breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 11 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2529497 =264 (1.190)5 (0.020) 5/222 NT 2.0% coding (441/1551 nt) zinT Metal‑binding protein ZinT
?USA300TCH1516_ALE = 2529493 244 (1.220)coding (445/1551 nt) zinT Metal‑binding protein ZinT
* ? USA300TCH1516_ALE 2085296 =126 (0.570)7 (0.040) 7/218 NT 4.3% coding (173/201 nt) hlb_1 Phospholipase C
?USA300TCH1516_ALE = 2128343 197 (1.000)coding (1/825 nt) hlb_2 Phospholipase C
* ? USA300TCH1516_ALE 1579450 =168 (0.760)6 (0.030) 4/228 NT 4.0% coding (307/396 nt) USA300HOU_RS07730 hypothetical protein
?USA300TCH1516_ALE 1579474 = 135 (0.660)coding (283/396 nt) USA300HOU_RS07730 hypothetical protein
* ? USA300TCH1516_ALE 895785 =177 (0.800)5 (0.030) 5/212 NT 3.5% coding (806/822 nt) metQ_2 Methionine‑binding lipoprotein MetQ
?USA300TCH1516_ALE = 909740 127 (0.660)intergenic (‑663/‑371) USA300HOU_RS04500/csbD_1 hypothetical protein/Stress response protein CsbD
* ? USA300TCH1516_ALE = 802141169 (0.760)3 (0.010) 3/224 NT 1.7% intergenic (+382/+242) USA300HOU_RS03915/USA300HOU_RS03920 Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase
?USA300TCH1516_ALE = 802168 196 (0.970)intergenic (+409/+215) USA300HOU_RS03915/USA300HOU_RS03920 Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase
* ? USA300TCH1516_ALE 567293 =213 (0.960)3 (0.010) 3/224 NT 1.5% coding (197/471 nt) ctsR Transcriptional regulator CtsR
?USA300TCH1516_ALE = 567289 204 (1.010)coding (193/471 nt) ctsR Transcriptional regulator CtsR
* ? USA300TCH1516_ALE 92971 =222 (1.000)3 (0.010) 3/224 NT 1.4% intergenic (‑56/‑81) ricR_1/glpE Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE
?USA300TCH1516_ALE 92999 = 214 (1.060)intergenic (‑84/‑53) ricR_1/glpE Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE
* ? USA300TCH1516_ALE 68659 =104 (0.470)3 (0.020) 3/210 NT 3.1% coding (775/852 nt) USA300TCH1516_00061 hypothetical protein
?USA300TCH1516_ALE = 68655 97 (0.510)coding (771/852 nt) USA300TCH1516_00061 hypothetical protein
* ? NC_012417 = 19822606 (0.930)4 (0.000) 3/232 NT 0.16% intergenic (+215/+111) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2027 2554 (0.970)intergenic (+260/+66) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
* ? NC_012417 1947 =2681 (0.960)9 (0.000) 6/230 NT 0.36% intergenic (+180/+146) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 2073 = 2448 (0.940)intergenic (+306/+20) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein