Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000731 | = 6552 | 0 (0.000) | 38 (0.890) +TCTCCAGGCACTTGTGCATATTCTGAAA |
31/212 | 0.3 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
ATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/6421‑6552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCT > CP000731/6553‑6682 |||||||||||||||||||||||||||| ATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCT < 2:81805/135‑1 TTTCAGGTTGTGCTTTGTTCTTCATTCCATATTTTTCTAGATCAAAAATTGATAATACTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTC > 1:55035/1‑135 TTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTACTTGGGGAATAGGAACAATCCACTCTC > 1:94034/1‑135 TCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGTCATTTCTTGGGGAATAGGAACAATCCACTCTCCA < 1:106575/135‑1 AGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAAGAACAATCCACTCTCCAGG > 2:124102/1‑135 GTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCGACTCTCCAGGCACTT > 1:84553/1‑135 TGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATATACATTTCTTTTTGAATAGGAACAATCCACTCTCCAGGCACTTGTGCAT < 1:127484/135‑1 GATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATATACTTTTCTTGGTGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATA < 1:133745/135‑1 TTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCT > 1:128357/1‑135 TCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTG > 2:177891/1‑135 CATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTTTTTTGTTTTAGTAACAATCCACTCTCCAGGCACTTGTGCATATTCTGA < 1:117498/135‑1 TCCATATTTTTCTAGTTCAAAAATTGATAATGCTACCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAA > 1:170911/1‑135 CCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGTCTCTTTAATAGACATTTCTTTGTTAATAGGAACAATCCACTCTCCAGGCACATGTGCATATTCTGAAAAT < 1:41569/135‑1 CATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCCTATTCTGAAAATC > 2:69179/1‑135 CATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTATGCAATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAAACACTTGTGCATATTCCGAAAATC > 2:138383/1‑135 TTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACGATAGACTCTTTAATAGACATTTGTTGTGAAATAGGAACAATCCACTCTCCAGGCACTGGTGCATATACAGAAAATCCACCT > 2:10799/1‑135 GTTCAAAAATTGATAATGCTGCCGTACAACAAGCTGTGCTATATACCATAGACTCTTTAATATACATTTCTTTGTGAATATGTACAATCCATTCTTTAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTG < 1:89983/135‑1 GTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCATTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATCTTCTGAAAATCCACCTTTATGTG > 1:35941/1‑135 tcCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAAGAACAATTCACTCTCCATGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGT < 1:173615/133‑1 AAATTGATAATGCTGCTGTAATACCGGCTGTGCCATATACCATAGACTCTTTAATCGACATGGTCTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGC < 2:131914/135‑1 AATTGATAATGCTGCCGTAAAACCGGCTTTGCCATATTCCATAGACTCTTTAATATACATTTCTTGTGGAATATTAAAAATCAACTATCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCC < 1:89752/135‑1 GATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGATTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACA < 2:55035/135‑1 GATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTACTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACA < 2:94034/135‑1 AATGCTGCCGTAAAACCGGCTGTGCCATTTACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCA < 2:187758/135‑1 AATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCTGGCATTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCA < 1:77165/135‑1 AAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACT < 1:131595/135‑1 GGCTGTGCCATGTACCATACACTCTTTAATAGTCATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTTAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAC < 2:45372/135‑1 GGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACGAATAC < 1:39378/135‑1 TGTGCCATATACCAGAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGGAACTAATACATT < 1:27021/135‑1 acATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTTTATTTGTCACTCCAACATCATAACCAGTAACTAATACATTATCGCC < 1:12859/133‑1 cgATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTT < 1:144961/133‑1 GACTCTTTAATAGACATTTCTTGGAGAATAGGAACAAACAACTCTCCAGGCACTTATGAATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACAAGTAACTAATACATTATCGCCTTCTTTAAAC > 1:88468/1‑135 TCTTTAATAGACATTTCTTGGGGAATAGGAAAAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAATAACTAATACATTATCGCCTTCTTTAAACTTA > 1:7468/1‑135 CTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTGACTAATACATTATCGCCTTCTTTAAACTTAT < 2:128357/135‑1 AATAGACATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATT < 1:177891/135‑1 ATTTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTT < 2:170911/135‑1 TTCTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTATGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGA > 1:209097/1‑135 CTTGGGGAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATAATCGCCTTCTTTAAACTAATCATTCGTACTTGATT > 2:199223/1‑135 gtAATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACA < 2:225247/133‑1 ATAGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATA > 1:19337/1‑135 ATAGGAACAATCCACTCTCAAAGGATTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATA < 2:84553/135‑1 atGAACAATCCACTCTCCAGGCTCTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACC < 2:31062/133‑1 AGGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTAACGCCTTCTTTAAACTTATCATTCCAACTTAATTCAACAATCCC > 1:57501/1‑135 GGAACAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTTTCGCCTTCTTTATTCTTATCATTCGAACTTGATTCAACAATACCT < 1:1043/135‑1 CAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAA > 1:95667/1‑135 CAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAA > 1:78666/1‑135 CAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAGTCAACAATACCTGCAA > 2:10973/1‑135 CAATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTATCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTACACAATACCTGCAA > 1:203858/1‑135 ATCCACTCTCCAGGCACTTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATTCATTATCGCCTTCTTTAAACTTATCATTCGAACTGGATTCAACAATACCTGCAAAA < 1:67812/135‑1 TCCAGGCACTTGTGCATATTCTGCAAATCCACCTGTATGTGTCACACCAACATCATAAACAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCTAACTTGATTCAACAATACCTGCAAAATCTATCCC > 1:183834/1‑135 TTGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATTCATTATCGCCTTCTTTAAACTTATTATTCGAATTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCAT < 1:69179/135‑1 TTGTGCATATGCTGAAAATCCTCCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCTAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCAT < 2:108994/135‑1 TGTGCATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATA < 2:18441/135‑1 CATATTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGAT > 2:181729/1‑135 TTCTGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATC > 2:50974/1‑135 TGAAAATCCACCTGTATGTGTCACGCCAACATCATAACCAGAAACAAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACAAGGAATCATAGGATAATCTCT > 1:65523/1‑135 |||||||||||||||||||||||||||| ATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/6421‑6552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCT > CP000731/6553‑6682 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |