Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000731 25,663 Δ1 bp 100% coding (316/333 nt) USA300HOU_pUSA300HOUMR0031 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073125,6630A.94.8% 1315.0 / 44.6 305coding (316/333 nt)USA300HOU_pUSA300HOUMR0031hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (7/9);  new base . (145/144);  total (152/153)
Fisher's exact test for biased strand distribution p-value = 7.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

Only 100 of 334 total aligned reads displayed.

GTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATA  >  CP000731/25530‑25790
                                                                                                                                     |                                                                                                                               
 ttATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaa                                                                                                                                >  1:2440839/1‑134 (MQ=255)
   aTTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaa                                                                                                                              <  1:2249202/134‑1 (MQ=255)
   aTTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaa                                                                                                                              >  2:1641987/1‑134 (MQ=255)
   aTTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaa                                                                                                                              <  2:726072/134‑1 (MQ=255)
    tttACACTAGTGATTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaaa                                                                                                                             <  1:2673519/134‑1 (MQ=255)
     ttACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaaaa                                                                                                                            >  1:2300563/1‑134 (MQ=255)
      tACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGATTTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaaaat                                                                                                                           >  2:874998/1‑133 (MQ=255)
        cacTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaaaatat                                                                                                                         >  1:2024332/1‑131 (MQ=255)
         acTAGTGCTTAAATTTACAGGTTTGTCATCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaaaatata                                                                                                                        <  2:1878081/134‑5 (MQ=255)
         acTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaaaatata                                                                                                                        >  1:1378716/1‑130 (MQ=255)
          cTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATAc                                                                                                                      <  1:988572/134‑1 (MQ=255)
          cTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATAc                                                                                                                      >  2:934121/1‑134 (MQ=255)
            aGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACAt                                                                                                                    >  2:1460746/1‑134 (MQ=255)
             gTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATc                                                                                                                   >  1:2645918/1‑134 (MQ=255)
             gTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATc                                                                                                                   <  1:1265325/134‑1 (MQ=255)
               gCTTAAATTTACAGGTTTGTCACAAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTa                                                                                                                 <  1:40151/134‑1 (MQ=255)
                  tAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATACACATCTAAAg                                                                                                              >  2:1951825/1‑134 (MQ=255)
                  tAAATTTACAGGTTTGTCACAAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAg                                                                                                              <  1:1137200/134‑1 (MQ=255)
                   aaaTTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAgg                                                                                                             <  1:1510762/134‑1 (MQ=255)
                    aaTTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGt                                                                                                            <  2:237776/134‑1 (MQ=255)
                      tttACATGTTAATCACCAAGTACCGAAGGAACTTGGTTTTCTCAATATCCAGAAATTTTCTTTATCATTGTAGCACTATTCCCCATCCAGTTTAACTCCTACAATACAAAAACCAAATAAACATCTACAggcca                                                                                                          >  2:1331938/1‑131 (MQ=255)
                      tttACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTa                                                                                                          >  1:1847541/1‑134 (MQ=255)
                       ttACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGAATTATCTCGTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTaa                                                                                                         >  2:1739182/1‑134 (MQ=255)
                         aCAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTACCACATCATAGCAAGATCTCTTATGCGGTGATATTACTATACTACAAATAAAAAATATACATCTAAAGATTAAAt                                                                                                       >  2:2792493/1‑134 (MQ=255)
                          cAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACAAAATCTTAAGGTGGTGAAGGACTATACTACAAATAAAAAATATACATCTAAAGGTTAAAtt                                                                                                      >  1:106545/1‑134 (MQ=255)
                             gTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTATAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAAt                                                                                                   >  1:1961205/1‑134 (MQ=255)
                              tttGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTGTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATg                                                                                                  <  1:1817038/134‑1 (MQ=255)
                               ttGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGa                                                                                                 >  2:699439/1‑134 (MQ=255)
                                 gTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATATTAAAAATAAAAAATATACATCTAAAGGTTAAATTAATGaaa                                                                                               >  1:1168673/1‑134 (MQ=255)
                                 gTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGaaa                                                                                               >  2:1509841/1‑134 (MQ=255)
                                    aacAAATATTTAAATATCTTGATTTTCTCAATATCCAGAAATTTTCTTTATAATTAAAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAAt                                                                                            <  1:135991/132‑1 (MQ=255)
                                    aCCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTACTGAAAAAt                                                                                            >  2:2271368/1‑134 (MQ=255)
                                    aCCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAAt                                                                                            <  1:1575660/134‑1 (MQ=255)
                                       aaGTATTTAAGGATTCTGATTTCCTAAATAACCAGAAATTTTCTTTATAATTGTACCACTATTTCTTATGCTGTTTAATTATTATACTACAAATAAAAAATATACATCTAAAGGTTATATTAATGAAAAATaca                                                                                         <  2:635990/134‑3 (MQ=255)
                                       aaGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATAAAAAATAGa                                                                                         >  2:2244854/1‑134 (MQ=255)
                                         gTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAAt                                                                                       <  2:1841137/134‑1 (MQ=255)
                                           aTTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTACATTAATGAAAAATAGAATTa                                                                                     >  2:1107130/1‑134 (MQ=255)
                                              gAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTACTTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATTAAAAATAGAATTagaa                                                                                  >  2:397820/1‑133 (MQ=255)
                                                  gATCTTGGTTTTCTCAATATCCCGAAATTTTCTTTCTACTTGTTGCACTATTTCTTATGCTGTATAAAAAAAAAAATAAAAAAAAAAAATATACATCTAAAGATAAAATTAATGAAAAATAGAATTAGAGAata                                                                              >  1:273354/1‑134 (MQ=255)
                                                  gATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAata                                                                              >  1:692003/1‑134 (MQ=255)
                                                     cTTGGTTTTCTCAAAATCCAGAAAATTTCTTTATAATTGTAACACTATTACTTATACTGTATAAATACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATCTAg                                                                           <  1:1000889/134‑1 (MQ=255)
                                                      ttGGTTTTCTCAATATCCAGAAATTTTATTTATAATTGTAGCACTAATTATTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGa                                                                          <  1:911733/134‑1 (MQ=255)
                                                       tGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGaa                                                                         <  1:624276/134‑1 (MQ=255)
                                                        ggTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGaaa                                                                        >  1:1633289/1‑134 (MQ=255)
                                                          ttttCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAAc                                                                      >  1:1770048/1‑134 (MQ=255)
                                                              ctcAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACaaaa                                                                  >  1:2522610/1‑134 (MQ=255)
                                                               tcAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACaaaaa                                                                 >  2:2180161/1‑134 (MQ=255)
                                                                      ccAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAAGAAttt                                                          >  2:2261797/1‑134 (MQ=255)
                                                                       cAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAGTATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtc                                                         <  1:1097328/134‑1 (MQ=255)
                                                                        aGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtct                                                        >  2:2580671/1‑134 (MQ=255)
                                                                        aGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtct                                                        >  1:839835/1‑134 (MQ=255)
                                                                        aGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtct                                                        >  2:445258/1‑134 (MQ=255)
                                                                        aGAAATTTTATTTATAATTGTAGCAATATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtct                                                        <  2:854770/134‑1 (MQ=255)
                                                                         gAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtctc                                                       <  2:2440839/134‑1 (MQ=255)
                                                                          aaaTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCa                                                      <  1:2811246/134‑1 (MQ=255)
                                                                          aaaTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCa                                                      >  1:2207543/1‑134 (MQ=255)
                                                                          aaaTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCGAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCa                                                      >  2:2531955/1‑134 (MQ=255)
                                                                          aaaTTTTCTTTATAATTGTAGCAATATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCa                                                      <  1:1476085/134‑1 (MQ=255)
                                                                            aTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAg                                                    >  2:1307120/1‑134 (MQ=255)
                                                                            aTTTTCTTTATAATTGTAGCACTATTTCTTATGCTATTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAg                                                    <  1:2369154/134‑1 (MQ=255)
                                                                            aTTTTCTTTATAATTGTAGCACTATTTCTTATGCCGCCTCTCTACGAGTGTAGAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAg                                                    <  2:603707/134‑1 (MQ=255)
                                                                             ttttCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGCATTAGAGAATATAGAAAACAAACAGGAATTTCTCAAGa                                                   <  2:2209830/134‑1 (MQ=255)
                                                                             ttttCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGa                                                   <  1:1429342/134‑1 (MQ=255)
                                                                             ttttCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATATAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTATCAAGa                                                   >  2:955627/1‑134 (MQ=255)
                                                                             ttttCTTTATAATTGTAGCAATATTTCTTATGCTATTTAATAACTAAACTAAAAAAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGa                                                   <  1:1318823/134‑1 (MQ=255)
                                                                                tCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAAc                                                >  2:1261516/1‑134 (MQ=255)
                                                                                  tttATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACtt                                              >  2:2312780/1‑134 (MQ=255)
                                                                                  ttaataAATGTAGTACTATTTCTTATGATATTTAAGTACGATAATACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACtt                                              <  2:1818644/131‑1 (MQ=255)
                                                                                    tataATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTa                                            <  1:2181178/134‑1 (MQ=255)
                                                                                    tataATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTa                                            <  1:559354/134‑1 (MQ=255)
                                                                                       aaTTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGt                                         >  2:2870592/1‑134 (MQ=255)
                                                                                         ttGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACCTCTCAAGGTTACATTAATGAAAAATAGAATTAGAGAATATAGAAAATCAAGACGAATTGCTCAAGAAACTTTAAGTaa                                       <  2:1435146/134‑1 (MQ=255)
                                                                                            tAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGa                                    <  1:2118364/134‑1 (MQ=255)
                                                                                            tAGCAATTTTTCTTCTGCTGAATAATTACTATACTACAAATAAAAAATATACATCTAAATGTTAAATTAATGAAAAATATAATTAGAGAATATAGAATACAAAAAGGTATTTCTCAAGAAACTTTAAGTAAAGa                                    <  2:1154793/134‑1 (MQ=255)
                                                                                              gCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTAAAGTAAAGAAt                                  >  2:1986370/1‑134 (MQ=255)
                                                                                               cACTATTTTTTATGCTGTTTAATTACTATAATAAAAATAAAAAATATACATATAAAGGTTAAAATAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAAtt                                 <  1:589925/134‑1 (MQ=255)
                                                                                               cACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAAtt                                 <  2:833391/134‑1 (MQ=255)
                                                                                               cACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAAtt                                 <  1:445258/134‑1 (MQ=255)
                                                                                                 cTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTaa                               <  1:722446/134‑1 (MQ=255)
                                                                                                 cTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTACAGAATATAAAAAACAAAAAAGAATTTCTCAAGAAACTTTAACTAAAGAATTaa                               >  2:2701534/1‑134 (MQ=255)
                                                                                                    tttCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAGTTTATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAg                            >  1:1686233/1‑134 (MQ=255)
                                                                                                    tttCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAg                            >  2:2569740/1‑134 (MQ=255)
                                                                                                       cTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAgtgt                         >  1:348457/1‑134 (MQ=255)
                                                                                                        ttATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTc                        <  2:2507311/134‑1 (MQ=255)
                                                                                                         tATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCt                       >  2:1199372/1‑134 (MQ=255)
                                                                                                           tGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAg                     <  2:106545/134‑1 (MQ=255)
                                                                                                           tGCTGTTTAATTACTATACTAAAAATAAAAAATATACATACAAAGGTTCACTTAATGACGCTCAGCATTCGGGAATCTAGAAAACAAAAAGGAATTTACACAGAAAGCTGGTTTTAAGAATTAAAAGTGTCTAg                     <  2:53536/134‑1 (MQ=255)
                                                                                                           agCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAATGAATTTCTCAAGAATCTTTAAGTACAGAATTAAAAGTGTCTAg                     <  1:199218/133‑1 (MQ=255)
                                                                                                             ctttttAACTACTATACTACAAATAAAAAATATACATCTAAATGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGc                   <  1:772319/131‑1 (MQ=255)
                                                                                                             cTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGAAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGc                   >  2:1584897/1‑134 (MQ=255)
                                                                                                             atGTTTAATTAATATAAGACAAAAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATATAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGc                   <  2:2086815/133‑1 (MQ=255)
                                                                                                                 ttAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAAc               <  2:1370685/134‑1 (MQ=255)
                                                                                                                 atAATTATTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAAc               <  2:234182/133‑1 (MQ=255)
                                                                                                                  tAATTACTATACTACAAATAAAAAAAACAAAACTGAAGGTTAATCTAATTAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACt              <  2:2159010/134‑1 (MQ=255)
                                                                                                                    attattATACTACAAATAAAAAATATATATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTAt            <  1:2566410/134‑1 (MQ=255)
                                                                                                                    aTTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTAt            <  2:2024332/134‑1 (MQ=255)
                                                                                                                          atactaTAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGc      <  1:2267067/134‑1 (MQ=255)
                                                                                                                          ataataAAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGc      <  1:297714/134‑1 (MQ=255)
                                                                                                                           tactaaAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAACAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAATAGTGTCTAGGCAAACTATTAATGCa     <  2:2115616/134‑1 (MQ=255)
                                                                                                                            actacAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCaa    >  2:139282/1‑134 (MQ=255)
                                                                                                                                     |                                                                                                                               
GTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATA  >  CP000731/25530‑25790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: