breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE512,6430AG58.5% 24.4 / 57.7 54intergenic (+711/‑6052)recR/speA_2Recombination protein RecR/Arginine decarboxylase

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 438174 (0.850)5 (0.010) 4/266 11.4 1.1% intergenic (+346/‑119) USA300HOU_pUSA300HOUMR0006/cadR hypothetical protein/cadmium binding protein
?NC_012417 = 1975 860 (1.040)intergenic (+208/+118) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
* ? CP000731 = 2334101 (1.160)5 (0.010) 4/266 11.4 1.0% intergenic (+114/+54) USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 hypothetical protein/hypothetical protein
?NC_012417 = 1975 860 (1.040)intergenic (+208/+118) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
* ? NC_012417 = 2937956 (1.100)10 (0.010) 8/270 35.9 1.1% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 874 (1.040)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
* ? NC_012417 = 1982909 (1.040)5 (0.010) 4/266 39.1 0.59% intergenic (+215/+111) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2027 832 (1.000)intergenic (+260/+66) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
* ? NC_012417 2664 =875 (1.000)3 (0.000) 3/272 40.4 0.33% coding (11/582 nt) USA300HOU_RS14900 hypothetical protein
?NC_012417 2715 = 937 (1.110)intergenic (‑41/–) USA300HOU_RS14900/– hypothetical protein/–