breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,073,1400GA42.3% 7.3 / 23.6 26D171N (GAT→AAT) USA300HOU_RS10455hypothetical protein
*USA300TCH1516_ALE111,5160CA32.4% 47.8 / 20.5 37Q196K (CAA→AAA) USA300HOU_RS00520putative lipoprotein
*USA300TCH1516_ALE110,6600TA30.4% 24.7 / 13.6 23I173I (ATT→ATAUSA300HOU_RS00515putative lipoprotein
*USA300TCH1516_ALE111,5120AG29.7% 46.0 / 25.4 37S194S (TCA→TCGUSA300HOU_RS00520putative lipoprotein

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2085296 =29 (1.040)4 (0.160) 4/250 3.0 13.8% coding (173/201 nt) hlb_1 Phospholipase C
?USA300TCH1516_ALE = 2128343 24 (0.960)coding (1/825 nt) hlb_2 Phospholipase C
* ? USA300TCH1516_ALE = 135390640 (1.430)3 (0.120) 3/252 3.5 8.2% intergenic (+99/+44) nucH/USA300HOU_RS06735 Thermonuclease/hypothetical protein
?USA300TCH1516_ALE = 1353932 31 (1.230)intergenic (+125/+18) nucH/USA300HOU_RS06735 Thermonuclease/hypothetical protein