Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,372,413 | C→G | 6.9% | intergenic (+164/+28) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,372,413 | 0 | C | G | 6.9% | 728.2 / 40.7 | 216 | intergenic (+164/+28) | USA300TCH1516_02262/pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
Reads supporting (aligned to +/- strand): ref base C (95/106); new base G (10/5); total (105/111) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.84e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.84e-01 |
Only 100 of 218 total aligned reads displayed.
TATATAATATAGAAGAAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATAGAAAATA > USA300TCH1516_ALE/2372273‑2372552 | ataatataGAAGAAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGAtt < 3:406157/141‑1 (MQ=255) taatataGAAGAAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTg > 1:1422776/1‑141 (MQ=255) ataGAAGAAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTGCAAAGAAAAAAACGACTACCAATCATTGGCAg > 2:1048509/1‑141 (MQ=255) taGAAGAAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGt < 1:1404716/141‑1 (MQ=255) agaagaAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTc < 4:293956/141‑1 (MQ=255) gaagaaACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 2:676943/141‑1 (MQ=255) gaagaaACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 2:347357/141‑1 (MQ=255) aagaaACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGt < 1:785495/141‑1 (MQ=255) gaaACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGttt > 1:1645223/1‑141 (MQ=255) aacttCCAATAATTATAAAAGAAGTATATTTAGAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAANAAACGACTACCAATCNTTGGCAGTCGTTTTTtg < 1:1048509/137‑1 (MQ=255) cGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTtgtg > 2:1503962/1‑141 (MQ=255) gTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TATAAAGACATTCATAATATC‑GCAATATGATAATACGCTTCTTATTTTAACCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGAAGTCGTTTTTTgtgt > 4:227754/1‑141 (MQ=255) tCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTc < 2:77851/141‑1 (MQ=255) ccAACAATTTTTAAAGAAGTTTATTT‑TATACGGATATTTTAAAGAC‑TTTATAAATTCGGTTTTATTTTTTTCCGTTCTTTTTTTTTTCTTTATTTAAAAAAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTc < 1:218557/141‑1 (MQ=255) ccAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGCCAGTCGTTTTTTGTGTCt > 2:136940/1‑141 (MQ=255) caacaaTTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATA‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTg > 4:644334/1‑141 (MQ=255) acaaTTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGa < 4:549454/141‑1 (MQ=255) aaTTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGAtt > 2:224985/1‑141 (MQ=255) tAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCACTCATTGGCAGTCGTTTTTTGTGTCTGGATTTAAcc < 2:1439029/141‑1 (MQ=255) aaaaGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCa < 2:579209/141‑1 (MQ=255) aaaaGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCa > 1:1381632/1‑141 (MQ=255) aaaaGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCa < 2:1205292/141‑1 (MQ=255) aaaaGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCa > 2:1086177/1‑141 (MQ=255) aaaaGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCa > 1:573301/1‑141 (MQ=255) aagaagTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATg < 1:1547420/141‑1 (MQ=255) aagaagTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATg < 2:188213/141‑1 (MQ=255) aagTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAAc > 2:89873/1‑141 (MQ=255) aagTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAAc < 1:447690/141‑1 (MQ=255) aagTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GATTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAAc < 3:330193/141‑1 (MQ=255) atatTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAat < 4:131128/141‑1 (MQ=255) tataT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGaa > 1:158411/1‑141 (MQ=255) atat‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGatg < 1:426891/141‑3 (MQ=255) at‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa < 2:1482618/141‑1 (MQ=255) t‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTAc < 1:370710/141‑1 (MQ=255) ta‑tTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaat < 1:675146/141‑1 (MQ=255) ta‑tTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaat < 4:246236/141‑1 (MQ=255) ttAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa > 2:1227877/1‑141 (MQ=255) aaaGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATa > 4:576554/1‑141 (MQ=255) aGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGt > 2:1151467/1‑141 (MQ=255) gACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTa > 2:1329566/1‑141 (MQ=255) cATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTAcc > 2:280315/1‑141 (MQ=255) aTTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCa > 3:632253/1‑141 (MQ=255) aTTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCa > 1:1361040/1‑141 (MQ=255) tCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCAtt < 2:699233/141‑1 (MQ=255) cATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTa > 1:440941/1‑141 (MQ=255) ataataTC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTaa > 3:420115/1‑141 (MQ=255) atC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat < 1:1149164/141‑1 (MQ=255) gCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAAtacataca < 1:534662/141‑1 (MQ=255) tATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTAt < 2:437877/141‑1 (MQ=255) aTGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATc < 1:495223/141‑1 (MQ=255) tGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCg > 2:640147/1‑141 (MQ=255) tGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCg < 2:742354/141‑1 (MQ=255) tGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCg < 1:667066/141‑1 (MQ=255) gTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCgg > 3:568203/1‑141 (MQ=255) gTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCgg > 3:57730/1‑141 (MQ=255) tATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGAt < 1:1618564/141‑1 (MQ=255) tttCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGt < 1:733817/141‑1 (MQ=255) cGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAct < 1:1495020/141‑1 (MQ=255) ttcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtct > 2:1537141/1‑141 (MQ=255) tcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtctt < 1:89873/141‑1 (MQ=255) ttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTa < 2:1417200/141‑1 (MQ=255) ttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTa < 2:820850/141‑1 (MQ=255) ttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTa < 1:1258549/141‑1 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACCACCAGCATGGACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTAt > 1:1605965/1‑141 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTAt < 2:400367/141‑1 (MQ=255) aTTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATg < 1:331664/141‑1 (MQ=255) aTTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATg < 3:164019/141‑1 (MQ=255) tttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaat > 3:212462/1‑94 (MQ=255) tATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGtttt > 3:679688/1‑141 (MQ=255) aTCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGttttt < 3:644334/141‑1 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTag < 3:480237/141‑1 (MQ=255) tACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTagag > 1:1166580/1‑141 (MQ=255) tCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATaa > 1:1530562/1‑141 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAGTATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGc < 2:1422764/141‑1 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGc < 4:420115/141‑1 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGc < 2:973433/141‑1 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGc < 3:2606/141‑1 (MQ=255) aaGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGtttt > 1:1418308/1‑128 (MQ=255) aaGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCa < 1:66406/141‑1 (MQ=255) aGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCAt > 2:470282/1‑141 (MQ=255) aGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCAt < 1:284640/141‑1 (MQ=255) gAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCAtt < 1:1503962/141‑1 (MQ=255) aaaaaaaCGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTg < 1:640147/141‑1 (MQ=255) aaaaaCGCCTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTa > 1:1311894/1‑141 (MQ=255) aaaaaCGACTACCAATCATTGACAGACGTTTTTTGTGTCTAGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAACATAGTa > 4:213150/1‑141 (MQ=255) aaaaCGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTaa > 1:962700/1‑141 (MQ=255) aaaCGACTGCCAATGATTGGTAGTCGTTTTTTATGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAAt < 4:494904/141‑1 (MQ=255) aCGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTg > 3:507262/1‑141 (MQ=255) aCGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTg > 4:168065/1‑141 (MQ=255) aCGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTg < 1:461803/141‑1 (MQ=255) aCTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATCCATACATTATCGGATGTACTTCTTTACGTTTTTTAGAGATAAGCATTGTCATTggct > 2:1312095/1‑139 (MQ=255) ctgccAATGATTGGTAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATa > 1:1016216/4‑141 (MQ=255) ctgccAATGATTGGTAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATa > 1:1460280/4‑141 (MQ=255) cTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATa < 2:1179136/141‑1 (MQ=255) tgccAATGATTGGTAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTa < 2:1654927/106‑1 (MQ=255) tgccAATGATTGGTAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTa > 1:1654927/3‑108 (MQ=255) aCCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATAGa < 2:50770/141‑1 (MQ=255) cAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTTGATAGcaa > 4:409277/1‑141 (MQ=255) aTCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATAGAaaat < 1:106880/141‑1 (MQ=255) tCATTGGCAGTCGTTTTTTTTTTTTTTTTTTAATCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATAGAaaata > 4:471067/1‑141 (MQ=255) | TATATAATATAGAAGAAACACGTCCAACAATTTTAAAAGAAGTATATTTATAT‑CGGATA‑TTTAAAGACATTCATAATATC‑GCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCGTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTCTTTATGTTTTTTAGAGATAAGCATTGTAATTGGATAGAAAATA > USA300TCH1516_ALE/2372273‑2372552 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |