Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1166331 1166471 141 2 [1] [0] 2 [USA300HOU_RS05790] [USA300HOU_RS05790]

TAATTGAATTATGCATTTTCGAAGTAAACATAATTCAACACTTACATTTTTAAATAGATAAAATAGTGTAAAATCACGTGCCAAGATTACTATAGAGTAGGCATTGAGTATTATTGGCAATCACTTAAGTGATTGTTATTTTTCGTGGTCAATAATAAAGATATAAATAAATATATTGAGGTCAAACGATGATAATTAAAATTTTAACAATTCTATTACTACTTTGTATATTGAGCTATTTGGTTACAAATA  >  USA300TCH1516_ALE/1166190‑1166441
                                                                                                                                            |                                                                                                               
tAATTGAATTATGCATTTTCGAAGTAAACATAATTCAACACTTACATTTTTAAATAGATAAAATAGTGTAAAATCACGTGCCAAGATTACTATAGAGTAGGCATTGAGTATTATTGGCAATCACTTAAGTGATTGTTAttt                                                                                                                 <  2:103264/141‑1 (MQ=255)
                                                                                                               tattGGCAATCACTTAAGTGATTGTTATTTTTCGTGGTCAATAATAAAGATATAAATAAATATATTGAGGTCAAACGATGATAATTAAAATTTTAACAATTCTATTACTACTTTGTATATTGAGCTATTTGGTTACAAATa  >  1:117080/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                               
TAATTGAATTATGCATTTTCGAAGTAAACATAATTCAACACTTACATTTTTAAATAGATAAAATAGTGTAAAATCACGTGCCAAGATTACTATAGAGTAGGCATTGAGTATTATTGGCAATCACTTAAGTGATTGTTATTTTTCGTGGTCAATAATAAAGATATAAATAAATATATTGAGGTCAAACGATGATAATTAAAATTTTAACAATTCTATTACTACTTTGTATATTGAGCTATTTGGTTACAAATA  >  USA300TCH1516_ALE/1166190‑1166441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: