Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,435,073 G→A 10.0% G144S (GGT→AGT) ‡ dapH → 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,435,0730GA10.0% 725.1 / 15.4 279G144S (GGT→AGT) ‡dapH2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base G (76/161);  new base A (36/2);  total (112/167)
Fisher's exact test for biased strand distribution p-value = 5.88e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 280 total aligned reads displayed.

GGTGCGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGT  >  USA300TCH1516_ALE/1434935‑1435213
                                                                                                                                           |                                                                                                                                            
ggTGCGTTTATTAGAGAACAAGCAGAATATATACTTGTGGCTGTCGTTAAGATGGGCGCAACAATTAATATTGGCGCAGGCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGt                                                                                                                                            <  1:3925728/141‑1 (MQ=255)
       ttattaGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATg                                                                                                                                     <  1:1167688/141‑1 (MQ=255)
             gagaAGAAGACATTATAGAAGATGGTGTGGTCGTCTTGATGGGGGTAACTATTATTATTGGCGTAGTAGTTGATAATAGTACTATTATTGATATGAAGGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATg                                                                                                                               <  2:3589687/141‑1 (MQ=255)
              agaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGt                                                                                                                              <  1:3367208/141‑1 (MQ=255)
               gaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAAAGTACATGTa                                                                                                                             >  2:3082087/1‑141 (MQ=255)
               gaACAAGCCATTATTGAAGATGGAGCTGACCATCTGATGTGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                             >  1:1917573/1‑141 (MQ=255)
                   aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAgggg                                                                                                                         <  1:1066410/141‑1 (MQ=255)
                   aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAgggg                                                                                                                         <  1:3578510/141‑1 (MQ=255)
                     gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                       <  1:871170/141‑1 (MQ=255)
                     gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                       <  1:3286771/141‑1 (MQ=255)
                     gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                       >  1:3238505/1‑141 (MQ=255)
                      ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACCACTGGTAAAAATGTACATGTAGGGGCTg                                                                                                                      >  1:584903/1‑141 (MQ=255)
                      ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTg                                                                                                                      >  1:930728/1‑141 (MQ=255)
                         ttattGAAGATGTGTCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACCACTAATAAAAATATACATGTAGGGGCTGgcg                                                                                                                   >  2:3870083/1‑141 (MQ=255)
                         gtattGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCTCAGTCGTTGGCGAAGGTACGCTGGTCGGGATGAATGCTACCATCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcg                                                                                                                   <  1:1043025/140‑1 (MQ=255)
                            ttGTAGATTGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCTAAGGTACCCTGATTGATATGAATGCTACTCTCGGTGGTCCTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                <  1:616294/141‑1 (MQ=255)
                            ttGAATATGGTGCTGTCGTTATGATGGGCGCAACAAGTAATATTGGCGCAGTCGTTGGCGAAGGTACAACGATTGATACACATGCGACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                <  1:1692009/141‑1 (MQ=255)
                            ttGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                >  1:4055887/1‑141 (MQ=255)
                            ttGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                <  1:3819042/141‑1 (MQ=255)
                            ttGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTCCTACAATTGATAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                >  2:562580/1‑141 (MQ=255)
                              ggAAGATGGTGGTGTCGTTATGAGGGGCGCAACGATTAATATTGGCGCAGTAGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGt                                                                                                               <  1:2995486/140‑1 (MQ=255)
                               taaGTTGGTGCTGTTGTTATGATGGGCGCAACAATTTGTATTGGGGCAGTTGTTGGGGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTa                                                                                                              <  2:2403478/140‑1 (MQ=255)
                               gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAATATACATTTAAGGGCTGGCGCAgaa                                                                                                              >  2:2178364/1‑139 (MQ=255)
                               gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGAGAAGGTGCAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTa                                                                                                              >  1:2241335/1‑141 (MQ=255)
                               gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAATCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTATCATTAGTAAAAATGTACATGTATGGGCGGGCGCAGTa                                                                                                              >  2:3169425/1‑141 (MQ=255)
                                 aGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTAtt                                                                                                            <  1:2048222/141‑1 (MQ=255)
                                    tagtgtggTCGTTATAGTGAGTGCGAAAATTAATATTGGCGCAGTCGTTGGCGAAAGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGc                                                                                                         <  2:3567244/134‑1 (MQ=255)
                                     ggTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCa                                                                                                        <  1:74372/141‑1 (MQ=255)
                                      gTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCCGAATTAGCAg                                                                                                       >  1:511029/1‑141 (MQ=255)
                                        gCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACAATTAAAAAAAAAATACATGTAGGGTCTGGCGCAGTATTAGCAggg                                                                                                     >  2:502504/1‑140 (MQ=255)
                                         cTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGGTACAACTGGTAAAAATATACATGTAGGGGCTGGCGCAGTACTAGCAggag                                                                                                    >  2:2561257/1‑139 (MQ=255)
                                          tGTCGTTATGATGGGCGCAACAATTAATATTGGCGCCGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgtgt                                                                                                   >  1:1606082/1‑141 (MQ=255)
                                             tttttggatgAGCGTAACAATTAATTTTGGCGTAGTCGTTGGCGAAGGTACTATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                <  2:215181/135‑1 (MQ=255)
                                             ggtagtgacgGGCGCAACAATTAAGATTGGCGCAGTTGTTGGCGAAGGTACAATGAGTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                <  2:1506791/136‑1 (MQ=255)
                                             ggcattgatgGGCGGGATAGTGAAGAGTGGAGCAGTCGTTGGCGTAGGTGTAATGAGTGATATGAATGCTACTCTCGGGGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                <  2:2864233/136‑1 (MQ=255)
                                             cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                <  1:265262/141‑1 (MQ=255)
                                             cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTACTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                <  1:1524299/141‑1 (MQ=255)
                                             cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCATTAAAAAAAATATACATGCAGGGGCTGGCACTGTCTTAGCAGgtctaat                                                                                                >  2:251301/1‑136 (MQ=255)
                                             cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCCTACCATTAAAAAAAATGAACATGTAGGGGCTGGCGCAGTATTAGCAAGCGTGAt                                                                                                >  2:3425719/1‑141 (MQ=255)
                                             cGTGATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                <  1:2128614/141‑1 (MQ=255)
                                                tATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCGGGATTAGCAGGTGTGATTGa                                                                                             >  1:1759284/1‑141 (MQ=255)
                                                    atgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAccc                                                                                         <  1:2481451/141‑1 (MQ=255)
                                                       ggCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACCATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAGTGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCt                                                                                      >  1:181688/1‑141 (MQ=255)
                                                       ggCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTAATAAAAAAGTACATGTAGGGGCTGGCGCAGTATTATCAGGTGTGATTGAACCCCCt                                                                                      >  2:2610687/1‑141 (MQ=255)
                                                         cgcAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAg                                                                                    <  1:3811841/141‑1 (MQ=255)
                                                         cgcAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCATTGAAAAAAATATACATGTAGGGGCTGGCGCAGTATTAGCAGATGTGATTGAACTCACTAg                                                                                    >  2:2286736/1‑141 (MQ=255)
                                                           caacaaTTAATATTGGCGCAGTCGTTGGCGACGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACGACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTg                                                                                  >  1:2321051/1‑141 (MQ=255)
                                                            aacaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGc                                                                                 >  1:4361051/1‑141 (MQ=255)
                                                            aacaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGc                                                                                 <  1:2730289/141‑1 (MQ=255)
                                                             acaaTTACTATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                <  1:3656971/141‑1 (MQ=255)
                                                             acaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGTTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                <  1:3421807/141‑1 (MQ=255)
                                                             acaaGTAATAGTGGCGCAGTGGTTGGCGAAGGTACAATGATGGATATGAATGCGACTCTCGGTGGTCGTGCTACAACGGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                <  1:1404391/141‑1 (MQ=255)
                                                              caaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCtt                                                                               <  1:3992674/141‑1 (MQ=255)
                                                                 ttAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATGTAGGGGCCAGCGCAGTATAAGTAGGTCTAATTGAAACCCCTAGTACCTCAc                                                                            >  2:2764020/1‑141 (MQ=255)
                                                                   aaTATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTCGTATCATTAATAAAAAAAAACATCTCGACTCTCGCTCACTATTAACACTTGCGATTTAACCCCCTCGCGCTTCACCg                                                                          >  2:1165304/1‑141 (MQ=255)
                                                                     tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                                        <  1:4072883/141‑1 (MQ=255)
                                                                     tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                                        <  1:1258082/141‑1 (MQ=255)
                                                                     tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGATACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                                        <  1:1014618/141‑1 (MQ=255)
                                                                       ttGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTta                                                                      >  1:1369319/1‑141 (MQ=255)
                                                                          gcgcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATaa                                                                   <  1:2554736/141‑1 (MQ=255)
                                                                           cgcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTTCATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAAt                                                                  <  1:837232/141‑1 (MQ=255)
                                                                               gTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGGGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAg                                                              >  1:1212808/1‑141 (MQ=255)
                                                                                 tcttGGAGAAGTTAAAATGATTGATATGAAAGCTATTCTCGGTGGTCGTGCTACAAGTGGAAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAACTCCTAGTGCTTCACCGGTTATAATCGAGga                                                            <  2:4215376/139‑1 (MQ=255)
                                                                                      gCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGatgatg                                                       <  1:2251716/141‑1 (MQ=255)
                                                                                        gAAGGTACAATGATTTATATGAATGCTTCTCTCGGTGGTCTGGATACAATTGAAAAGAAGGTACATGTAGGGGCTGGCGCAGTATTAGAAGGTGTGATTGAAAGCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTa                                                     <  2:4055887/141‑1 (MQ=255)
                                                                                          aGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGGTATCATTAAAAAAAAAATAGATGTAGGGGCTGGAGCAGTATTAGCAGGAGAGATTGAACCCCATAGTGCTTCAACGGTTATAATCGAGGATGAGGTAtt                                                   >  2:1250891/1‑141 (MQ=255)
                                                                                          aGGTACAATGATGGATACGAAGGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGTAGTATTAGCAGGTGTGATTGCAGCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTAtt                                                   <  1:415060/141‑1 (MQ=255)
                                                                                          aGGTACAAGGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTAtt                                                   <  1:4306165/141‑1 (MQ=255)
                                                                                              aCAATGATTGATATGGATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATc                                               <  1:2371019/141‑1 (MQ=255)
                                                                                                aaTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCgg                                             <  1:2935516/141‑1 (MQ=255)
                                                                                                 aggattgatATGAAGGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGt                                            <  1:1321776/139‑1 (MQ=255)
                                                                                                 aTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGt                                            >  1:2185861/1‑141 (MQ=255)
                                                                                                 aTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGt                                            >  1:3446929/1‑141 (MQ=255)
                                                                                                   gattgatATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGc                                          <  1:3138812/141‑1 (MQ=255)
                                                                                                        atatGAATGCTACTCTCGTTGGTCGTGCTACAACTGGGAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATg                                     <  1:3079912/141‑1 (MQ=255)
                                                                                                         tatGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATAAAGGGGCTGGCGCAGTATTAGCAGAAAAGATAGAACCCCCTAATGCTACAACAGTTATAATCGAGGATGATGTATTAATCGACACAAATGc                                    >  2:2038307/1‑141 (MQ=255)
                                                                                                            taattatACTCTCGGTGGTCTGGCTAAGACTTGTAAAAAAGGACATGTAGGGGTTGGCGCAGTATTAGTAGGTGTGATTGATCCCCTTATTGTTTTACCGGTTATAATTGAGGATGATGTATTAATCGGTGCAAATGCAGt                                 <  2:435528/135‑1 (MQ=255)
                                                                                                            gAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGt                                 >  1:3769308/1‑141 (MQ=255)
                                                                                                             aaTGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGtt                                <  1:4266234/141‑1 (MQ=255)
                                                                                                             aaTGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGtt                                >  1:1737488/1‑141 (MQ=255)
                                                                                                               tGCTACTCTCGGTGGTCGGGCTACAACTGGTAAAAATGTACATGTAGGGGTTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAt                              <  2:3619632/141‑1 (MQ=255)
                                                                                                                 ttACTCTGGGCGGTCGTGCAACAAATCTTAAAGGTGTACATGTAGTGGCTGGCGCAGTATTAGCAGGTGTGATTGAAAACTGTAGTGGTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAttt                            <  2:1089959/140‑1 (MQ=255)
                                                                                                                 cTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGGACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAttt                            <  1:2438918/141‑1 (MQ=255)
                                                                                                                        cGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTTGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAgg                     <  1:57432/141‑1 (MQ=255)
                                                                                                                         ggtggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgt                    <  1:889651/141‑1 (MQ=255)
                                                                                                                          gtggtCGTGCTACAACTGGTAAAAATGTACATGTAGTGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtg                   <  1:2675100/141‑1 (MQ=255)
                                                                                                                          gtggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGGTGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtg                   <  1:4207038/141‑1 (MQ=255)
                                                                                                                           tggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt                  >  1:3511365/1‑141 (MQ=255)
                                                                                                                           gggtCGTGCTACAACTAGTAAGAAGGTACATGTAGGGGATGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt                  <  2:3934608/140‑1 (MQ=255)
                                                                                                                            ggtTGTGCTACAACTGGTAAAAATGTGCATGTAGGGGCTGGCGCAGTATTAGCATGTGTGATTGATCCCCCTAGTGGTGCATTTGTGATATTCGAGGAGGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                 <  2:1124798/141‑1 (MQ=255)
                                                                                                                            ggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                 <  1:4044576/141‑1 (MQ=255)
                                                                                                                            ggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAACAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                 >  1:954025/1‑141 (MQ=255)
                                                                                                                            ggtCGTGCTACAACGGGTAAAAATGTAGATGTAGGGGCTGGCGCAGGATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAAGCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                 <  1:251301/141‑1 (MQ=255)
                                                                                                                            gggcGTGGTACAACTGGTAAAAATGTACAGGTAGGGGCTGGCGCAGTATTATCAGGTGTGAGTGAACCCCCTAGTGCTTCACCGGTTATAAGCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                 <  2:732132/138‑1 (MQ=255)
                                                                                                                                gTGATAGAACTAGTAAAAAGGTGGTGGTAGGGGCTGGCGGAGTATTAGGAGGTGTGATTGAACCGCCTAGTGCGTGACCGGTTATAAGGGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACgtg             <  2:23144/141‑1 (MQ=255)
                                                                                                                                    tACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTgg         <  1:4324355/141‑1 (MQ=255)
                                                                                                                                    tACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTgg         <  1:1846644/141‑1 (MQ=255)
                                                                                                                                      cAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTa       <  1:2597840/141‑1 (MQ=255)
                                                                                                                                        tcTGGTAAAAATGTATATGTAGTTGCTGTCGCAGTATGAGCAGGTGTGATTGATCCCCCTAGTGGTTCACTGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTaaa     <  2:3479182/140‑1 (MQ=255)
                                                                                                                                           ggTAAAAAGGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGt  <  1:16289/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
GGTGCGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGT  >  USA300TCH1516_ALE/1434935‑1435213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: