Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 151,520 C→A 5.3% S117R (AGC→AGA USA300HOU_RS00690 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE151,5200CA 5.3% 714.3 / 12.7 257S117R (AGC→AGAUSA300HOU_RS00690hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (149/86);  new base A (3/14);  total (154/103)
Fisher's exact test for biased strand distribution p-value = 3.91e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 259 total aligned reads displayed.

ATGATTATTACGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAGGATTAATGAAT  >  USA300TCH1516_ALE/151380‑151658
                                                                                                                                            |                                                                                                                                          
aTGATTATTACGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATCTGGGTTTCTCAGCGGCGATTTCTATTCCGGGAGGAGCATCTTTAAGTTAGGTAATAGc                                                                                                                                            >  1:1008134/1‑141 (MQ=255)
 tGATTATTACGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCa                                                                                                                                           >  1:834789/1‑141 (MQ=255)
  gATTATTACGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCaa                                                                                                                                          >  1:3106533/1‑141 (MQ=255)
   tttattaCGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCaaa                                                                                                                                         <  2:2978609/140‑1 (MQ=255)
        taCGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTCAGGATGTTTTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTACGGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGt                                                                                                                                    >  2:3596282/1‑141 (MQ=255)
        taCGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGt                                                                                                                                    >  1:3813399/1‑141 (MQ=255)
        taCGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGt                                                                                                                                    >  1:3699325/1‑141 (MQ=255)
          cGCTTTTGTTGCTATTTTTTTATGATTTGATCTTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGTTCATCTTTAAGTTAGGTAATAGCAAAAAAGTGa                                                                                                                                  <  2:3137542/141‑1 (MQ=255)
          cGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTAGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGTGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGTgg                                                                                                                                  >  2:633191/1‑140 (MQ=255)
           gCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGTGATGATCATCTTTAAGTTAGTTAATAGCaaaactgtgct                                                                                                                                 >  2:1416475/1‑134 (MQ=255)
           gCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGAt                                                                                                                                 <  2:1172328/141‑1 (MQ=255)
              ttgtttgCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGCTCGt                                                                                                                              <  2:3380332/141‑1 (MQ=255)
              ttgtttgCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGt                                                                                                                              <  2:3731373/141‑1 (MQ=255)
              ttgtttgCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGt                                                                                                                              >  1:490250/1‑141 (MQ=255)
              ttctatacTATTTTTGTATGATTTTATATTTATTACGGTTAATGTAGTTTTTGTATTTACAGTTAAAGATGCATTAGTAGTAATTTATTTCTATTTAGTGATAATCATCTTTAAATTAAGTAATAGCAAAAAAGTGATCGt                                                                                                                              <  2:3899837/134‑1 (MQ=255)
               tgtttgCTTTTTTTTGATTATTTGATATTTATTACTGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCAATTATTTTTATTTAGTGATGATCTTCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGtt                                                                                                                             <  2:3347082/141‑1 (MQ=255)
                gtttgTTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTa                                                                                                                            >  1:3064696/1‑141 (MQ=255)
                 tttgCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTAc                                                                                                                           <  2:1650023/141‑1 (MQ=255)
                    gCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCACAAAAGTGATCGTTACctc                                                                                                                        >  2:2126940/1‑141 (MQ=255)
                    gCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTATATTTCGAGATGATCATCTTTACGTTACGTACTAGCAAAAAACTAATCATTACctc                                                                                                                        >  2:885102/1‑141 (MQ=255)
                      tATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCtt                                                                                                                      >  1:2846583/1‑141 (MQ=255)
                        ttttttGATGATTTGATATTTATTACGGTTATGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGTGATCGTTACCTCttat                                                                                                                    <  2:1461054/141‑1 (MQ=255)
                         ttttttATTATTTGATATGTATTTCGGTTAAGGAAGTTATTGCATCTACAGTTAAATATGTATTTGTAGTCATTTATTTCTATTTAGTGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCttata                                                                                                                   <  2:4399685/141‑1 (MQ=255)
                          ttttGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCttatct                                                                                                                  >  1:2117556/1‑139 (MQ=255)
                          gtttGATGATGTGAGATGTATGACGGATAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATAATCTTTAAGTTAGGTAATAGAAAAAAAGTGATCGTTACCTCttatat                                                                                                                  <  2:871020/140‑1 (MQ=255)
                            atgatgaGTTGATATATATTACAGTTAAGAAAGTTCGTGCATCGAAAGTTAAATATTCATTTGTAGTCATTTTTTTATATTTCGGGTTGATTATTTTTAATTTAAATAATAAAAAAAAAGTGATCGTTACCTCttatatta                                                                                                                <  2:1601654/140‑1 (MQ=255)
                             tgatgaTTTGATATTTATTACGGTTAAGGAACTTCTTGCATCTACAGTTAAATCTGCATTTGTAGTCATTTCTTTCTATTTATCCATCATCCTCTTTAACTTAGGTAATACCACAAATGTGATCTCTCCCTCctctattat                                                                                                               >  2:750731/1‑141 (MQ=255)
                               ttgatTTGATATTTATTACGGTTAAGTAAGTTCTTGTATCTATAGTTATATATGCATTTGTAGTTATTTATTTCTATTTAGGGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATaa                                                                                                             <  2:1955446/140‑1 (MQ=255)
                               atgatTTTATATTTATTACTGTTAAGGAAGTTATTGTCTTTACATTTAAATATGCATTTTTAGTCATTTATTTCTATTTAGAGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATaa                                                                                                             <  2:2166089/141‑1 (MQ=255)
                               atagtttGTTATTTATTACGGTTAAGGAAGTTTTTGCATCTATAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTTAGTTATGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATaa                                                                                                             <  2:4003414/137‑1 (MQ=255)
                                tgatTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAAAAAAAAAAAAAAAAGTGATCGTTACCTCTTATATTATAAg                                                                                                            <  2:3036886/141‑1 (MQ=255)
                                tgatTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAATTATTTATTTATATTTAGGGATGATCATCTTTAAGTTAAAAAAAAAAAAAAAAGTGATCGTTACCTCTTATATTATAAg                                                                                                            <  2:3818953/141‑1 (MQ=255)
                                 gatTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGc                                                                                                           >  1:4128862/1‑141 (MQ=255)
                                 gatTGGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACTGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGc                                                                                                           <  2:363648/141‑1 (MQ=255)
                                   tttGATATTTATTACGGTTATGGAAGTTTTTGTTTCTACATTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGAAGATCATCTTTAAGTTAGGTAATAGCATAAAAGTGATCGTTACCTCTTATATTATAAGCAg                                                                                                         <  2:1107721/141‑1 (MQ=255)
                                   tttGATATTTATTACGGTTAAGGAAGTTATTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAg                                                                                                         <  2:4256632/141‑1 (MQ=255)
                                    ttGATATTTATTACGGTTAAGGAAGTTCTCGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAgt                                                                                                        <  2:3697574/141‑1 (MQ=255)
                                       atatTTATTACGGTTAAGGAAGTTCTTGTATCTACAGTTAAATATGCATTTTTAGTCATTTATTTCTATTTAGGGTTGATCATTTTTAAGTTAGGTAATAGCAAATAAGTGATCGTTACCTCTTATATTATAAGCAGtgtg                                                                                                     <  2:2429500/141‑1 (MQ=255)
                                            tattaCGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAAGGCTGATTATCTGTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACtat                                                                                                >  1:3236486/1‑141 (MQ=255)
                                               taCGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAgg                                                                                             >  1:3761691/1‑141 (MQ=255)
                                                aCGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCATAAAAGTGATAGTTCCTTCTTATATTATAAACAGTTTGACTATAgtt                                                                                            >  2:781747/1‑139 (MQ=255)
                                                 cagatAAGGAAGTTCGTGCATCTACAGTTAAATACTCATTTGTAGTCATTTATTTCTAATTAGGGATGATCTTTTTGCTGATAAATAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTc                                                                                           <  2:3844201/137‑1 (MQ=255)
                                                  ggTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCt                                                                                          >  1:1326044/1‑141 (MQ=255)
                                                    ttAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCtct                                                                                        >  2:3268997/1‑139 (MQ=255)
                                                      aaGGAAGTTCTTGCATCAAAAGATAAAAATGCATTTGTAGTCATTTATTTATATTTAGGGATGATCATCTTTAATTAAAAAAAAAAAAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTAttt                                                                                      <  2:4080849/141‑1 (MQ=255)
                                                       aGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTAtttt                                                                                     >  1:1853830/1‑141 (MQ=255)
                                                       aGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTAtttt                                                                                     >  1:1778398/1‑141 (MQ=255)
                                                        ggAAGTTCTTGCATCTACAGTTAAATATGCATTTGGAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTg                                                                                    <  1:3284712/141‑1 (MQ=255)
                                                          aaGTTTTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGta                                                                                  <  2:3809337/141‑1 (MQ=255)
                                                                 ttcATGTACAGGTAAATATACTTGTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGc                                                                           <  2:2874683/139‑1 (MQ=255)
                                                                 tGCATTTACAGTTAAATATTCATTTGTAGTCATTTATTTCTATTTAGGGATGATGATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTATATTTTGTATTATAGc                                                                           <  2:958915/141‑1 (MQ=255)
                                                                 tGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGc                                                                           >  1:1564069/1‑141 (MQ=255)
                                                                 tGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGc                                                                           >  2:2444664/1‑141 (MQ=255)
                                                                  gCATATACAGTTAAATATGCATGTGTAGTCATTTATTTCTATTGAGAGATGAACATCGTTAAGTTAGGTAATAGAAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATGTTGTCTTATAGCt                                                                          >  2:1462155/1‑141 (MQ=255)
                                                                         cAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGCTCGTTACCTCTTTTTGTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGa                                                                   <  2:2260209/141‑1 (MQ=255)
                                                                         cAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTTTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGa                                                                   <  2:3061035/141‑1 (MQ=255)
                                                                          aGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGaa                                                                  >  1:596116/1‑141 (MQ=255)
                                                                          aGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGaa                                                                  >  1:2580174/1‑141 (MQ=255)
                                                                            ttAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTATGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACa                                                                <  2:2041664/141‑1 (MQ=255)
                                                                            ttAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACa                                                                <  2:3210034/141‑1 (MQ=255)
                                                                            ttAAATATGCATTTGTAATCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACa                                                                <  2:4148033/141‑1 (MQ=255)
                                                                             tAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACaa                                                               >  1:3627891/1‑141 (MQ=255)
                                                                                atatGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTCTAGCTGGTTTGAACAAGTc                                                            >  1:2472417/1‑141 (MQ=255)
                                                                                atatGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTc                                                            >  1:3723712/1‑141 (MQ=255)
                                                                                  atGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTccc                                                          >  1:1244561/1‑141 (MQ=255)
                                                                                   tGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATCGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTATGTATTATAGCTGGTTTGCACAAGTcacc                                                         >  2:257958/1‑141 (MQ=255)
                                                                                     cATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCtt                                                       >  1:907659/1‑141 (MQ=255)
                                                                                     cATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCtt                                                       >  2:3495250/1‑141 (MQ=255)
                                                                                     cATTTGTAGTCATTTATTTCTATTTAGGAATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTAACTATAGATATATTTTGTATTATAGCTGGTTTGAACAACTCGCCtt                                                       >  2:1430105/1‑141 (MQ=255)
                                                                                       tttGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTATGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCACtttc                                                     >  2:404897/1‑140 (MQ=255)
                                                                                         tGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGCTCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTCTATTATAGCTGGTTTGAACAAGTCCCATTTACt                                                   >  2:2802554/1‑141 (MQ=255)
                                                                                         tGTAGTCATTTATTTATATATATGGATGATCATATTTAAGTTAAGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACCATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACt                                                   <  2:1868934/141‑1 (MQ=255)
                                                                                           tAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTaa                                                 >  1:1177974/1‑141 (MQ=255)
                                                                                            aGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGCACAAGTCCCCTTTACTAAt                                                >  1:2466455/1‑141 (MQ=255)
                                                                                            aGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAAt                                                >  1:4382279/1‑141 (MQ=255)
                                                                                             gtgttttacttCTATTTAAGGATGATCAGCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGTTTTTTTGATCAAGTCCCCTTTCCCAATg                                               <  2:1521523/137‑1 (MQ=255)
                                                                                             gTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATg                                               >  2:31044/1‑141 (MQ=255)
                                                                                             gTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATg                                               >  1:2940317/1‑141 (MQ=255)
                                                                                               cATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATaaa                                             >  2:550757/1‑141 (MQ=255)
                                                                                               cATTTATTTCTATTAAGGGTATAGCATCTTTAAGTTAGGTAATATCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGaa                                             <  2:4023795/141‑1 (MQ=255)
                                                                                                atttatttCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATTGCTGTTTTGAACTAGTCCCCTTTACTAATGaaa                                            >  1:2189209/1‑141 (MQ=255)
                                                                                                     tttCTATTTAGGGATGAGAATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACGTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTGCCCTTTACTAATGAAATTGtt                                       <  2:657696/141‑1 (MQ=255)
                                                                                                      ttCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGTAAAAAAGTGATGGATACCTATTATATTATAAGCAGTCTGACTATAGAACTATTTTGTATTATAGCTGGTATGAACAATCTCACATTACTAATGAAAtgatta                                      >  2:3236821/1‑136 (MQ=255)
                                                                                                           tttAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGCTTAAATTATTTTCCTTTACTAATGTAATTGTTATAttt                                 >  1:2776170/1‑141 (MQ=255)
                                                                                                           tatAGGGATGATCATCTTTAAGTTAAATAATAAAAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATAttt                                 <  2:3420953/139‑1 (MQ=255)
                                                                                                                ggATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTtgatg                            <  1:2126940/141‑1 (MQ=255)
                                                                                                                  atgatCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGaa                          >  2:1283336/1‑141 (MQ=255)
                                                                                                                    gatCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAAt                        >  1:4243854/1‑141 (MQ=255)
                                                                                                                    gatCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAAt                        >  2:1254842/1‑141 (MQ=255)
                                                                                                                        atcTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGTTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGt                    >  2:507931/1‑141 (MQ=255)
                                                                                                                          cTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTc                  >  1:1105975/1‑141 (MQ=255)
                                                                                                                          cTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTAATATTATAAGCAGTGTGACTATAGGTGCATTTCTGAGGATCGCTGGTTTCAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTc                  >  1:1674946/1‑141 (MQ=255)
                                                                                                                             tAAGTTAGGTAATAGCAAAAAAGTGATACATGCCTCCAGTACTATAAGAAATGTGACAATACGTCTATTATGAATTCTAGCTGATCTAAACTAATAAACTTTACTAATAAAATTCTTATATTTTAATTAAAAAATTTCaaa               >  2:1374338/1‑141 (MQ=255)
                                                                                                                             tAAGTTAGGTAATAGCAAAAAAATGATCGTTTCCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATTGCTTGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCaaa               <  2:2367970/141‑1 (MQ=255)
                                                                                                                               aGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAg             >  2:832664/1‑141 (MQ=255)
                                                                                                                                  tAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAGGAt          >  1:4313711/1‑141 (MQ=255)
                                                                                                                                   gggTAATAGCAAAAAAGTTATCGTTACTTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTATTAATGAATTTGTTATATTTTGATGAAATACGTTCAAAAGGAtt         <  2:3974608/140‑1 (MQ=255)
                                                                                                                                    ggTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTATGACTATAGGTATATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAGGATTa        >  2:2709911/1‑141 (MQ=255)
                                                                                                                                         aaGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGTTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACAAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAGGATTaatgaa   <  2:2931713/140‑1 (MQ=255)
                                                                                                                                          aGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAGGATTaatgaat  <  1:2664237/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                          
ATGATTATTACGCTTTGTTTGCTATTTTTTGATGATTTGATATTTATTACGGTTAAGGAAGTTCTTGCATCTACAGTTAAATATGCATTTGTAGTCATTTATTTCTATTTAGGGATGATCATCTTTAAGTTAGGTAATAGCAAAAAAGTGATCGTTACCTCTTATATTATAAGCAGTGTGACTATAGGTCTATTTTGTATTATAGCTGGTTTGAACAAGTCCCCTTTACTAATGAAATTGTTATATTTTGATGAAATACGTTCAAAAGGATTAATGAAT  >  USA300TCH1516_ALE/151380‑151658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: