New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 6444 (0.400)3 (0.040)
+TTGTTATATTAAGTTTATTATAGCACTTTAAAT
3/194 NT 15.5% intergenic (–/‑168) –/repA –/replication protein A
?CP000731 = 27041 0 (0.000)intergenic (‑194/–) USA300HOU_pUSA300HOUMR0033/– partitioning protein/–

ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/30‑64
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAATATCATAAACCTTTCATAAACCCTTG  <  CP000731/27041‑26961
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ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAATATCATAAACCTTTCATA          >  2:86173/1‑141
 CAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAATATCATAAACCTTTCATAA         >  1:176516/1‑141
        CCCAACTACTGGTAATAGTCGGGGTTTTTGTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAATATCATAAACCTTTCATAAACCCTTG  >  1:50730/1‑141
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ACAAAAACCCCAACTACTGGTAATAGTCGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/30‑64
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAATATCATAAACCTTTCATAAACCCTTG  <  CP000731/27041‑26961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.