Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,416,458 A→T 100% I216N (ATT→AAT)  oppD_4 ← Oligopeptide transport ATP‑binding protein OppD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,416,4580AT100.0% 556.9 / ‑6.5 178I216N (ATT→AAT) oppD_4Oligopeptide transport ATP‑binding protein OppD
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base T (78/99);  total (78/100)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 178 total aligned reads displayed.

TCAATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAAATGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAC  >  USA300TCH1516_ALE/1416328‑1416588
                                                                                                                                   |                                                                                                                                  
 cAATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTa                                                                                                                                >  2:1230909/1‑134 (MQ=255)
  aaTCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTCATATTACCTCGTTCAATGATTTTACCTTCTTTTAAAACATAATTGTAc                                                                                                                               >  2:2670748/1‑134 (MQ=255)
       tAGTAATCCCTCTTTAATTGTTTTCTATATGTAATTAGACGTTCATTATACGGATGTAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACa                                                                                                                          <  1:692265/134‑1 (MQ=255)
       gaGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACa                                                                                                                          <  2:554015/133‑1 (MQ=255)
         gTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTCACAat                                                                                                                        >  2:2266940/1‑134 (MQ=255)
         gTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATACTCATACTTTAAATAATAAATATTACCTCGTTCAATGATTTGACATTCTTTTAAAACATAATTATACTGACAat                                                                                                                        >  1:1654960/1‑134 (MQ=255)
           aaTCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTATACTTAAAattt                                                                                                                      >  2:1590169/1‑132 (MQ=255)
             tCCCTCTTTAGTTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATAttt                                                                                                                    <  2:1957754/134‑1 (MQ=255)
              cccTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTTATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTc                                                                                                                   <  1:2182709/134‑1 (MQ=255)
                ctctTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATTCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTTACAATATTTCaa                                                                                                                 <  2:1094981/134‑1 (MQ=255)
                   tttAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGAAAATATTTCAATAc                                                                                                              >  1:2357450/1‑134 (MQ=255)
                   ttgaaTTGTGTTCTATATTTAAGTAGACGTTCATTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTATCTCGTTCAATGATTTGACCTTCTTGTAAAACATAATTGTACTGACAATATTTCAATAc                                                                                                              <  2:641128/131‑1 (MQ=255)
                   tgtgaTTGAGTTCTATATTTGAATAGACGGGGATTATACGGATGCAAATGCGCATACGTGAAATGATTAATATTACATCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATAc                                                                                                              <  2:590108/130‑1 (MQ=255)
                     tAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACAt                                                                                                            >  2:2121774/1‑134 (MQ=255)
                     tAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGATCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCATCACAt                                                                                                            >  2:1203359/1‑134 (MQ=255)
                      aaTTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTTATACTTGAAATGATTAATATTACCTAGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATg                                                                                                           <  1:488524/134‑1 (MQ=255)
                        ttGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGTCTTTGCTTGATCTAAAAATGATTAATATTACCGCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGAc                                                                                                         <  1:544312/134‑1 (MQ=255)
                        ttGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGCTTTGACCATCAACTAAAAAATAATTGTACTAACAATATTTCAATACATGAc                                                                                                         >  1:1232925/1‑134 (MQ=255)
                        ttGTGTTCTATATTTAATTAGACGTTCAGTATACAGATGACCATGCTCATTATTGCCATGCCTTACATTCTTTTATTCAATGATTTGACCTTCTTTTCCAACAAAGAATATCTCACAATATTTCAATACATGAc                                                                                                         <  2:52552/134‑1 (MQ=255)
                         tgtgTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACATTCTTTTAAAACATAATTGTACTAACAATATTTCAATACATGACt                                                                                                        >  1:2281113/1‑134 (MQ=255)
                         tgtgTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTAACAATCAATTAAAACATAATTGTACTGACAATATTTCAATACATGACt                                                                                                        >  1:621650/1‑134 (MQ=255)
                          gtgtTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACtt                                                                                                       >  2:2733374/1‑134 (MQ=255)
                          gtgtTCTATATTTAATTAGAAGTTCAGTATCAGGATGAAAATGCTTATATTTGATTTGTTTTATATTAAATAGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACtt                                                                                                       >  1:1437149/1‑134 (MQ=255)
                             ttCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAg                                                                                                    <  2:1620826/134‑1 (MQ=255)
                               cTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCTATACATGACTTAAGtt                                                                                                  <  2:1179925/134‑1 (MQ=255)
                               cTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGtt                                                                                                  <  2:1817079/134‑1 (MQ=255)
                               cTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGtt                                                                                                  <  2:951995/134‑1 (MQ=255)
                               cTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGtt                                                                                                  >  2:791234/1‑134 (MQ=255)
                                 atatTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATCCTTCGCATGATTAATATTTTTTTGTTCAATAATTTAACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAt                                                                                                <  1:797708/134‑1 (MQ=255)
                                   atTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgt                                                                                              <  2:2823956/134‑1 (MQ=255)
                                    tgtAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgtg                                                                                             <  2:427391/132‑1 (MQ=255)
                                     ttAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgtgt                                                                                            <  2:2692551/134‑1 (MQ=255)
                                     ttAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgtgt                                                                                            <  1:1663142/134‑1 (MQ=255)
                                     ttAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTAGTACAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgtgt                                                                                            <  2:2326915/134‑1 (MQ=255)
                                     ttAAATAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgtgt                                                                                            <  1:424277/134‑1 (MQ=255)
                                      tAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTAtgtgtg                                                                                           >  1:1322276/1‑134 (MQ=255)
                                         ttAGACGTTCAGTATACGTATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTTAATGATTTGATCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGata                                                                                        <  1:1011957/134‑1 (MQ=255)
                                         ttAGACGTTCAGTATACGGATTCAAATGCTTATTCTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGata                                                                                        <  1:1877594/134‑1 (MQ=255)
                                         ttAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGata                                                                                        <  2:2218630/134‑1 (MQ=255)
                                            gACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTTACTTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGataata                                                                                     <  1:145158/134‑1 (MQ=255)
                                            gACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGataata                                                                                     <  1:1795950/134‑1 (MQ=255)
                                            gACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGataata                                                                                     >  2:810916/1‑134 (MQ=255)
                                               gTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATaataaat                                                                                  <  1:2681571/134‑1 (MQ=255)
                                               gTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTATTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATaataaat                                                                                  <  1:505438/134‑1 (MQ=255)
                                                     tataCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCATAGATTTAACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTTATAATAAATAATGtt                                                                            >  2:486432/1‑134 (MQ=255)
                                                     tataCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGtt                                                                            >  1:2675790/1‑134 (MQ=255)
                                                     tataCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTCAGGCGAGATAATAAATAATGtt                                                                            >  2:1148273/1‑134 (MQ=255)
                                                       taCGGATGCAAATGCTCATACTTAAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTg                                                                          <  2:758218/134‑1 (MQ=255)
                                                        aCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGa                                                                         <  2:288759/134‑1 (MQ=255)
                                                         cGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGAc                                                                        >  1:2336096/1‑134 (MQ=255)
                                                         cGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACATAAGTTATGTGTGATAATAAATAATGTTTGAc                                                                        >  2:1020082/1‑134 (MQ=255)
                                                         cGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATCTGACCTTCTTTTAAAACATAATTGTAATGACAATATTTCAATACATGACTTAAGATATCTGTAATAATAGATAATATTTAAc                                                                        >  2:703168/1‑134 (MQ=255)
                                                         cGGATGCAAATGCTCATACATGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATTTTTGAc                                                                        >  2:1103123/1‑134 (MQ=255)
                                                          ggATGTAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTACAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGAcc                                                                       <  2:299991/134‑1 (MQ=255)
                                                           gATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCa                                                                      <  2:1564127/134‑1 (MQ=255)
                                                             tGCAAATGCTCATACTTTAAATGATTATTTTTTCCGCTAGCAATGATTTGACTTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATg                                                                    <  1:1220777/134‑1 (MQ=255)
                                                             tGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATg                                                                    <  1:2051216/134‑1 (MQ=255)
                                                              gCAAATGAACATACATGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCCTGt                                                                   >  2:2517194/1‑134 (MQ=255)
                                                               cAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGtt                                                                  <  2:506840/134‑1 (MQ=255)
                                                               cAAATGCTCATAATTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGtt                                                                  <  2:1325422/134‑1 (MQ=255)
                                                                    gcccATACTGTAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGATAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAAt                                                             <  1:716276/131‑1 (MQ=255)
                                                                    gCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAAt                                                             <  1:835386/134‑1 (MQ=255)
                                                                      tcattattGAAATGATTAATATTACCTCGTTCAGTGATTTGACCTTCTTTTAAACCATATTTGACCAGACAATATTTCAATACATGACTTAAGTTATGTGTCTTTATAAATAATGTTTGACCATGTTCTAATAc                                                           <  2:1183216/128‑1 (MQ=255)
                                                                      tCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATAc                                                           <  2:2055351/134‑1 (MQ=255)
                                                                        aTACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACaa                                                         <  2:2562176/134‑1 (MQ=255)
                                                                         tACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAat                                                        <  1:2071560/134‑1 (MQ=255)
                                                                          aCTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAata                                                       <  1:497011/134‑1 (MQ=255)
                                                                             tGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGc                                                    <  1:2187387/134‑1 (MQ=255)
                                                                               aaaTGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTATAATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTg                                                  >  1:318091/1‑134 (MQ=255)
                                                                                aaTGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATAAATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGt                                                 >  1:1512525/1‑134 (MQ=255)
                                                                                         tatTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGATATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATcc                                        >  1:2307613/1‑134 (MQ=255)
                                                                                           ttACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATATTCTAATACAATATGCTTTAATAAATCCAt                                      >  2:34928/1‑134 (MQ=255)
                                                                                            tACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATATTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATc                                     >  1:2533991/1‑134 (MQ=255)
                                                                                             aCCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCa                                    >  1:1025/1‑134 (MQ=255)
                                                                                             aCCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATACGCTATAGTAATTGCATCa                                    >  1:381301/1‑134 (MQ=255)
                                                                                             aCCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATAATTCAATACATGCCTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCa                                    >  1:1495484/1‑134 (MQ=255)
                                                                                              ccTCGTTCAATGATTTGACTTTCTTTTAAATCATAATTCTGCTTACGATATTTTAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCAc                                   <  1:2387350/134‑1 (MQ=255)
                                                                                              ccTCGTTCAATGATTTGACTTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCAc                                   <  2:1136136/134‑1 (MQ=255)
                                                                                                tCGTTCAATGCTTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCACTACATGACTTAAGTTATCTTTGATAATAAATAATATTTAACCATATTATAATACAATATACTGTAATAAATCCATCACtt                                 >  1:1133512/1‑134 (MQ=255)
                                                                                                    tCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGAtt                             >  2:539666/1‑134 (MQ=255)
                                                                                                    tCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCAATCACTAGAtt                             >  2:1647485/1‑134 (MQ=255)
                                                                                                    tCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTAACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGAtt                             >  1:1257338/1‑134 (MQ=255)
                                                                                                      aaTGATTTGACCTTCTTTTAAAACATAATAATACGGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATTTTCTAATATAATATGCTATAATAAATACATCACTTGATTAc                           >  2:2184186/1‑134 (MQ=255)
                                                                                                       attaTTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTAcc                          <  1:1932835/131‑1 (MQ=255)
                                                                                                       aTGATTTGACCTTCTTTTAAAACATAATTGTATTGTCTATTTTTCTATTCATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTAcc                          <  1:1222699/134‑1 (MQ=255)
                                                                                                       aTGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTAcc                          <  1:2433681/134‑1 (MQ=255)
                                                                                                       aTGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTAcc                          <  2:88100/134‑1 (MQ=255)
                                                                                                        tGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCg                         >  1:2800532/1‑134 (MQ=255)
                                                                                                            ttGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATCATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGttac                     >  2:1264764/1‑132 (MQ=255)
                                                                                                                 ctttttTTAAAACATATTTGTGTTGATTATAGTTAAATACATGACTAAAATAATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCa                <  1:1085390/134‑1 (MQ=255)
                                                                                                                 cttcttTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCa                <  1:2154117/134‑1 (MQ=255)
                                                                                                                 cttcttTTAAAACATAATTGTACTGAAAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACAGTTCaaatcc                >  2:824551/1‑131 (MQ=255)
                                                                                                                 ctacgtttAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCa                <  2:138801/129‑1 (MQ=255)
                                                                                                                         aaaaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatga        <  2:403139/134‑1 (MQ=255)
                                                                                                                          aaaCATAATTGTACTTACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatgat       <  1:2200575/134‑1 (MQ=255)
                                                                                                                          aaaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatgat       <  1:2138599/134‑1 (MQ=255)
                                                                                                                           aaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatgatg      >  2:1978712/1‑134 (MQ=255)
                                                                                                                           aaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatgatg      >  1:2755526/1‑134 (MQ=255)
                                                                                                                               tAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAc  <  2:1322276/134‑1 (MQ=255)
                                                                                                                               tAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAc  <  1:2284776/134‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                  
TCAATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAAATGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAC  >  USA300TCH1516_ALE/1416328‑1416588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: