Predicted mutation
evidence seq id position mutation annotation gene description
RA USA300TCH1516_ALE 2,372,751 A→T L342* (TTA→TAA)  pbuG ← Guanine/hypoxanthine permease PbuG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,372,7510AT100.0% 54.4 / NA 19L342* (TTA→TAA) pbuGGuanine/hypoxanthine permease PbuG
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (5/14);  total (5/14)

AGGCTGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTAATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTG  >  USA300TCH1516_ALE/2372614‑2372886
                                                                                                                                         |                                                                                                                                       
aGGCTGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTtata                                                                                                                                      >  1:221084/1‑141 (MQ=255)
    tGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACCCCTACCACCACTAAGGCTGGTGTCGAATCTTTACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGaa                                                                                                                                  >  1:122986/1‑141 (MQ=255)
      gCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAaac                                                                                                                                <  1:281197/141‑1 (MQ=255)
        aCTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAaacaa                                                                                                                              <  2:264374/141‑1 (MQ=255)
                          ttCCAGTTTATCTCAGCAAGGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTa                                                                                                            <  2:195068/141‑1 (MQ=255)
                          ttCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTa                                                                                                            <  2:54450/141‑1 (MQ=255)
                              aGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTAGAGGAAACAACAACCTGTTACGATACTAGCaa                                                                                                        <  1:80883/141‑1 (MQ=255)
                                  tATCTCAGCAAAGTTGGCAGCCATTAATACACCTACCACCACTAAGGCTTGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATcc                                                                                                    <  2:244493/141‑1 (MQ=255)
                                    tctcAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTg                                                                                                  <  1:135345/141‑1 (MQ=255)
                                                                acCTACCACCACTAGGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGt                                                                      <  2:224906/141‑1 (MQ=255)
                                                                       accacTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCg                                                               <  1:193205/141‑1 (MQ=255)
                                                                        ccacTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGa                                                              <  1:264135/141‑1 (MQ=255)
                                                                            tcaGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGAtata                                                          <  1:88717/139‑1 (MQ=255)
                                                                                       tCGTAACTGCACTTGTTACAACAGCGATTAACGGACTGAAGAACAGCGCTTATAGAAAACAACAACATGTTACGATACTAGCAAATCCTGTTACAACACCTACAGCAACACCTGAAGTTGATTCGATATAACAAtttgatt                                               >  2:98222/1‑138 (MQ=255)
                                                                                         gTAACTGCACTTGTTACAACAGCGATTAAAGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAACACCTACAGCAACACCTAAAATTTAATCCATATAAAAAGTTGTTTTa                                             >  2:1595/1‑141 (MQ=255)
                                                                                              tGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAAAACATGAAGTTGATTCGATATAGTCAGTCGTTGTAgttgt                                        >  2:257339/1‑141 (MQ=255)
                                                                                                 aCTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTcc                                     <  1:116591/141‑1 (MQ=255)
                                                                                                                            aaaGAACAGCGCTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTaa          <  2:221084/141‑1 (MQ=255)
                                                                                                                             aaGAACAGGGCTTATAGTGAACAACAGCCTTTTACGATATTAGCAAATCCTGTTCTAGCACCTACAGCAACATCTGAAGTTGACTCGATATAAGAATTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTaaa         <  2:34375/141‑1 (MQ=255)
                                                                                                                                    gcgcTTATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTATAGTTCTTCCACAAACTGATCCTCCGATCGTAGCTAAAGAAtata  >  2:92883/1‑138 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AGGCTGGCACTGCAACTTCAAAACTTTTCCAGTTTATCTCAGCAAAGTTTGCAGCCATTAATACACCTACCACCACTAAGGCTGGTGTCGTAACTGCACTTGTTACAACAGCGATTAACGGACTAAAGAACAGCGCTAATAGGAAACAACAACCTGTTACGATACTAGCAAATCCTGTTCTAGCACCTACAGCAACACCTGAAGTTGATTCGATATAAGAAGTTGTTGTAGTTGTTCCAAAAACTGATCCTACAATCGTAGCTAAAGAATCTG  >  USA300TCH1516_ALE/2372614‑2372886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: