New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 52495 = | 282 (0.770) | 342 (0.950) +T |
9/258 | NT | 53.3% | intergenic (+105/‑568) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
? | USA300TCH1516_ALE | = 52988 | 321 (0.880) | intergenic (+598/‑75) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
Only 100 of 755 total aligned reads displayed.
TTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG > USA300TCH1516_ALE/52848‑53128 | aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTCAGAGGCGGGGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg > 1:143548/1‑141 (MQ=11) gtagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAc > 1:1664351/1‑141 (MQ=33) taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGACATCATAACTAGTATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATg > 1:2075815/1‑141 (MQ=11) aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGTCGTAATCTCTCGAAAATCGCGTGAAATACTATgg < 1:859727/141‑1 (MQ=255) tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGtg > 1:470212/1‑140 (MQ=38) gcgcgAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATGGTTTGAAATCATCGTAGGAATCGCGCGAAAATCacgtgaaataatcagggcaa < 2:3732318‑M2/141‑21 (MQ=255) aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAGGTCATGGTAGTAATCGCGCGAAAAGCGCGGGAAAGACTATGGTAGAAGGttt > 1:318105/1‑141 (MQ=14) aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTg > 1:3355149/1‑141 (MQ=255) aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTg > 1:2272885/1‑141 (MQ=255) tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAg < 1:2006581/141‑1 (MQ=255) acgcgTGAAATCATCAGAGGAATCGGTTGAACTAATCGTAGTAATCGCGCGAAAAGCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAg < 2:2392227/140‑1 (MQ=14) tGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAAt < 1:36678/141‑1 (MQ=255) cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt > 1:1852282/1‑141 (MQ=255) ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTCAGAGGAATGGTTTGAGAACATTGTAGTAATATCGTGAAAATCATGTTAAATACTATTGTAGATGCATAGAGTAAATAAATGTAgagagt > 2:3522997/1‑136 (MQ=9) gAATGGTTTGAAGTCATCGTAGTAATCGCGCGAAAAACGCGTGAAAGAATCAGAGGAATCGTTTGAAATTATCGTAGCAATCGCGCGAAAATGccgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgc > 2:3000229‑M2/1‑93 (MQ=255) tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCTGAGGAACCGTTTGAAAAAATCGTAGAAATAGCGCGAAACTTACGTGAAGTAGTATGTTAGATGGATAGAGTAAGTGAATAGAGTATTGAAataaa > 2:2194112/1‑139 (MQ=9) aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAGTATTTATgg > 1:161169/1‑141 (MQ=255) aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATgg > 1:2943435/1‑141 (MQ=255) cGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgga < 1:3040731/141‑1 (MQ=255) tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagg < 1:2893918/141‑1 (MQ=255) agtaATCGCCCGAAAATCGCGTCAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagga < 1:1555441/141‑1 (MQ=255) agtaAGCGCGCGAAAATCAGGTGAAATAATGAGGGGGATCCTAAAAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagga < 2:43687/141‑1 (MQ=25) taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAt < 1:1632640/141‑1 (MQ=255) aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAtt < 1:4261354/141‑1 (MQ=255) aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTg < 1:2226796/141‑1 (MQ=255) aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTg < 1:2575427/141‑1 (MQ=255) aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTg < 1:355881/141‑1 (MQ=255) aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATAGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAAAACTATGGTAGACGGTTTGAGTAAATTACTGGAGTATTTTAAGATTTATGGTTTGGAGGAATTg > 2:1046654/1‑141 (MQ=255) aTCGCGAGAAAATCTCGTGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGCCGCTTTGATTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTg < 2:4297256/141‑1 (MQ=21) tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATAGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGATTTGGAGGAAtaaa > 2:4163278/1‑138 (MQ=255) cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCg < 1:2384075/141‑1 (MQ=255) cctgcacaatcccgtaAGATAGTGAGGGGAATCGCGTGAAATCATACTAATAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaa > 2:3785765‑M2/8‑66 (MQ=255) cgAAAAGCGCGTGAAATAATCAGAGGAAGCGGTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGCCGGTTTGAGTAACTTGATGGAGTATTTTAATATTTATGGTATGGAGGAATTGCGTTgg > 1:3102481/1‑140 (MQ=25) aaaTCGCGTGAAATAATCAGATGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt > 1:742707‑M2/1‑60 (MQ=255) atctagggaaatcatCAGAGCATACGTTTGAAATCATAGTAGTAATCGTGCGGAAATCacgtgaaataatcagaggaatcgtttgaaatcatcggagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttga > 2:854283‑M2/8‑58 (MQ=255) aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATGGTAGGATACTCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga < 2:3120466/141‑1 (MQ=37) tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATagag < 2:3213368/141‑1 (MQ=255) tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCACGAAAATCGCGTGAAATACTATGGTAGACGGTTTGACTAATTTAATTGGGTACTGTAATAGTTACGGTTTGGAGGAATTGCGTTGCATagag > 2:1558445/1‑141 (MQ=21) gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa < 1:3415604/141‑1 (MQ=255) gcgAGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaat > 1:3794354‑M2/1‑55 (MQ=255) aaacgaaatAATGAAAGGAATCGTTTGAAAATATCGGAGTAATCGTGCGAAAATCgcgtgaaataatgagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaagcacgtgaaataatcagaggaatcgtttgaaat > 2:3902700‑M2/5‑55 (MQ=255) ttGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg < 2:2310925/140‑1 (MQ=255) aataatCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa < 1:1709507/141‑1 (MQ=255) ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgta < 2:3352122‑M2/141‑94 (MQ=255) taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaa > 2:183148‑M2/1‑47 (MQ=255) aaatcAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtag > 1:298311‑M2/2‑47 (MQ=255) aaatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAata < 1:1308385/140‑1 (MQ=255) tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaa < 1:3921168‑M2/74‑31 (MQ=255) tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaa < 1:1212665‑M2/73‑30 (MQ=255) tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaat < 1:2529266‑M2/65‑22 (MQ=255) tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatatat < 1:2796602/141‑1 (MQ=255) cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaactcatcgtagtaat < 1:3728568‑M2/141‑99 (MQ=255) cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgttt < 1:2412821‑M2/69‑27 (MQ=255) agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATag > 1:1078483/1‑141 (MQ=255) aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaat > 1:934516‑M2/1‑37 (MQ=255) aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgt < 1:175932‑M2/95‑60 (MQ=255) tagttTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgttaaataatcatagaaatccattgaaataataatcgtaatatcgcgaa < 2:1632640‑M2/139‑107 (MQ=255) tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttga < 1:11817‑M2/118‑84 (MQ=255) tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaa < 1:786288‑M2/65‑31 (MQ=255) gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaatactcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa < 1:43687‑M2/141‑109 (MQ=255) gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGa < 2:1664351/141‑1 (MQ=255) tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgttt > 1:3521645‑M2/1‑32 (MQ=255) tttAAAAACATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat > 1:4065121‑M2/1‑32 (MQ=255) ttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaagtcacgtgaaataataagaggaatcgttagaaatcatcgtagtaatcgcgcgaaaatc < 1:1966818‑M2/141‑111 (MQ=255) tcgaaAACATAGGAGAAATAGCGCGAACATCacgtgaaataatcagaggaagcgtttgaaatcatagtagaaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatc > 2:2569335‑M2/3‑31 (MQ=255) aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCa < 1:4309322/141‑1 (MQ=255) aaaGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCa < 1:998682/141‑1 (MQ=255) aaaaatcgtagTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgt > 1:576615‑M2/5‑27 (MQ=255) atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg < 2:2103566/141‑1 (MQ=255) catcGTAGAAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaa > 1:2333366‑M2/1‑24 (MQ=255) cataggagtaAGCGAGAGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaa < 2:649672/135‑1 (MQ=255) atcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacg < 2:751215‑M2/81‑59 (MQ=255) atcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGGGAAAGTAAATATATAGAGTATAAGAAATCACGaaa > 1:681071/1‑141 (MQ=255) gtagtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaata < 2:3428441‑M2/85‑66 (MQ=255) gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg < 2:2235498/141‑1 (MQ=255) tagtaATCGCGCGAAAAACacgtaaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataat > 1:1930014‑M2/1‑19 (MQ=255) agtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcg > 2:4049691‑M2/1‑18 (MQ=255) gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaa < 1:397829‑M2/79‑63 (MQ=255) gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaa < 1:3303144‑M2/47‑31 (MQ=255) gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaa > 2:3303144‑M2/1‑17 (MQ=255) aTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtcgtagtcgcccgaaaatcacttgaaaaaaacagaa < 2:54557‑M2/141‑128 (MQ=255) aTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgt < 1:3598691‑M2/106‑93 (MQ=255) aTCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaat > 1:1030050‑M2/1‑14 (MQ=255) ttattagaaaagcaagtgaaataataagagaaatagtttgaaataatagtagtaatggtgtgaaaatcacgtgaaataatcagaggaatcgtttgaaaacatcgtagtaatcgcgcgaaaatcacgtgaaataatcagagg > 2:191456‑M2/7‑13 (MQ=255) gcgcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtag < 2:1720129‑M2/50‑40 (MQ=255) cgcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag < 2:2890495‑M2/82‑73 (MQ=255) cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggattcggttgaaatggtaggagtaatcgcacgaaaatctcgtgaaataatcagaggaatag < 1:4161040‑M2/141‑134 (MQ=255) cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatgg < 1:891830‑M2/141‑134 (MQ=255) cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaa > 2:1212619‑M2/1‑8 (MQ=255) cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaa < 1:2643483‑M2/93‑86 (MQ=255) cgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa < 1:2149702/141‑1 (MQ=255) agAAAATCGCGTGAAATACTATGGTAGATGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa < 2:2459224/140‑1 (MQ=255) gAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGat > 1:2463013/1‑141 (MQ=255) aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcac < 1:2828112‑M2/62‑58 (MQ=255) aaaTCGCGTGAAATACTATGGTAGATGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGatat < 2:920042/141‑1 (MQ=255) aaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgt > 2:1395032‑M2/1‑4 (MQ=255) aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAtt < 1:3263382/141‑1 (MQ=255) tCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga > 2:2717954‑M2/1‑2 (MQ=255) cacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaatactcagaggaatcgtttgaaaacatcgtagtaatcgcgcgaaaattacgtgaaataatcagtggaatcgtgtgaca < 2:202911‑M2/141‑141 (MQ=255) cacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagagga < 1:1365875‑M2/75‑75 (MQ=255) | TTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG > USA300TCH1516_ALE/52848‑53128 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |