Predicted mutation
evidence seq id position mutation annotation gene description
RA USA300TCH1516_ALE 1,416,458 A→T I216N (ATT→AAT)  oppD_4 ← Oligopeptide transport ATP‑binding protein OppD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,416,4580AT95.2% 50.7 / NA 21I216N (ATT→AAT) oppD_4Oligopeptide transport ATP‑binding protein OppD
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (8/12);  minor base G (0/1);  total (8/13)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAAATGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAC  >  USA300TCH1516_ALE/1416330‑1416588
                                                                                                                                |                                                                                                                                   
aaTCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAAACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACt                                                                                                                               >  1:186484/1‑135 (MQ=255)
    aTAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTAAGTATACGGATGCAAATGCTCATACTTGAAATTATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACa                                                                                                                           >  1:93891/1‑135 (MQ=255)
          aTCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTCTCCTGACACTActt                                                                                                                     >  2:212489/1‑135 (MQ=255)
                        gtgtTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTa                                                                                                      >  1:164518/1‑135 (MQ=255)
                             cTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTATTATATAATTGTACTGATAATATTTCAATACATGACGTAAGTTa                                                                                                 <  1:8307/135‑1 (MQ=255)
                                         aGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAATCATATTTTTTCTGACAATATTTCAATACATGACTTAAGTTATGTGTGataata                                                                                     <  1:23493/135‑1 (MQ=255)
                                         aGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGATAATATTTCAATACATGACTTAAGTTATGTGTGataata                                                                                     <  1:23244/135‑1 (MQ=255)
                                             gTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTTACAATATTTCAATACATGAATTAGGTTGTGTGTGATaataaata                                                                                 <  1:202651/135‑1 (MQ=255)
                                             gTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATaataaata                                                                                 <  1:105756/135‑1 (MQ=255)
                                               tCAGTATACGGTTGCAAATGCTCATACTTGAAATAATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAaataat                                                                               >  1:53817/1‑135 (MQ=255)
                                                                       tACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTATTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAata                                                       >  1:111529/1‑135 (MQ=255)
                                                                                     aaTATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTAATGGACATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATc                                         <  1:213951/135‑1 (MQ=255)
                                                                                          tACCTCGTTGAATTATTTGACCTTCTTTTAAAATATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCa                                    <  2:115794/135‑1 (MQ=255)
                                                                                              tCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTg                                <  2:164518/135‑1 (MQ=255)
                                                                                                 ttCAATGATTTGACCTTCTTTTAAAACATAATTGTACAAACAATATTTAAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGAtt                             >  1:58747/1‑135 (MQ=255)
                                                                                                  tCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATTTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTa                            <  1:210023/135‑1 (MQ=255)
                                                                                                  tCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCATTTGATTa                            <  2:141190/135‑1 (MQ=255)
                                                                                                              ccTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGGTAGGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATCTCCTGTACTCAATCCATAACTTGATTACCGTTCAAAGCa                >  2:53623/1‑135 (MQ=255)
                                                                                                                     ttAAAATGTAAGTGTACTGAACATATTGCAATACATGACTTAGGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGACCAAAACCGTTCATCACTTGATTACCGTTCAAAGCATCCAatg         <  2:45648/135‑1 (MQ=255)
                                                                                                                       gacaCATGATTGTACTGACAATATTTCAATACATGACTTAAGTTGTGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatgat       <  2:170530/132‑1 (MQ=255)
                                                                                                                            aTAATTGTACTGAAATTTTTCTAATACACGACTTTAGTTATTTGTTATAATAAATAATGTTTGACCATGTTCTAATACACTATGCTGTAATAACTCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAc  <  2:15157/135‑1 (MQ=255)
                                                                                                                                |                                                                                                                                   
AATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAAATGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTGATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAAC  >  USA300TCH1516_ALE/1416330‑1416588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: