Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,615,078 | A→G | 17.0% | G919G (GGT→GGC) | radD ← | Putative DNA repair helicase RadD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,615,078 | 0 | A | G | 17.0% | 98.6 / 16.1 | 47 | G919G (GGT→GGC) | radD | Putative DNA repair helicase RadD |
Reads supporting (aligned to +/- strand): ref base A (27/12); new base G (4/4); total (31/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.16e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 |
CAACTTTACTAACATTCATTTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGATTCTAGCGTTCTA > USA300TCH1516_ALE/2614941‑2615216 | cAACTTTACTAACATTCATTTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAGCCt > 1:87115/1‑141 (MQ=255) cAACTTTACTAACATTCATTTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAGCCt > 1:451178/1‑141 (MQ=255) cAACTTTACTAACATTCATTTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAGCCt > 1:186040/1‑141 (MQ=255) cAACTTTACTAACATTCATTTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAGCCt > 1:343131/1‑141 (MQ=255) attcattTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCcag > 1:148289/1‑141 (MQ=255) ttttCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTCCTATTTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTc > 1:354797/1‑141 (MQ=255) ttttCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTc > 1:154572/1‑141 (MQ=255) ttttCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTc > 2:414977/1‑141 (MQ=255) ggTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTaaa > 1:361528/1‑141 (MQ=255) ggTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTaaa > 1:98695/1‑141 (MQ=255) ggTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTaaa > 1:386319/1‑141 (MQ=255) ttACATTAATTTGTTAGATAACTATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAaataa < 2:32423/141‑1 (MQ=255) ttACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAaataa < 2:323079/141‑1 (MQ=255) tAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATAcc > 2:352666/1‑141 (MQ=255) tAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATAcc > 2:182865/1‑141 (MQ=255) tAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATAcc > 2:367546/1‑141 (MQ=255) aGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACca > 1:438786/1‑141 (MQ=255) aTAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACcatc > 2:37357/1‑141 (MQ=255) atcatcTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCtttttt > 1:161813/1‑141 (MQ=255) atcatcTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCtttttt > 1:161785/1‑141 (MQ=255) ctTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACa < 2:291416/141‑1 (MQ=255) ctTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACa > 2:296543/1‑141 (MQ=255) tGCTAAATCCATAGTTACTACGTTTTAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTAAAAAGTAAAAAAATATACATTTTAAt < 2:397774/141‑1 (MQ=255) cTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTc < 1:137403/141‑1 (MQ=255) aaTCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCtt > 1:52744/1‑141 (MQ=255) aTCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCttt > 2:34219/1‑141 (MQ=255) aTCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCttt > 1:439188/1‑141 (MQ=255) tCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCtttt > 1:180350/1‑141 (MQ=255) ttACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTAt > 1:272249/1‑141 (MQ=255) ggCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAAct > 2:397907/1‑141 (MQ=255) gCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAActt < 2:161785/141‑1 (MQ=255) gCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAActt < 2:161813/141‑1 (MQ=255) aTTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAActtct > 2:157561/1‑141 (MQ=255) aTTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAActtct > 2:33860/1‑141 (MQ=255) tttATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCttt < 1:367546/141‑1 (MQ=255) tttATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCttt < 1:352666/141‑1 (MQ=255) tttATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCttt < 1:182865/141‑1 (MQ=255) aTCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGa > 1:83742/1‑141 (MQ=255) aTCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGa > 1:10222/1‑141 (MQ=255) aTCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGa > 1:384329/1‑141 (MQ=255) cTTGCTTTTCTGAGCCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGAtt < 2:343131/141‑1 (MQ=255) cTTGCTTTTCTGAGCCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGAtt < 2:186040/141‑1 (MQ=255) cTTGCTTTTCTGAGCCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGAtt < 2:451178/141‑1 (MQ=255) cTTGCTTTTCTGAGCCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGAtt < 2:87115/141‑1 (MQ=255) ttGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGATTc < 2:180350/141‑1 (MQ=255) tCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGATTCTAGCGtt > 1:82459/1‑141 (MQ=255) gAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGATTCTAGCGTTCTa < 1:397907/141‑1 (MQ=255) | CAACTTTACTAACATTCATTTTTCGGTTTACATTAATTTGTTAGATAACGATATATATCATCTCTTACAGCTTTATCCAGTGCTAAATCCATCGTTACTACGTTTGAACCATTCGGCATTTTATCTTGCTTTTCTGAACCTTCTATATATCCAGCAGTTCCTAAATAATAAAAATATATACCATCATCATCTTTTTTCTGTACAAAAATATACATTTTAATTCCTTTTGCTCTATGGGACAAAATTTTCTGAACTTCTTTTGATTCTAGCGTTCTA > USA300TCH1516_ALE/2614941‑2615216 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |