Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1337231 1337284 54 2 [1] [1] 2 glnA Glutamine synthetase

CTAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTAT  >  USA300TCH1516_ALE/1337284‑1337425
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cTAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTa   <  2:78275/141‑1 (MQ=255)
 tAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTAt  <  1:75189/141‑1 (MQ=255)
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CTAGTCACCATGAAGTTGCCCCTGGTCAACATGAAATTGACTTTAAATATGCAGATGCTGTTACAGCATGTGATAATATCCAAACATTTAAATTGGTTGTTAAAACAATCGCACGTAAACATAATTTACACGCAACATTTAT  >  USA300TCH1516_ALE/1337284‑1337425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: