Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000731 12,017 C→T 6.4% intergenic (+180/+43) USA300HOU_pUSA300HOUMR0014 → / ← USA300HOU_pUSA300HOUMR0015 recombinase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073112,0170CT 6.4% 1363.8 / 50.0 431intergenic (+180/+43)USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015recombinase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (196/205);  new base T (12/16);  total (210/221)
Fisher's exact test for biased strand distribution p-value = 5.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 434 total aligned reads displayed.

ATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAACCGAAC  >  CP000731/11877‑12157
                                                                                                                                            |                                                                                                                                            
 ttttATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCg                                                                                                                                             <  3:443106/141‑1 (MQ=255)
  tttATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGt                                                                                                                                            <  2:1073263/141‑1 (MQ=255)
   ttATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTa                                                                                                                                           <  4:455007/141‑1 (MQ=255)
    tatataTCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTAc                                                                                                                                          <  4:215127/141‑1 (MQ=255)
    tatataTCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTAc                                                                                                                                          <  3:321640/141‑1 (MQ=255)
     atatgtCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACg                                                                                                                                         >  2:655714/1‑141 (MQ=255)
     atatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACg                                                                                                                                         >  2:1533133/1‑141 (MQ=255)
     atatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATCAGATTTTAATCATAACCCCCGCCACAAGCCTACAAATTCGGACg                                                                                                                                         <  2:758227/141‑1 (MQ=255)
      tatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                                                                                                        <  1:100767/141‑1 (MQ=255)
      tatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                                                                                                        <  1:829414/141‑1 (MQ=255)
       atatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCt                                                                                                                                       <  3:554789/141‑1 (MQ=255)
          tCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCtttt                                                                                                                                    >  1:1316410/1‑141 (MQ=255)
                aCATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaata                                                                                                                              >  2:295422/1‑141 (MQ=255)
                aCATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaata                                                                                                                              <  1:1168809/141‑1 (MQ=255)
                  aTACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatata                                                                                                                            <  1:257775/141‑1 (MQ=255)
                   tACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataa                                                                                                                           >  1:849373/1‑141 (MQ=255)
                   tACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTAGTACGCTTTTTtaatataa                                                                                                                           >  2:1567022/1‑141 (MQ=255)
                     cAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataata                                                                                                                         >  1:1583415/1‑141 (MQ=255)
                      atggACTGTGATTCAAGGTCACTGGATGGGAGAGGGGCGTTCTGGCAGGGTCTGAAAGCTCATAATATTTTCCTGTTAGGAGATTTTAATAATAACACAGGGAAAAAGCGTACAAATGCGTACGCTTTTTGAATATAATAc                                                                                                                        <  2:1015825/138‑1 (MQ=255)
                      aaaGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                        <  1:1494401/141‑1 (MQ=255)
                      aaaGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                        <  4:246550/141‑1 (MQ=255)
                      aaaGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                        <  2:1514644/141‑1 (MQ=255)
                         gACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                                                                                                     <  1:409007/141‑1 (MQ=255)
                         gACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                                                                                                     >  1:1259741/1‑141 (MQ=255)
                         aaCTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                                                                                                     <  1:708098/140‑1 (MQ=255)
                           cTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGtt                                                                                                                   >  3:695984/1‑141 (MQ=255)
                               gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCAc                                                                                                               >  3:48481/1‑141 (MQ=255)
                                aTTCAATGTCACTCGATGTAAAAGAGACGTTCTAACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACt                                                                                                              <  2:1360494/141‑1 (MQ=255)
                                 ttCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTa                                                                                                             >  2:365460/1‑141 (MQ=255)
                                   cAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                                                           <  1:580073/141‑1 (MQ=255)
                                      tGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGaa                                                                                                        >  2:716599/1‑141 (MQ=255)
                                       gTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAAc                                                                                                       <  3:196683/141‑1 (MQ=255)
                                          aCTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGtt                                                                                                    >  1:15734/1‑141 (MQ=255)
                                           cTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                                                                   <  1:655714/141‑1 (MQ=255)
                                             cGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTa                                                                                                 >  3:362361/1‑141 (MQ=255)
                                                  tAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTAt                                                                                            >  2:914823/1‑141 (MQ=255)
                                                   aaaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                        <  3:634830/112‑1 (MQ=255)
                                                   aaaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                        >  4:634830/1‑112 (MQ=255)
                                                    aaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCt                                                                                          >  1:339127/1‑141 (MQ=255)
                                                     aaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCtt                                                                                         <  4:59856/141‑1 (MQ=255)
                                                      agagACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtc                                                                                        <  1:1419146/141‑1 (MQ=255)
                                                              tCTGACAGCGTCTAATATCTCATAATATTGTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACCTTTTAAGTATCTTCATCATTaa                                                                                <  2:196231/141‑1 (MQ=255)
                                                              tCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTac                                                                                >  2:325094/1‑140 (MQ=255)
                                                              tCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTaa                                                                                <  2:484100/141‑1 (MQ=255)
                                                               cTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGTGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAAc                                                                               >  4:194541/1‑141 (MQ=255)
                                                                 gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTg                                                                             <  2:1111138/141‑1 (MQ=255)
                                                                   cAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGaa                                                                           >  2:251215/1‑141 (MQ=255)
                                                                     gCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAAc                                                                         <  2:1432803/141‑1 (MQ=255)
                                                                      cGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACt                                                                        <  1:993614/141‑1 (MQ=255)
                                                                      cGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACt                                                                        >  1:1224350/1‑141 (MQ=255)
                                                                       gTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTa                                                                       <  2:409332/141‑1 (MQ=255)
                                                                        tCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg                                                                                               >  2:85563/1‑116 (MQ=255)
                                                                         cTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACa                                                                     <  4:173853/141‑1 (MQ=255)
                                                                          tAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCtt                                                                                         >  4:37765/1‑120 (MQ=255)
                                                                            aaaTCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGta                                                                  <  2:1459071/141‑1 (MQ=255)
                                                                             aaTCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaa                                                                 <  4:687818/141‑1 (MQ=255)
                                                                                   ataataTTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATAc                                                           >  2:1202008/1‑141 (MQ=255)
                                                                                   ataataTTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCATACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATAc                                                           >  3:616618/1‑141 (MQ=255)
                                                                                      atatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCg                                                        >  1:1472584/1‑141 (MQ=255)
                                                                                       tatTTTCCTGTTATGAGATTTTAATAAGAACACAAGCAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGt                                                       <  2:1275373/141‑1 (MQ=255)
                                                                                        atTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTg                                                                             >  4:577835/1‑118 (MQ=255)
                                                                                        atTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTc                                                      >  2:173200/1‑141 (MQ=255)
                                                                                         ttttCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTca                                                     <  1:302386/141‑1 (MQ=255)
                                                                                              cTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat                                                >  2:645029/1‑141 (MQ=255)
                                                                                              cTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat                                                <  3:414110/141‑1 (MQ=255)
                                                                                              atattATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTc                                                         >  3:162637/4‑132 (MQ=255)
                                                                                                gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                              >  1:765070/1‑141 (MQ=255)
                                                                                                gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                              >  3:396709/1‑141 (MQ=255)
                                                                                                gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                              >  1:559551/1‑141 (MQ=255)
                                                                                                gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTCTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                              <  4:513994/141‑1 (MQ=255)
                                                                                                     aaaaTTTTAATAATACCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTTAAACTACAGTGATAAAACTCGTCAACAATATTAGta                                         <  2:1325046/138‑1 (MQ=255)
                                                                                                       gaTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCTTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGtata                                       <  2:960282/141‑1 (MQ=255)
                                                                                                       gaTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGtata                                       >  4:125790/1‑141 (MQ=255)
                                                                                                       gaTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGtata                                       >  1:1532394/1‑141 (MQ=255)
                                                                                                        aTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAg                                      <  1:630744/141‑1 (MQ=255)
                                                                                                        aTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAg                                      >  1:690458/1‑141 (MQ=255)
                                                                                                        aTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTATTAAAAGAATACCTGTCTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAg                                      <  1:241790/141‑1 (MQ=255)
                                                                                                         ttttAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGt                                     >  3:130792/1‑141 (MQ=255)
                                                                                                          tttAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGtt                                    <  2:1608083/141‑1 (MQ=255)
                                                                                                             aataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTaaa                                 <  1:450794/141‑1 (MQ=255)
                                                                                                             aataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTaaa                                 >  4:410023/1‑141 (MQ=255)
                                                                                                                 ataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAg                             >  2:158733/1‑141 (MQ=255)
                                                                                                                 ataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAg                             <  1:5073/141‑1 (MQ=255)
                                                                                                                  taaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGa                            <  3:587405/141‑1 (MQ=255)
                                                                                                                  taaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGa                            >  4:326571/1‑141 (MQ=255)
                                                                                                                   aaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGaa                           >  3:91689/1‑141 (MQ=255)
                                                                                                                     cacaAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAg                         <  1:93853/141‑1 (MQ=255)
                                                                                                                         aGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACtt                     <  1:911163/141‑1 (MQ=255)
                                                                                                                          taaaaaaGCGTACGCATTTGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTa                    >  2:569882/2‑141 (MQ=255)
                                                                                                                            aaaaaGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAgg                  >  1:1635985/1‑141 (MQ=255)
                                                                                                                               aaGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGtata                                       >  2:785220/1‑117 (MQ=255)
                                                                                                                               aaGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGtata                                       <  1:785220/117‑1 (MQ=255)
                                                                                                                                 gCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTgg             >  2:1143768/1‑141 (MQ=255)
                                                                                                                                   gTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCa           <  1:1399456/141‑1 (MQ=255)
                                                                                                                                    tACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCAt          <  2:524384/141‑1 (MQ=255)
                                                                                                                                       gaaTTTGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAAc       >  2:471179/2‑141 (MQ=255)
                                                                                                                                       gaaTTTGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAAc       >  1:1069319/2‑141 (MQ=255)
                                                                                                                                        aaTTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAAcc      <  1:530866/141‑1 (MQ=255)
                                                                                                                                          ttCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAACCGa    <  1:194314/141‑1 (MQ=255)
                                                                                                                                            cGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAACCGAAc  >  1:1126479/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAACCGAAC  >  CP000731/11877‑12157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: