Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | USA300TCH1516_ALE | 733,536 | G→T | S207I (AGT→ATT) | graR_1 → | Response regulator protein GraR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 733,536 | 0 | G | T | 100.0% | 28.0 / NA | 15 | S207I (AGT→ATT) | graR_1 | Response regulator protein GraR |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (13/2); total (13/2) |
CAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTAGTATGGATAGTGCAATCGAAACAAAAGTAGGAAAAGGATATATGGCTCATGAATAATTTGAAATGGGTAGCTTATTTTTTGAAATCTCGCATGAACTGGATATTTTGGATATTGTTTTTAAAC > USA300TCH1516_ALE/733411‑733658 | cAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATGGATAg > 2:161369/1‑135 (MQ=255) aaaaaaTCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACAAAAAAAATTATCTGAAATTATTCTGGAACGTGc > 2:9713/1‑135 (MQ=255) aaaaaaTCAAATCGATTCGAGAGATACAATTATCACTGCATTATGGGATACTGAAGCTTTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAACTATCTGATATTATTATGGATAGTGc > 2:10307/1‑135 (MQ=255) cGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATGGCTAGTGCAATCGACACaaa > 2:120806/1‑135 (MQ=255) cGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATGGATAGTGCAATCGAAACaaa > 2:68197/1‑135 (MQ=255) cGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATAAAGCATTTGTTAGTGATAATACGTTAACAGTAAATTTGAATCGTTTACGAAAAAAAGTATCTGAAATTATTATGGATAGTGCAATCGAAACaaa > 1:210192/1‑135 (MQ=255) gagagaTACAATTATCACTGCATTATTGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGTATTTTTTATTGTTAGTGCAATCGAAACAAAAGTAgg < 1:209978/135‑1 (MQ=255) gagagaTACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATGGCTACTGCAATCGAAACAAAAGTAgg > 2:223969/1‑135 (MQ=255) gaTACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATAGATAGTGCAATCGAAACAAAAGTAGGaaaa > 2:1219/1‑135 (MQ=255) gatgaAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATGGATAGTGCAATCGAAACAAAAGTAGGAAAAGGATATATGGCTCTTGTATACTTTGaa > 2:205220/1‑135 (MQ=255) cAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTATTATGGATAGTACAATCGAAACAAAAGTAGGAAAAGGATATATGGCTCATGAATAATTTGAAATGGGTAGCTTATTTTTTGAAATCTCGCATg > 1:147530/1‑135 (MQ=255) aaaTGTGAATCGTTTACGAAAAAAATTCTCTAAAATAATAATGGTTCCTGCAATCAAAACAAAAGTAGGAAAAGGATATATGGCTCATGAATAATTTGAAATGGGTAGCTTATTTTTTGAAATCTCGCATGAACt < 1:161369/135‑1 (MQ=255) gtgAATCGTTTACGAAAAAAATTATCTGAAATTATTATGAATAGTGCAATCGAAACAAAAGTAGGAAAAGGATATATGGCTCATGAATAATTTGAAATGGGTAGCTTATTTTTTGAAATCTCGCATGAACTGGat > 1:159469/1‑135 (MQ=255) tttACGAAAAAAATTATCTGAAATTATTATGGATAGTGCAATCGAAACAAAAGAAGGAAAAGGATATATGGCTCATGAATAATTTGAAATGGGTACCTTATTTTTTGAAACCTCACATGAAATGTACCTTTTggc > 2:225089/1‑134 (MQ=255) tATCTGAAATTATTATGGATAGTGCAATCGAAACAAAAGCAGGAAAAGGATATATGGCTCATGAATAATTTGAAATCGGAAGCTTATTTTTTGAAATCTCCCATCAACTGGATATCATGGATATTGTTTTTAAAc > 2:99961/1‑135 (MQ=255) | CAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGTTAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTAGTATGGATAGTGCAATCGAAACAAAAGTAGGAAAAGGATATATGGCTCATGAATAATTTGAAATGGGTAGCTTATTTTTTGAAATCTCGCATGAACTGGATATTTTGGATATTGTTTTTAAAC > USA300TCH1516_ALE/733411‑733658 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |