Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1320703 1320717 15 2 [1] [0] 2 mutS_1 DNA mismatch repair protein MutS

GCATCACGTGTACTTGAAATTACTTTAACTAAAAGAGATGCTAAAAAAGAAAATCCAATTCCGATGTGTGGTGTTCCGTATCATTCTGCAGATAGTTATATAGATACACTTGTTAATAATGGATATAAAGTAGCTATTTGT  >  USA300TCH1516_ALE/1320718‑1320858
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gCATCACGTGTACTTGAAATTACTTTAACTAAAAGAGATGCTAAAAAAGAAAATCCAATTCCGATGTGTGGTGTTCCGTATCATTCTGCAGATAGTTATATAGATACACTTGTTAATAATGGATATAAAGTAGCTATTtgt  >  1:97016/1‑141 (MQ=255)
gCATCACGTGTACTTGAAATTACTTTAACTAAAAGAGATGCTAAAAAAGAAAATCCAATTCCGATGTGTGGTGTTCCGTATCATTCTGCAGATAGTTATATAGATACACTTGTTAATAATGGATATAAAGTAGCTATTtgt  >  2:50063/1‑141 (MQ=255)
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GCATCACGTGTACTTGAAATTACTTTAACTAAAAGAGATGCTAAAAAAGAAAATCCAATTCCGATGTGTGGTGTTCCGTATCATTCTGCAGATAGTTATATAGATACACTTGTTAATAATGGATATAAAGTAGCTATTTGT  >  USA300TCH1516_ALE/1320718‑1320858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: