791321/1‑141 (MQ=255)
                                                                    cGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAATTAGtt                                                                         >  4:399222/1‑141 (MQ=255)
                                                                       aaaTCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTaa                                                                      >  2:492892/1‑141 (MQ=255)
                                                                            aTACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGa                                                                 >  1:273713/1‑141 (MQ=255)
                                                                            aTACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGa                                                                 <  2:1039218/141‑1 (MQ=255)
                                                                             tACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGAc                                                                >  2:544706/1‑141 (MQ=255)
                                                                               cAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACat                                                              >  1:1146130/1‑141 (MQ=255)
                                                                                 aacggTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTATACGAGAACGTAATATGATTGNTTCNATTTACACGTACAANTGGTTTAAGGTGACatat                                                            <  3:546875/138‑1 (MQ=255)
                                                                                   gggTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATcc                                                          <  1:1175680/141‑1 (MQ=255)
                                                                                   gggTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATcc                                                          <  2:189708/141‑1 (MQ=255)
                                                                                   gggTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATcc                                                          <  1:9779/141‑1 (MQ=255)
                                                                                   gggTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATcc                                                          >  2:1047562/1‑141 (MQ=255)
                                                                                    ggTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCa                                                         <  1:1267055/141‑1 (MQ=255)
                                                                                     gTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCAt                                                        <  1:1097351/141‑1 (MQ=255)
                                                                                      tCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCAtt                                                       <  2:1633107/141‑1 (MQ=255)
                                                                                       gtgaaatgaaaGTTTCTTAGACTATAAAAGAGATGAGTATTTATTAAATTTTATTATATACTAATCTCTTTTGGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTa                                                      <  3:317423/140‑1 (MQ=255)
                                                                                       cTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTa                                                      <  2:141870/141‑1 (MQ=255)
                                                                                       cTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTa                                                      <  2:351274/141‑1 (MQ=255)
                                                                                       cTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTa                                                      <  2:1505688/141‑1 (MQ=255)
                                                                                       cTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTa                                                      <  1:834678/141‑1 (MQ=255)
                                                                                          aaatgaaaGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCt                                                   <  3:496939/141‑1 (MQ=255)
                                                                                          aaatgaaaGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCt                                                   <  1:1616646/141‑1 (MQ=255)
                                                                                                 aGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATAtgatt                                                                                                   >  2:1491856/1‑86 (MQ=255)
                                                                                                 aGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTtag                                            >  2:290278/1‑141 (MQ=255)
                                                                                                 aGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTtag                                            >  2:849743/1‑141 (MQ=255)
                                                                                                  gTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTtaga                                           <  1:686848/141‑1 (MQ=255)
                                                                                                     tCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAGATGGTTTAAGGTGACATATCCATTATCTTTGTtagatag                                        >  1:1222082/1‑141 (MQ=255)
                                                                                                      cTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTtagataga                                       >  3:254085/1‑141 (MQ=255)
                                                                                                        tAGACTATAAAAGAGATTAGTATCTATTAAGTTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAAt                                     >  3:121897/1‑141 (MQ=255)
                                                                                                                  aaGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTCTTTCAAAGTCCACATGGTTTACGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTg                           >  1:571222/1‑141 (MQ=255)
                                                                                                                  aaGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAATGTGACATATCCATTATCTTTGTTAGATAGAATCGTAGATTTg                           >  2:1582973/1‑141 (MQ=255)
                                                                                                                  aaGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTg                           >  1:179236/1‑141 (MQ=255)
                                                                                                                  aaGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATCATCTTTGTTAGATAGAATCGTTGATTTg                           >  1:1494981/1‑141 (MQ=255)
                                                                                                                    gagaTTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCa                         >  4:358130/1‑141 (MQ=255)
                                                                                                                      gaTTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTTTTTTTTTTTTTTTAATATGATTGATTCTATTTACACTTACAAATGGTTTAAGGTGAAATATCCATTATCTTTGTTATATATAATAGTTGAttttaaat                       >  2:365923/1‑136 (MQ=255)
                                                                                                                      gaTTAGTATCTAATAAAATTTAATAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAat                       >  4:572401/1‑141 (MQ=255)
                                                                                                                        ttAGTATCTAATAAAATTTAATAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAatat                     >  2:631483/1‑141 (MQ=255)
                                                                                                                         tAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATAtt                    >  4:258794/1‑141 (MQ=255)
                                                                                                                             aTCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTAt                <  1:621055/141‑1 (MQ=255)
                                                                                                                              tCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTAtg               <  4:625750/141‑1 (MQ=255)
                                                                                                                               ctaatAAAATTTAATAGATACTAATCTCTTTTTTTTTTTTTTTACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTAtgt              >  2:1017470/5‑141 (MQ=255)
                                                                                                                               cTAATAAAATTTAATAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTAtgt              >  1:1014330/1‑141 (MQ=255)
                                                                                                                                     aaTTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGAttt        <  1:443295/141‑1 (MQ=255)
                                                                                                                                        tttATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGATTTGt      <  3:555860/140‑1 (MQ=255)
                                                                                                                                        tttATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGATTTGt      >  4:555860/1‑140 (MQ=255)
                                                                                                                                           attaGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGATTTGttttt  >  3:83496/1‑141 (MQ=255)
                                                                                                                                           attaGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGATTTGttttt  >  1:162433/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CTTACCAATCTGGATAAAACAGTCAAAGCGAGCAATTCGAAACGACTAAAGGAACAGATAAATCGTACCGAAAATCATACAAAGGGTCTGAAATGAAAGTTTCTTAGACTATAAAAGAGATTAGTATCTATTAAATTTTATTAGATACTAATCTCTTTTTGTCTACGATAACGTAATATGATTGATTCTATTTACACGTACAAATGGTTTAAGGTGACATATCCATTATCTTTGTTAGATAGAATCGTTGATTTGCAATATTGTATGTGGATTTGTTTTT  >  USA300TCH1516_ALE/949958‑950237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: