Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000731 25,663 Δ1 bp 100% coding (316/333 nt) USA300HOU_pUSA300HOUMR0031 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073125,6630A.97.7% 4343.5 / 41.9 958coding (316/333 nt)USA300HOU_pUSA300HOUMR0031hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (1/17);  new base . (532/404);  total (534/424)
Fisher's exact test for biased strand distribution p-value = 8.11e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

Only 100 of 1048 total aligned reads displayed.

ATTGTATGTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATAGAAAACAATAAAT  >  CP000731/25523‑25803
                                                                                                                                             |                                                                                                                                            
 ttgtatGTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCCCCCAGTATTGAAGGATCTTGGTCGGTTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaa                                                                                                                                             >  1:2097081/1‑141 (MQ=255)
 ttgtatGTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGCAGGACTGGAGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaa                                                                                                                                             <  1:3224630/141‑1 (MQ=255)
 ttgtatGTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaa                                                                                                                                             >  1:619387/1‑141 (MQ=255)
   gtatGTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATaaaa                                                                                                                                           >  1:2893979/1‑141 (MQ=255)
          aTTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATAc                                                                                                                                   >  2:3317254/1‑141 (MQ=255)
             tACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGTTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACACATAAAAACTATACAtt                                                                                                                                >  2:2331877/1‑140 (MQ=255)
              acacTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCt                                                                                                                               >  1:1015506/1‑141 (MQ=255)
               cacTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTa                                                                                                                              >  1:2184327/1‑141 (MQ=255)
                   aGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAgg                                                                                                                          <  1:3457821/141‑1 (MQ=255)
                    gTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGt                                                                                                                         <  2:3620454/141‑1 (MQ=255)
                    gTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGt                                                                                                                         <  1:2828616/141‑1 (MQ=255)
                       cTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTaa                                                                                                                      <  1:2242539/141‑1 (MQ=255)
                        ttAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTaaa                                                                                                                     >  1:3575248/1‑141 (MQ=255)
                        ttAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTaaa                                                                                                                     <  2:1358750/141‑1 (MQ=255)
                        ttAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTaaa                                                                                                                     >  1:1995767/1‑141 (MQ=255)
                          aaaTTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAAtt                                                                                                                   >  1:1598210/1‑141 (MQ=255)
                           aaTTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTa                                                                                                                  >  2:2554603/1‑141 (MQ=255)
                            aTTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTaa                                                                                                                 >  2:3166079/1‑141 (MQ=255)
                                aCAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGaa                                                                                                             <  1:1318259/141‑1 (MQ=255)
                                aCAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGaa                                                                                                             >  1:3080354/1‑141 (MQ=255)
                                aCAGGGATGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTATTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGaa                                                                                                             <  1:3817550/141‑1 (MQ=255)
                                 cAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATTCATTTAAAGGTTAAATTAATGaaa                                                                                                            >  1:1863502/1‑141 (MQ=255)
                                 cAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTCAtctat                                                                                                            >  1:988844/1‑137 (MQ=255)
                                 cAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGaaa                                                                                                            >  1:2424731/1‑141 (MQ=255)
                                      ttGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATACAAAATaa                                                                                                       >  2:4114657/1‑140 (MQ=255)
                                       tatCACCAAGTATTGAAGGACCTATGTTTTCTCCATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGa                                                                                                      <  2:2648541/139‑1 (MQ=255)
                                        gTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATACTTGTGGGTGCAAGTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGaa                                                                                                     <  1:4375371/141‑1 (MQ=255)
                                         tCACCAAGTATTGAAGGATCTTGGTTTTCTTAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAAt                                                                                                    <  1:3151158/141‑1 (MQ=255)
                                           aCCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTa                                                                                                  <  1:3269222/141‑1 (MQ=255)
                                                gTATTGAAGGATCTTGGTTTGCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGaa                                                                                             <  1:1907792/141‑1 (MQ=255)
                                                 tATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAAAATTAGAGAat                                                                                            >  2:673495/1‑141 (MQ=255)
                                                  aTTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAata                                                                                           >  2:3878380/1‑141 (MQ=255)
                                                     gAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAg                                                                                        >  1:1449488/1‑141 (MQ=255)
                                                     gAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAg                                                                                        >  2:1071842/1‑141 (MQ=255)
                                                      aaGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTGTTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAGTTAAAGAATATAGa                                                                                       >  1:3735460/1‑141 (MQ=255)
                                                      aaGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGa                                                                                       >  1:1534666/1‑141 (MQ=255)
                                                      aaGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATACTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGATTAAATTAATGAAAAATAACATTAGAGAATATAGa                                                                                       >  2:718278/1‑141 (MQ=255)
                                                         gATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATACAATTAGAGAATATAGaaaa                                                                                    >  2:1254767/1‑141 (MQ=255)
                                                             ttGGTTTTATCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACaaa                                                                                <  2:920268/141‑1 (MQ=255)
                                                                 gTTTTCTCAATATCCATAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAAAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAg                                                                             <  1:1401811/141‑1 (MQ=255)
                                                                 gTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAg                                                                             >  2:2056171/1‑141 (MQ=255)
                                                                  ttttCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAgg                                                                            >  2:2235017/1‑141 (MQ=255)
                                                                  ttttCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATACTTTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGCAAAATAGAATTAGAGAATATAGAAAACAAAAAgg                                                                            >  1:1661340/1‑141 (MQ=255)
                                                                       tcAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAAttt                                                                       >  1:2666589/1‑141 (MQ=255)
                                                                        cAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAAtttt                                                                      >  2:3996595/1‑140 (MQ=255)
                                                                        cAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtc                                                                      <  1:472237/141‑1 (MQ=255)
                                                                         aaTATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTtct                                                                     <  1:514988/141‑1 (MQ=255)
                                                                          aaagcacgAAATTTTCTTTATAAGGCAAGTACTATTTCTTAAGCTGTTTAAATACTATACTACAAAGAAAAAAGATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATACAGAAAACAAAAAGGAATTtctc                                                                    <  2:2196156/134‑1 (MQ=255)
                                                                           tatGCAGAAATTTTCTTTATAATTATAGCACTAATTCTTATGGTGTTTAATTACTATACTATAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAACCCAAAAAGGAATTTCTCa                                                                   <  2:2720824/141‑1 (MQ=255)
                                                                             accAGAAAATTTATTAATAATTGTAGAACTATAACTTATACTGTATAAATACTATAAAACAAATAAAAAATATACATCTAAAGGAAAAAAAAAAAAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAg                                                                 <  2:2973037/140‑1 (MQ=255)
                                                                               cAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGaa                                                               >  1:573598/1‑141 (MQ=255)
                                                                                aGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGATTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGAAATTTCTCAAGaaa                                                              >  2:189348/1‑141 (MQ=255)
                                                                                aGAAAGTTTATTAATAATTGTAGCAATATTTCTTATGCTATTTAATTACTATACTACAAATAAAAAATATACATCTAATGATAAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGaaa                                                              <  2:3843263/141‑1 (MQ=255)
                                                                                  aaaTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACt                                                            <  2:1434881/141‑1 (MQ=255)
                                                                                   aaTTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACtt                                                           >  2:3732659/1‑141 (MQ=255)
                                                                                     ttttCTTTATAATTGTAGGAAAATTTCTTTTGCTGTTTAATGAATATACTACAAATAAAAAATATACATCTAAAGGTTAAAATAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTa                                                         <  2:1707536/141‑1 (MQ=255)
                                                                                      tttatttaTAAATATATAACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATATAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTaa                                                        <  2:468448/141‑1 (MQ=255)
                                                                                      tttCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTaa                                                        >  1:2319266/1‑141 (MQ=255)
                                                                                       ttCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAg                                                       <  1:1816973/141‑1 (MQ=255)
                                                                                        tCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGt                                                      >  1:2598942/1‑141 (MQ=255)
                                                                                        tCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGt                                                      >  2:2509346/1‑141 (MQ=255)
                                                                                         cTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGACACTTTAAGTa                                                     >  2:3245130/1‑141 (MQ=255)
                                                                                              taATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGaa                                                >  2:4392278/1‑141 (MQ=255)
                                                                                               aaTTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAAt                                               <  1:405512/141‑1 (MQ=255)
                                                                                                aTTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGTTTAAATTAATGAAAAACAGAATTAGAGAATATAGCAAACAAAAAGGAATTTCTCAAGACACTTTACGTAAAGAAtt                                              >  2:61535/1‑141 (MQ=255)
                                                                                                  tGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTaa                                            >  1:1104416/1‑141 (MQ=255)
                                                                                                   ttatcACTATTTCTTATGCTGTTTACTTACTATACTACAAATCAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAAAAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTaaa                                           <  1:706599/137‑1 (MQ=255)
                                                                                                   gTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTaaa                                           >  2:799714/1‑141 (MQ=255)
                                                                                                      gCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTGAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAgt                                        >  1:3388194/1‑141 (MQ=255)
                                                                                                       cACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGTAACTAAAAGTAAAGAATTAAAAgag                                       >  2:1551114/1‑139 (MQ=255)
                                                                                                        aCTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAACAATTAAAAgtat                                      >  2:2895485/1‑139 (MQ=255)
                                                                                                         aaaTTTCATATGCTGTTTAATTACTATAATACAAATAAAAAATATACATATAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTc                                     <  2:1640486/139‑1 (MQ=255)
                                                                                                            tttCTTATGCTGTTTAATTACTATACAACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAg                                  <  1:1198104/141‑1 (MQ=255)
                                                                                                            atacatATGCAGTATAAATACTAAACAACAAATAAAAAATATACATCAAAAAGTAAAATTAATGAAAAATAGAATTAGAGAAAAAAAAAAAAAAAAAGGAATTTCTCAAGAAACTTTACGTAAAGAATTAAAAGTGTCTAg                                  <  2:3057323/136‑1 (MQ=255)
                                                                                                               cTTATGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCa                               >  1:4297863/1‑141 (MQ=255)
                                                                                                               attATGGTGTTTAAATACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCa                               <  2:4212844/140‑1 (MQ=255)
                                                                                                                  aTGCTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAAc                            >  1:1728706/1‑141 (MQ=255)
                                                                                                                  aTGCTGTTTAATTACTATAATACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAACGAATTAAAAGTGTCTAGGCAAAc                            <  2:553621/141‑1 (MQ=255)
                                                                                                                  aTGCTGTTGAAATACGATAGGACAAATAAAAAATATACATCTAAAGGTAAAAATAATGAAAAATAGAATTAGAGAAAAAAAAAAAAAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAAc                            <  2:2100121/141‑1 (MQ=255)
                                                                                                                    gCTGTTTAATTACTAGACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTa                          <  1:2732684/141‑1 (MQ=255)
                                                                                                                    gCTGTTTAATTAATATAAAAAAAATAAAAAATATACATCTAAAGGTAAAAAAAATAAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTa                          <  2:3355711/141‑1 (MQ=255)
                                                                                                                     cTGTTTAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTAt                         >  1:4128132/1‑141 (MQ=255)
                                                                                                                       gTTTAATTACTATAATACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTa                       <  1:880256/141‑1 (MQ=255)
                                                                                                                         ttAATTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAAt                     >  1:8078/1‑141 (MQ=255)
                                                                                                                           aaTTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTAAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGc                   >  1:3009555/1‑141 (MQ=255)
                                                                                                                           aaTTACTATAAAACAAATAAAAAATATACATCTAAAGGTAAAAATAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGc                   <  2:3575248/141‑1 (MQ=255)
                                                                                                                            aTTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCa                  <  2:2424731/141‑1 (MQ=255)
                                                                                                                            aTTACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAAATAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGACTCAAAAGAGTCTAGGCAAACTATTAATGCa                  >  2:1772817/1‑141 (MQ=255)
                                                                                                                            aTTACTATACTAACAACAAAAATTATACATCTGAAGGTTAACTTCTTCGAAGAAAAAAAACGTAAATTTATAAAATAAAAAGAAAATTCTCAATAAACATTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCa                  >  2:4292716/1‑141 (MQ=255)
                                                                                                                             ttACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCaa                 >  1:4190722/1‑141 (MQ=255)
                                                                                                                             ttACTATACTACAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCaa                 >  1:3357314/1‑141 (MQ=255)
                                                                                                                              tactatactaCAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAAt                >  2:394043/1‑141 (MQ=255)
                                                                                                                              tactatactaCAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAAt                >  2:3475558/1‑141 (MQ=255)
                                                                                                                              taatatactaAAAATAAAAAATATACATATAAAGGTTAAAATAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCCAt                <  2:1838492/138‑1 (MQ=255)
                                                                                                                               actatactaCAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATa               >  1:3972932/1‑141 (MQ=255)
                                                                                                                                ctatactaCAAATAAAAAATATACATCTAAAAGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATAg              <  1:3655769/141‑1 (MQ=255)
                                                                                                                                  atactaCAAATAAAAAATATACATCGAAAGATTAAATTAATGAAAAATATAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATAGaa            <  1:4248522/141‑1 (MQ=255)
                                                                                                                                     ctacAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATAGaaaaa         >  1:3880005/1‑140 (MQ=255)
                                                                                                                                     ctacAAATAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATAGAAAAc         >  1:2522856/1‑141 (MQ=255)
                                                                                                                                        aaaaaaaaaaaATATAAATAGAAAGGATAAAATAAAGAAAAATAGAAATAGAGAATATAGAAAAAAAAAAGGAATGAATGAAGAAAAATTAAGTAAAGAATTAAAAGTGTATAGGAAAAATATTAATGCAATAGAAAACaa       <  2:2793755/140‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                            
ATTGTATGTTATTTACACTAGTGCTTAAATTTACAGGTTTGTCACCAAGTATTGAAGGATCTTGGTTTTCTCAATATCCAGAAATTTTCTTTATAATTGTAGCACTATTTCTTATGCTGTTTAATTACTATACTACAAATAAAAAAATATACATCTAAAGGTTAAATTAATGAAAAATAGAATTAGAGAATATAGAAAACAAAAAGGAATTTCTCAAGAAACTTTAAGTAAAGAATTAAAAGTGTCTAGGCAAACTATTAATGCAATAGAAAACAATAAAT  >  CP000731/25523‑25803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: