Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1248291	1248329	39	2 [1]	[1] 2	smc_2	Chromosome partition protein Smc

ACGCAAGAGGAAGAATATACTTATTTTTTCAATGGCGTCAAACATATTTTGAAAGCTAAAAATAAAGAATTAAAGGGTATTTATGGTGCAGTTGCGGAAATTATTGATGTGCCATCTAAATTAACTCAGGCAATTGAAACAGCATTAGG  >  USA300TCH1516_ALE/1248150‑1248298                                                                                                                                             |         aCGCAAGAGGAAGAATATACTTATTTTTTCAATGGCGTCAAACATATTTTGTATTTTTTATATAAAGAATTAAAGGGTATTTATGGTGCAGTTGCGGAAATTATTGATGTGCCATCTAAATTAACTCAGGCAATTGAAACa          >  2:13315/1‑141 (MQ=255)         ggAAGAATATACTTATTTTTTCAATGGCGTCAAACATATTTTGAAAGCTAAAAATAAAGAATTAAAGGGTATTTATGGTGCAGTTGCGGAAATTATTGATGTGCCATCTAAATTAACTCAGGCAATTGAAACAGCATTAgg  <  2:60079/141‑1 (MQ=255)                                                                                                                                             |         ACGCAAGAGGAAGAATATACTTATTTTTTCAATGGCGTCAAACATATTTTGAAAGCTAAAAATAAAGAATTAAAGGGTATTTATGGTGCAGTTGCGGAAATTATTGATGTGCCATCTAAATTAACTCAGGCAATTGAAACAGCATTAGG  >  USA300TCH1516_ALE/1248150‑1248298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑