Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,372,751 | A→T | L342* (TTA→TAA) | pbuG ← | Guanine/hypoxanthine permease PbuG |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,372,751 | 0 | A | T | 100.0% | 54.4 / NA | 19 | L342* (TTA→TAA) | pbuG | Guanine/hypoxanthine permease PbuG |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (5/14); total (5/14) |
AGGCTGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTAATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTG > USA300TCH1516_ALE/2372614‑2372886 | aGGCTGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTtata > 1:221084/1‑141 (MQ=255) tGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACCCCTACCACCACTAAGGCTGGTGTCGAATCTTTACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGaa > 1:122986/1‑141 (MQ=255) gCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAaac < 1:281197/141‑1 (MQ=255) aCTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAaacaa < 2:264374/141‑1 (MQ=255) ttCCAGTTTATCTCAGCAAGGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTa < 2:195068/141‑1 (MQ=255) ttCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTa < 2:54450/141‑1 (MQ=255) aGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTAGAGGAAACAACAACCTGTTACGATACTAGCaa < 1:80883/141‑1 (MQ=255) tATCTCAGCAAAGTTGGCAGCCATTAATACACCTACCACCACTAAGGCTTGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATcc < 2:244493/141‑1 (MQ=255) tctcAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTg < 1:135345/141‑1 (MQ=255) acCTACCACCACTAGGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGt < 2:224906/141‑1 (MQ=255) accacTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCg < 1:193205/141‑1 (MQ=255) ccacTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGa < 1:264135/141‑1 (MQ=255) tcaGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGAtata < 1:88717/139‑1 (MQ=255) tCGTAACTGCACTTGTTACAACAGCGATTAACGGACTGAAGAACAGCGCTTATAGAAAACAACAACATGTTACGATACTAGCAAATCCTGTTACAACACCTACAGCAACACCTGAAGTTGATTCGATATAACAAtttgatt > 2:98222/1‑138 (MQ=255) gTAACTGCACTTGTTACAACAGCGATTAAAGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAACACCTACAGCAACACCTAAAATTTAATCCATATAAAAAGTTGTTTTa > 2:1595/1‑141 (MQ=255) tGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAAAACATGAAGTTGATTCGATATAGTCAGTCGTTGTAgttgt > 2:257339/1‑141 (MQ=255) aCTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTcc < 1:116591/141‑1 (MQ=255) aaaGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTaa < 2:221084/141‑1 (MQ=255) aaGAACAGGGCTTATAGTGAACAACAGCCTTTTACGATATTAGCAAATCCTGTTCTAGCACCTACAGCAACATCTGAAGTTGACTCGATATAAGAATTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTaaa < 2:34375/141‑1 (MQ=255) gcgcTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTATAGTTCTTCCACAAACTGATCCTCCGATCGTAGCTAAAGAAtata > 2:92883/1‑138 (MQ=255) | AGGCTGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTAATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTG > USA300TCH1516_ALE/2372614‑2372886 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |