Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,370,154 C→A 5.4% A15D (GCT→GAT)  USA300TCH1516_01280 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,370,1540CA 5.4% 946.2 / 4.1 357A15D (GCT→GAT) USA300TCH1516_01280hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (149/172);  new base A (2/29);  total (155/202)
Fisher's exact test for biased strand distribution p-value = 4.98e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 367 total aligned reads displayed.

TAGCGTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGTAATG  >  USA300TCH1516_ALE/1370014‑1370294
                                                                                                                                            |                                                                                                                                            
tAGCGTTTTTTATTACTTTTTTGCTGATATTAAATTTGTTATATTTTGTTAAATTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGc                                                                                                                                              <  2:492675/141‑1 (MQ=255)
  gCGTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTTAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTa                                                                                                                                            >  2:2377613/1‑141 (MQ=255)
   cGTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaa                                                                                                                                           <  2:2310177/141‑1 (MQ=255)
    tttttttATTAATTGTTTTCTGAAATTAAATTTGTTATATTTTGTTAAAGTATTATAAAGAATGAAAAAAGAGCTTGCAGGTATGATTAATACTTTAGGAATTCTAATTTGAATATCGAAAGAATTAACGAGTtaaataaa                                                                                                                                          <  2:3845520/140‑1 (MQ=255)
    gTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaa                                                                                                                                          <  1:421559/141‑1 (MQ=255)
    gTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaa                                                                                                                                          <  1:3040639/141‑1 (MQ=255)
    gTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaa                                                                                                                                          <  1:3169701/141‑1 (MQ=255)
    gTTTTTTATTACTTTTTTGCTGATCCTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATCGAAAGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaa                                                                                                                                          <  1:312293/141‑1 (MQ=255)
       ttttATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaag                                                                                                                                       >  1:924306/1‑141 (MQ=255)
       ttttATTAATTATTTGAGAATCTTAAAAATGTAATATTTTGTTATAGTCTTATAATGATTGAATAAACAAATTGAAGGTAGGTTTATTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaag                                                                                                                                       <  2:4051133/141‑1 (MQ=255)
         ttattaCTTGTTAGAGGAGATGAAATTTGTTATATTGTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaagaa                                                                                                                                     <  2:2098580/141‑1 (MQ=255)
          tattaCTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGCATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaagaaa                                                                                                                                    <  1:3693367/141‑1 (MQ=255)
          tattaCTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGATGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaagaaa                                                                                                                                    >  2:1130317/1‑141 (MQ=255)
           attaCTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaagaaaa                                                                                                                                   >  1:2678085/1‑141 (MQ=255)
              aCTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTaaaaagaaaaaag                                                                                                                                <  1:4105849/141‑1 (MQ=255)
              aCTTTTTTGCTGAACTTAAATTTGTTTTATTATGTTACAGTATCATAATGATTGAATAAACAAATTTAAGGTAGGTTTTTTAGTTGAGTATTTCTGATTTGAATATCGAATTAATTTAGTTGTCAGCTtaaaagacaaaaa                                                                                                                                >  2:3222306/1‑140 (MQ=255)
                 tttttGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCTAAAGAATTAAAGAGACATTCAAAAAGAAAAaagaag                                                                                                                             >  2:2652199/1‑141 (MQ=255)
                 tttttGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAaagaag                                                                                                                             <  1:2190219/141‑1 (MQ=255)
                  ttttGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGt                                                                                                                            <  1:1384169/141‑1 (MQ=255)
                  ttttGCTGATCTTAAACTAGATATATATTGTTAAAGTATTATAATGAATGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTAAGCTAAAAAGAAAAAAGAAGt                                                                                                                            <  2:3297968/141‑1 (MQ=255)
                  ttctGCTAATATAAAATTTAATATATTTAGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGt                                                                                                                            <  2:435690/138‑1 (MQ=255)
                   tttGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGATTTAATGAGTTAGCTAAAATGAAAAAAgtagta                                                                                                                           >  2:1947437/1‑141 (MQ=255)
                    ttGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAg                                                                                                                          >  1:1968053/1‑141 (MQ=255)
                       ttGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGAt                                                                                                                       <  2:936684/140‑1 (MQ=255)
                              tAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCa                                                                                                                <  1:2976419/141‑1 (MQ=255)
                              tAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAAGTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAAATAAAAAGAAAAGAGAAGTAGGATTAACTCa                                                                                                                <  2:765906/141‑1 (MQ=255)
                              tAAATTAGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCa                                                                                                                <  2:1861293/141‑1 (MQ=255)
                              aaaaTTTTTTATAGTGAGTTAAAGTATTATAATGATTGAATATACAAATTGAAGGTATGTTTTTTAATTTAGTAATTCTGATTTCAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCa                                                                                                                <  2:2490963/140‑1 (MQ=255)
                              aaaaTGTGTAATATGTGTTTAAAGTAATATAATGATTTAATAAACAAATTGAATGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCa                                                                                                                <  2:3529304/140‑1 (MQ=255)
                               aaaTTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTTTTTTTTTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAATAAGTAGGATTAACTCaa                                                                                                               >  2:3831618/1‑141 (MQ=255)
                                 aTTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCaaga                                                                                                             >  2:2985239/1‑141 (MQ=255)
                                 aTTTGTTATATTTGGTTAAAGTATTATAATGCTTGAATCAACAAATTGAAGGTAGGTTTTTTACTTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTAAGCTAAAAAAAAAAAAGAAGTCGGATTAACtaacga                                                                                                             >  2:4097559/1‑136 (MQ=255)
                                    tGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCaagaaga                                                                                                          >  2:1828152/1‑141 (MQ=255)
                                     tttATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCAAAAAAGAAAAAAGAAGTAGGATTAACTCaagaagaa                                                                                                         <  2:3619296/140‑1 (MQ=255)
                                      ttATATTTTGTTAAAGTATTATAATAATTGAATAAACAAATTGAGGGTATGTTTTTTAATTGAGTAATTCTGATTAGAATATCGAAAGAATTAACGAGTTAGATAAAAAGAAAAAAGAAGTAGGATTAACTCaagaagaag                                                                                                        <  2:1641433/141‑1 (MQ=255)
                                          atTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTTAGTAATTCTGATTTGAATATCGAAAGAATTAACGAATTAACTACAAAGAAAAAAGAAGTAAGATTAAATCaagaaaaaaacaa                                                                                                    >  2:1031450/1‑136 (MQ=255)
                                           ttttGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAg                                                                                                   <  1:4398985/141‑1 (MQ=255)
                                           ttttGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAg                                                                                                   <  1:2094106/141‑1 (MQ=255)
                                              tGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAg                                                                                                <  1:1682024/141‑1 (MQ=255)
                                               gTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGc                                                                                               <  2:3408285/141‑1 (MQ=255)
                                                ttAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCa                                                                                              <  1:1504679/141‑1 (MQ=255)
                                                ttAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCa                                                                                              <  1:3845034/141‑1 (MQ=255)
                                                ttAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCa                                                                                              >  1:754743/1‑141 (MQ=255)
                                                  aaaGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCaaa                                                                                            <  2:2792242/141‑1 (MQ=255)
                                                  aaaGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCaaa                                                                                            <  1:3312421/141‑1 (MQ=255)
                                                    aGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACa                                                                                          >  1:1092906/1‑141 (MQ=255)
                                                        ttatAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCt                                                                                      <  1:3965357/141‑1 (MQ=255)
                                                        ttatAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCt                                                                                      >  2:1605434/1‑141 (MQ=255)
                                                         tataATGAGTGAATAAAAAAATAGAAAGTAGAATTATGAATTGAGTAATTATGATAAGAATATCGAAAGAATTAACTAGTAAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGTAGAGGCAAAGGAGCAAACAGCCtt                                                                                     <  2:3675652/141‑1 (MQ=255)
                                                         tataAGGATAGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGAATTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCtt                                                                                     <  2:2924383/141‑1 (MQ=255)
                                                              tGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGaa                                                                                >  1:2392864/1‑141 (MQ=255)
                                                               gATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGaaa                                                                               >  2:4132590/1‑141 (MQ=255)
                                                                   gAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCt                                                                           >  1:3545673/1‑141 (MQ=255)
                                                                       aaaGAAATTGAAGGTAGGGTTGTTAATGGAGTAATTATGATTTGAATATAGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATc                                                                       <  2:1407375/141‑1 (MQ=255)
                                                                        aaCAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCt                                                                      >  1:1744799/1‑141 (MQ=255)
                                                                        aaCAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGATTATCt                                                                      >  2:3790170/1‑141 (MQ=255)
                                                                        aaCAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCtt                                                                     >  1:3623722/1‑141 (MQ=255)
                                                                        aaCAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGATAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCt                                                                      <  2:846823/141‑1 (MQ=255)
                                                                        aaCAAATTGAAGGTAGGTTTATTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCt                                                                      >  1:2821901/1‑141 (MQ=255)
                                                                         aCAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGAATTAACTCAAGAAGAAGCAAAAGAGCAAACAGCCTTAAGAAAAGCTTaacat                                                                     >  2:3195425/1‑137 (MQ=255)
                                                                          cAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTg                                                                    <  1:2652199/141‑1 (MQ=255)
                                                                             aTTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTgaga                                                                 >  2:3333145/1‑141 (MQ=255)
                                                                             aTTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGAAACAAACAGCCTTAAGAAAAGCTTATCTTgaga                                                                 >  2:2131119/1‑141 (MQ=255)
                                                                               tGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGt                                                               <  2:2678085/141‑1 (MQ=255)
                                                                                 aaGGTAGGTTTTTTAATTGAGTAATTCTGAATTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAATTAGGATTACCCCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGttt                                                             <  1:467561/141‑1 (MQ=255)
                                                                                    gtaggtTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAg                                                          <  1:1813534/141‑1 (MQ=255)
                                                                                     taggtTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGa                                                         <  1:4179782/141‑1 (MQ=255)
                                                                                            tttAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCTAAAAGAAGCAAAGGAGCAAAAAGCCCTACAAAAACCTTATCTTAAGAGTTTTAGAAAAGAGt                                                  >  2:3105912/1‑141 (MQ=255)
                                                                                            tttAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGt                                                  >  2:1450564/1‑141 (MQ=255)
                                                                                            tttAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGt                                                  >  1:2605044/1‑141 (MQ=255)
                                                                                             ttAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGtt                                                 >  1:2919266/1‑141 (MQ=255)
                                                                                              tAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGttt                                                >  1:4280155/1‑141 (MQ=255)
                                                                                                aTTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTaa                                              >  1:2219834/1‑141 (MQ=255)
                                                                                                 ttGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTaaa                                             <  1:4004989/141‑1 (MQ=255)
                                                                                                   gAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAaaca                                           <  2:1170729/141‑1 (MQ=255)
                                                                                                    aGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAGGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAaacaa                                          <  1:1255562/141‑1 (MQ=255)
                                                                                                    aGTAATTCAGATTTAAAAAAAGAAAGAATTAAAGAGATAGATAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTCTATCGAGAGTTTTAGAAAAGGGTTGAaacaa                                          <  2:4318700/141‑1 (MQ=255)
                                                                                                      tAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAacaaca                                        <  1:1617783/141‑1 (MQ=255)
                                                                                                          tggaaTTTAAATATAGAAAGAATTAAAGAAATAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAAtt                                    <  2:2612922/137‑1 (MQ=255)
                                                                                                          tCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAAtt                                    <  2:1327171/141‑1 (MQ=255)
                                                                                                            tGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAACAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGCCTTAAAGAAAAGGGTTTAAACAACAAAttaa                                  >  2:1766644/1‑139 (MQ=255)
                                                                                                            tGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGa                                  >  1:775229/1‑141 (MQ=255)
                                                                                                             gATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGaa                                 >  2:2469087/1‑141 (MQ=255)
                                                                                                               tttGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGaaaa                               >  1:2293849/1‑141 (MQ=255)
                                                                                                                     tatCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTaa                         >  1:992005/1‑141 (MQ=255)
                                                                                                                       tCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAACGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAg                       <  1:146179/141‑1 (MQ=255)
                                                                                                                        cGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCGTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGt                      >  2:2262402/1‑141 (MQ=255)
                                                                                                                            aGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACGCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAAtt                  <  1:562746/141‑1 (MQ=255)
                                                                                                                               atcaaCGAGTTAGATAAAAAGAAAAAAGAATTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGAt               <  2:1705776/138‑1 (MQ=255)
                                                                                                                               aTTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGAt               <  2:655575/141‑1 (MQ=255)
                                                                                                                                  aaCGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACGAAAGTAATTGATCCa            >  1:1318471/1‑141 (MQ=255)
                                                                                                                                   aCGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAg           >  1:1131539/1‑141 (MQ=255)
                                                                                                                                    cGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAgt          >  1:345393/1‑140 (MQ=255)
                                                                                                                                       gtacgCTAAAGAGAAAAAAGGAGTAGGAGCAACCAAAGAAGAAGAAAGGGTGCAAACAGCCTTAAGAAAAGCTTATGATGAGAGTGTTAGAAAAGGGTTTCAACAACAAATTGAACATACTAAAGTAATTGATCCAGAAgg       <  2:3964218/137‑1 (MQ=255)
                                                                                                                                       gTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAgg       >  1:4148421/1‑141 (MQ=255)
                                                                                                                                       gTTAGATAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAgg       <  2:154879/141‑1 (MQ=255)
                                                                                                                                         tAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGATGGTGACAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGTa     <  1:825207/141‑1 (MQ=255)
                                                                                                                                         tAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGTa     <  1:233730/141‑1 (MQ=255)
                                                                                                                                            cTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGCAAACGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGTAatg  <  1:1041605/141‑1 (MQ=255)
                                                                                                                                            cTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGTAatg  <  1:1872740/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TAGCGTTTTTTATTACTTTTTTGCTGATCTTAAATTTGTTATATTTTGTTAAAGTATTATAATGATTGAATAAACAAATTGAAGGTAGGTTTTTTAATTGAGTAATTCTGATTTGAATATCGAAAGAATTAACGAGTTAGCTAAAAAGAAAAAAGAAGTAGGATTAACTCAAGAAGAAGCAAAGGAGCAAACAGCCTTAAGAAAAGCTTATCTTGAGAGTTTTAGAAAAGGGTTTAAACAACAAATTGAAAATACTAAAGTAATTGATCCAGAAGGTAATG  >  USA300TCH1516_ALE/1370014‑1370294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: