Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 613,998 | G→A | 5.8% | S770S (TCG→TCA) | sdrC → | Serine‑aspartate repeat‑containing protein C |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 613,998 | 0 | G | A | 5.8% | 887.4 / 3.8 | 392 | S770S (TCG→TCA) | sdrC | Serine‑aspartate repeat‑containing protein C |
Reads supporting (aligned to +/- strand): ref base G (165/172); new base A (40/4); total (208/184) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.09e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 |
Only 100 of 397 total aligned reads displayed.
GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCT > USA300TCH1516_ALE/613865‑614130 | gCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCg > 1:2726018/1‑134 (MQ=255) ggATTCAGACGGAGATAGAGGCTCATGTTCAGATAGTGACTCAGAT‑GCAGACAGCGA‑TTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCgg < 2:1238900/133‑1 (MQ=18) gATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGa < 1:884516/134‑1 (MQ=255) ttCAGACTCAGATAGCGACTCAGATTCAGGTA‑CAATACAAATGGCTGACAGCGA‑GTCCGACTGAGACTGCGACTCAGATAACGATTCAGATTGAAACAGCGACTAACACTCAAAGAGCCATGCTGACTCGGaag > 2:1312935/1‑132 (MQ=255) ttCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAACGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATa > 1:1314521/1‑134 (MQ=255) taGACTCAGAGAGCGACTCAGAGTCAGATAGCGACTCAGAT‑GCAGACCGCGA‑TTCGGACAGCCATCCACCCTCAGATATCGATTCAGATTCTGACAGCGACTCAGACTCAGACATCGATTCAGACTCGGATAGc < 2:38329/133‑1 (MQ=18) cAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACATTGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGc < 1:1040069/134‑1 (MQ=255) cAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACACAGACTCCGACTCAGCTAGCATTTCCGCTTCGGACACAGACTCAGCCTCAGACACAGCTCCAGACTGAGATAga > 2:1172437/1‑133 (MQ=9) cAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAAAGACACAGACTCAGATAGAGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGc > 1:914842/1‑134 (MQ=18) aGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCg > 1:2038554/1‑134 (MQ=255) gtttcagataggtactcaggtttagatagagacgcaggt‑TCAGAAAGCGA‑TATAGACAGCGATTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGAGTCAGACTGCGATTCAGAATCGGGTAGCga < 2:1111343/131‑1 (MQ=17) gACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCga > 1:489687/1‑134 (MQ=255) aCTCAGATAGCGACTCAAATTCACATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCgac < 1:1123567/134‑1 (MQ=255) tcagatagcgactcagattcagatagcgactcagat‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCgactc > 1:2002274/1‑134 (MQ=255) cagatagcgactcagattcagatagcgactcagat‑tCAGACAGCGATTTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCgactc > 1:2605137/1‑134 (MQ=255) atagcgactcagattcagatagcgactcagat‑tcagACAGCTA‑TTCAGACAGCGACTCAGACTCAGATAGCGATACAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCgactcagac < 1:1837396/134‑1 (MQ=255) tagcgactcagattcagatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGAGACTCAGAATAAGACAGTGATTCAGAGCCCGATAGAgacccagaga > 2:2269954/1‑132 (MQ=18) agcgactcagattcagatagcgcctcagat‑tcagaTAGCGA‑TTTAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCgactcagactc < 1:2317614/134‑1 (MQ=255) agcgactcagattcagatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACCGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCgactcagactc > 1:470959/1‑134 (MQ=255) agcgactcagattcagatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACACCGATTCCGACTCAGATCGCcactcagcctc > 2:523780/1‑134 (MQ=18) gacgcagaatcagatagcgacgcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGActcagactcaga < 2:2453914/134‑1 (MQ=255) ctcagattcagatagcgactcagat‑tcagaCAGCGA‑TTCAGACACCGACTCAGACTCAGATGGCGATTCAGATTCAGACAGCGATTCAGACGCAGACACCGACTCAGACTCCGATACAGAATCAGACTCCGAtc > 2:605982/1‑133 (MQ=18) cagatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCa < 1:1533534/134‑1 (MQ=255) gatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACGCAGACTCAGACAGCGAcaccgc > 2:2087739/1‑129 (MQ=18) gatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGAGATACAGCTTCAGACAGCGACTGAGACTCAGACAGAGATTAAGACTCGGGTAGCGACTGAGGCTCAGAGAGAGAATCAGa > 2:1061625/1‑134 (MQ=18) gatagcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAACGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGa > 1:522709/1‑134 (MQ=255) cttgcgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCTGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGAt < 2:1384507/131‑1 (MQ=255) cgactcagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGACAGCGACTCAGACTAAGCTTAGGACACAGATTCgt > 2:1687307/1‑133 (MQ=18) cagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGc < 1:1875230/134‑1 (MQ=255) cagat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGc > 2:883895/1‑134 (MQ=255) agat‑tcagaCAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCg > 1:420916/1‑134 (MQ=255) gat‑tgagacagcga‑gtgagacagcGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCga < 2:1212718/134‑1 (MQ=255) gat‑tcagacagcga‑ttcagacagcGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCga < 1:135976/134‑1 (MQ=255) cagacagcga‑ttcagacagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCgactca > 1:2653704/1‑134 (MQ=255) gacaacga‑ttcagacagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCgactcaga < 2:2576548/134‑1 (MQ=255) gacaacga‑tgcaaacagagaCTCAGACTAAGATAGCGATTCAGATTAAGACATCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCgactcaga < 2:968576/134‑1 (MQ=17) tcagacagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAg > 1:2745576/1‑134 (MQ=255) ttgacagggaCTAAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGc < 2:2524379/132‑1 (MQ=255) cagacagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCGGATAGCGTCTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGc < 1:181682/134‑1 (MQ=255) acagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCgat < 1:1270216/134‑1 (MQ=255) agtgactgagactcaTATAGCGATTCAGATTCAGACAGTGACTCAGACTCATACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCgattc < 2:363951/131‑1 (MQ=17) agcgaCTCAGACTCAGATATCGAGTCAGATTCAGACAGCGACTCAGACTTAGACAGCGATTCAGACTCGGATAGCGATTCAGACTCAGATAGCGACGCAGATGCGGATAGCGACTCAGACTC‑AGATAGCgattc < 1:750055/134‑1 (MQ=17) gcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAGTCAGATTCAGAAAGCGACTCAGACTC‑AGACAGCgcatca > 2:1943884/1‑129 (MQ=14) actcagactcagATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGAGTCGGATAGCGACTCAGACTC‑AGATAGCgatacagaa > 2:437261/1‑133 (MQ=255) tcagactcagaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGAGAATCAGACTC‑AGATAGCgattcagattc > 1:392355/1‑134 (MQ=255) gactcagaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGATTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGAttcagattcaga > 1:1456614/1‑134 (MQ=255) gactcagaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGAttcagattcaga > 1:288980/1‑134 (MQ=255) gactcagaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGACAGCGCctaagactcaga > 2:2653524/1‑134 (MQ=14) tcagaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAg > 1:819876/1‑134 (MQ=255) agaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCg < 1:988223/134‑1 (MQ=255) agaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCCG‑CTCGAAATAGCGATtcggattcagattgtg > 2:1969071/1‑130 (MQ=14) gaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGa > 1:2442770/1‑134 (MQ=255) aGCGATTCAGATTCAGACAGCGTCTCATATTCAGATAGTGATTCAGACTCCGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTc < 1:2553339/134‑1 (MQ=14) gCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGAGACTAAGACTC‑AGATATCTAATAAGAATCACATAGCGaaaca > 2:922535/1‑130 (MQ=14) gCGATGCAGATTCAGACAGCGACCCAAACCCATCCAGCGCCTAATTTTGGGATGGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCg < 2:1725900/134‑1 (MQ=14) cGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCgg > 1:2531385/1‑134 (MQ=255) cGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCgg < 1:1752539/134‑1 (MQ=255) gattcagattcaGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGAGTCGAAGCC‑AAATAGCGATTCAGATTCAGATAGCGATTCggc > 1:1958004/1‑133 (MQ=17) attgagattcagATAGTGACTATGAGTCAGACTGCGATTCTGACTCGGATAGCGATTCAGACTCAGGTTGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGAc < 2:801332/134‑1 (MQ=17) ttcagattcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACt > 1:277451/1‑134 (MQ=255) ttcagattcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACt > 2:643242/1‑134 (MQ=255) tcagattcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTc < 1:1660489/134‑1 (MQ=255) tcagattcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACCCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTc > 1:1495215/1‑134 (MQ=255) gattcagaCAGGTACGAAGACTCAGACAGAGATTCAGACTCTGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGa < 2:2198214/134‑1 (MQ=14) gattcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTC‑AGATAGCGAATCAGAGTCAGATAACCATTCGGACACAGa > 2:478680/1‑134 (MQ=14) gattcagaAAGCGACGCGGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGa < 2:1835834/134‑1 (MQ=255) attcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGACTCGGACTCAGAc > 1:1608438/1‑134 (MQ=255) attcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGAc > 1:2480099/1‑134 (MQ=255) attcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACACAGACTC‑AGATATCGACTCAGATTCAGCGTGTGATTAAGACTCAGAc > 2:2144094/1‑134 (MQ=11) ttcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTC‑AGATACCGATTCAGATTCAGATAACGAATCGGACTCCGAcg > 2:302202/1‑133 (MQ=14) tcagaCAGCGACTCAGACTCAGACAGCGCTTCAGCCTCGGATAGCGACTCAGACTCAGATAGCGACTTGGTTTGGGGTGACTAATCAAAGTC‑AAAAAGAGATTCAGATTCAGATCGCGATTCGGACTAAGACAg > 1:668231/1‑134 (MQ=9) gcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGATTCAGACTCAGATAGCGATTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAg < 1:2236503/133‑1 (MQ=255) cagaCAGCGAGTCAGACGCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGt < 2:1993341/134‑1 (MQ=255) agaCAGCGACTCCGCCTCAGACAGCGATTCAGACTCGGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTg < 2:687773/134‑1 (MQ=255) aCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgat > 1:2195178/1‑134 (MQ=255) aGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattc < 1:2394426/134‑1 (MQ=255) gCGACTTAGACTCAGACAGCGATTCAGTCTCGGATAGCGTCTCAGACTCAGATAGCGACTCAGATTCGGATAGCGATTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattca < 1:2277423/134‑1 (MQ=255) gCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattca > 1:1710868/1‑134 (MQ=255) gCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTC‑AGATAGCGAATCAGAATCAGATAGCGATTCGGACTCAGACAGTgaatca > 2:1519334/1‑134 (MQ=255) tactcagactcagACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACACAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcaga < 2:2702954/133‑1 (MQ=255) ctcagactcagaCAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcagatt > 1:209105/1‑134 (MQ=255) ctcagactcagaCAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGCgattcagatt > 2:2415407/1‑134 (MQ=255) ctcagactcagaCAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGAgactcagctt > 2:2815105/1‑134 (MQ=14) tcagactcagacAGTGATTCAGACTCGGATAGTGACTGAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcagattc < 2:175854/134‑1 (MQ=255) tcagactcagacAGCGATTCAGACTCGGATATCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATACAGACCCAGATATCTATTCGGACTCAGACAGTgatccagattc < 1:1981517/134‑1 (MQ=17) tcagactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcagattc < 1:2124765/134‑1 (MQ=255) tcagactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcagattc < 1:1172437/134‑1 (MQ=255) tcagactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGAGAGCGATTCAGCGTCAGATAGCGAATCGGACTCAGACAGAgaatcagattc > 2:2249440/1‑134 (MQ=17) gacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCCGACTC‑AGATAGCGATTCAGAATCAGATAACGAATCAAACTCAGACAGAGATACAGATTCAGACACAGa > 1:1008681/1‑134 (MQ=17) gacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGa < 1:1641766/134‑1 (MQ=255) cAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATa > 1:2686655/1‑134 (MQ=255) tcGATTCAGACTCGGATAGCGACTCAGTCTCATATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGc < 1:1217533/133‑1 (MQ=255) gCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGc > 1:1801002/1‑134 (MQ=255) gATTCAGACTCGGATAGCGTCTCAGACTCAGATAGTGACTTAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGa < 2:1560646/134‑1 (MQ=255) gttCAGACTCGGATAGCGATTCAGTCTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGAc < 2:1647100/133‑1 (MQ=255) tCAGACTCGGATTCCGACTCAGACTCAGATAGCAACTCAGATTCAGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTc < 1:258990/134‑1 (MQ=255) cAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTACGCGTCAGATAGCGACTCa > 1:1074710/1‑134 (MQ=255) aGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGTATAGTGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAg < 1:609663/134‑1 (MQ=255) cTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGAtt < 1:726192/134‑1 (MQ=255) cGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCt < 2:2372380/134‑1 (MQ=255) | GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAT‑TCAGACAGCGA‑TTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTC‑AGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCT > USA300TCH1516_ALE/613865‑614130 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |