mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,073,140 | 0 | G | A | 42.3% | 7.3 / 23.6 | 26 | D171N (GAT→AAT) | USA300HOU_RS10455 | hypothetical protein |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 32.4% | 47.8 / 20.5 | 37 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 110,660 | 0 | T | A | 30.4% | 24.7 / 13.6 | 23 | I173I (ATT→ATA) | USA300HOU_RS00515 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 29.7% | 46.0 / 25.4 | 37 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 29 (1.040) | 4 (0.160) | 4/250 | 3.0 | 13.8% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 24 (0.960) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
| * | ? | USA300TCH1516_ALE | = 1353906 | 40 (1.430) | 3 (0.120) | 3/252 | 3.5 | 8.2% | intergenic (+99/+44) | nucH/USA300HOU_RS06735 | Thermonuclease/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1353932 | 31 (1.230) | intergenic (+125/+18) | nucH/USA300HOU_RS06735 | Thermonuclease/hypothetical protein | |||||