breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 512,643 | 0 | A | G | 58.5% | 24.4 / 57.7 | 54 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
Marginal new junction evidence (sorted from low to high skew) | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000731 | = 4381 | 74 (0.850) | 5 (0.010) | 4/266 | 11.4 | 1.1% | intergenic (+346/‑119) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein |
? | NC_012417 | = 1975 | 860 (1.040) | intergenic (+208/+118) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
* | ? | CP000731 | = 2334 | 101 (1.160) | 5 (0.010) | 4/266 | 11.4 | 1.0% | intergenic (+114/+54) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
? | NC_012417 | = 1975 | 860 (1.040) | intergenic (+208/+118) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
* | ? | NC_012417 | = 2937 | 956 (1.100) | 10 (0.010) | 8/270 | 35.9 | 1.1% | intergenic (‑263/–) | USA300HOU_RS14900/– | hypothetical protein/– |
? | NC_012417 | = 2949 | 874 (1.040) | intergenic (‑275/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
* | ? | NC_012417 | = 1982 | 909 (1.040) | 5 (0.010) | 4/266 | 39.1 | 0.59% | intergenic (+215/+111) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
? | NC_012417 | = 2027 | 832 (1.000) | intergenic (+260/+66) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
* | ? | NC_012417 | 2664 = | 875 (1.000) | 3 (0.000) | 3/272 | 40.4 | 0.33% | coding (11/582 nt) | USA300HOU_RS14900 | hypothetical protein |
? | NC_012417 | 2715 = | 937 (1.110) | intergenic (‑41/–) | USA300HOU_RS14900/– | hypothetical protein/– |