breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 2529497 = | 264 (1.190) | 5 (0.020) | 5/222 | NT | 2.0% | coding (441/1551 nt) | zinT | Metal‑binding protein ZinT |
? | USA300TCH1516_ALE | = 2529493 | 244 (1.220) | coding (445/1551 nt) | zinT | Metal‑binding protein ZinT | |||||
* | ? | USA300TCH1516_ALE | 2085296 = | 126 (0.570) | 7 (0.040) | 7/218 | NT | 4.3% | coding (173/201 nt) | hlb_1 | Phospholipase C |
? | USA300TCH1516_ALE | = 2128343 | 197 (1.000) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
* | ? | USA300TCH1516_ALE | 1579450 = | 168 (0.760) | 6 (0.030) | 4/228 | NT | 4.0% | coding (307/396 nt) | USA300HOU_RS07730 | hypothetical protein |
? | USA300TCH1516_ALE | 1579474 = | 135 (0.660) | coding (283/396 nt) | USA300HOU_RS07730 | hypothetical protein | |||||
* | ? | USA300TCH1516_ALE | 895785 = | 177 (0.800) | 5 (0.030) | 5/212 | NT | 3.5% | coding (806/822 nt) | metQ_2 | Methionine‑binding lipoprotein MetQ |
? | USA300TCH1516_ALE | = 909740 | 127 (0.660) | intergenic (‑663/‑371) | USA300HOU_RS04500/csbD_1 | hypothetical protein/Stress response protein CsbD | |||||
* | ? | USA300TCH1516_ALE | = 802141 | 169 (0.760) | 3 (0.010) | 3/224 | NT | 1.7% | intergenic (+382/+242) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase |
? | USA300TCH1516_ALE | = 802168 | 196 (0.970) | intergenic (+409/+215) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
* | ? | USA300TCH1516_ALE | 567293 = | 213 (0.960) | 3 (0.010) | 3/224 | NT | 1.5% | coding (197/471 nt) | ctsR | Transcriptional regulator CtsR |
? | USA300TCH1516_ALE | = 567289 | 204 (1.010) | coding (193/471 nt) | ctsR | Transcriptional regulator CtsR | |||||
* | ? | USA300TCH1516_ALE | 92971 = | 222 (1.000) | 3 (0.010) | 3/224 | NT | 1.4% | intergenic (‑56/‑81) | ricR_1/glpE | Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE |
? | USA300TCH1516_ALE | 92999 = | 214 (1.060) | intergenic (‑84/‑53) | ricR_1/glpE | Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE | |||||
* | ? | USA300TCH1516_ALE | 68659 = | 104 (0.470) | 3 (0.020) | 3/210 | NT | 3.1% | coding (775/852 nt) | USA300TCH1516_00061 | hypothetical protein |
? | USA300TCH1516_ALE | = 68655 | 97 (0.510) | coding (771/852 nt) | USA300TCH1516_00061 | hypothetical protein | |||||
* | ? | NC_012417 | = 1982 | 2606 (0.930) | 4 (0.000) | 3/232 | NT | 0.16% | intergenic (+215/+111) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
? | NC_012417 | = 2027 | 2554 (0.970) | intergenic (+260/+66) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
* | ? | NC_012417 | 1947 = | 2681 (0.960) | 9 (0.000) | 6/230 | NT | 0.36% | intergenic (+180/+146) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
? | NC_012417 | 2073 = | 2448 (0.940) | intergenic (+306/+20) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |