Predicted mutation
evidence seq id position mutation annotation gene description
RA USA300TCH1516_ALE 1,646,189 G→C A155G (GCA→GGA)  ypdF ← Aminopeptidase YpdF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,646,1890GC100.0% 43.7 / NA 15A155G (GCA→GGA) ypdFAminopeptidase YpdF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (10/5);  total (10/5)

CACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTGCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATG  >  USA300TCH1516_ALE/1646058‑1646318
                                                                                                                                   |                                                                                                                                 
cACTTGCAACACCCTGTGGTAATGCACCTCTATAACCAGATGCTAAAATAGTATCAAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCtt                                                                                                                                >  1:120247/1‑135 (MQ=255)
cACTTGCAACACCATGTGGTAATGCTCCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCtt                                                                                                                                <  1:5260/135‑1 (MQ=255)
         cacCATGTGGTAATGCACCTATATGTCAAGATACTACAAACATATCAAATAATGGTACATCTGCTCCTAATTCTAGAATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAg                                                                                                                       >  1:175340/1‑135 (MQ=255)
                                    cAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAACATTTTGCTATCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATaaa                                                                                            >  1:74149/1‑135 (MQ=255)
                                      gATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATTTGTTTCATcaaca                                                                                          >  2:5948/1‑135 (MQ=255)
                                                tagTATCGAAAGATGGTCCATCTGCTCCGATTTCTAGCATTTTGCTTTTTAATATTGCCTTTAGTTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTTATATGTTTCATCTACAATATTAgctg                                                                                <  2:115337/133‑1 (MQ=255)
                                                    aTCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCttt                                                                            >  1:177571/1‑135 (MQ=255)
                                                                            tAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGTCTCCTTTTACAACAGTTACAAACTAATCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGc                                                    <  2:63969/135‑1 (MQ=255)
                                                                                     cATTTTGCTTTCTGACTGTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTATTTTCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGAc                                           <  1:123599/135‑1 (MQ=255)
                                                                                         ttGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATACATCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGtct                                       >  1:20560/1‑135 (MQ=255)
                                                                                                  aaTATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTa                              >  2:213315/1‑135 (MQ=255)
                                                                                                            ttAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTAt                    <  2:74149/135‑1 (MQ=255)
                                                                                                                      ttCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCt          >  1:22383/1‑135 (MQ=255)
                                                                                                                             aTGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACCTCTCTACTTTTATCTACAGTCTTAGAAACGCTTATTAAt   >  2:148166/1‑135 (MQ=255)
                                                                                                                              tGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATg  >  1:170972/1‑135 (MQ=255)
                                                                                                                                   |                                                                                                                                 
CACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTGCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATG  >  USA300TCH1516_ALE/1646058‑1646318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: