Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 252,626 G→C 9.2% E301D (GAG→GAC gfo_2 → Glucose‑‑fructose oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE252,6260GC 9.2% 172.3 / 3.3 59E301D (GAG→GACgfo_2Glucose‑‑fructose oxidoreductase
Reads supporting (aligned to +/- strand):  ref base G (20/33);  new base C (3/3);  total (23/36)
Fisher's exact test for biased strand distribution p-value = 6.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

AAGAAGATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACTTTAAT  >  USA300TCH1516_ALE/252487‑252765
                                                                                                                                           |                                                                                                                                           
aagaagATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGCGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTgag                                                                                                                                             <  1:558912/140‑1 (MQ=255)
aagaagATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTgag                                                                                                                                             >  2:63851/1‑140 (MQ=255)
 agaagaTAAGGTTCACGTTAGGTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTgaga                                                                                                                                            <  1:166010/140‑1 (MQ=255)
         aGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGgcg                                                                                                                                    >  2:671941/1‑140 (MQ=255)
         aGGTCCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGgcg                                                                                                                                    <  1:163466/140‑1 (MQ=255)
           gTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGcgcg                                                                                                                                  <  1:671941/140‑1 (MQ=255)
           gTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGcgcg                                                                                                                                  >  2:758046/1‑140 (MQ=255)
           gTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGcgcg                                                                                                                                  >  2:757736/1‑140 (MQ=255)
            ttCACGTTAGTTTATCAGGACGAGATGGCGGTATCAATGTATTTCCATGTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGt                                                                                                                                 <  2:361810/140‑1 (MQ=255)
               aCGTGAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAGCTATTTTTGAAAGCAAGGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAAc                                                                                                                              <  2:218288/140‑1 (MQ=255)
                cGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAATCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGGGAGACAGGCGCGTCACt                                                                                                                             >  2:181754/1‑140 (MQ=255)
                 gTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACtt                                                                                                                            >  1:449730/1‑140 (MQ=255)
                 gTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACtt                                                                                                                            <  2:393229/140‑1 (MQ=255)
                   tAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAACGCACACGATGATCAGAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACttcg                                                                                                                          >  2:739489/1‑138 (MQ=255)
                   tAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTg                                                                                                                          <  2:736268/140‑1 (MQ=255)
                       ttATGAGGAGAAGATGGCGGTATCAATTTATTTGCATTTGAAATATATGAGCGCGGCGTTGGAACGATTTTTGAAAGGAGAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCaa                                                                                                                      <  2:621005/140‑1 (MQ=255)
                         aTCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATg                                                                                                                    >  1:363467/1‑140 (MQ=255)
                          tCAGGAGAAGATGGCGGTATCAATTTATTGCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGc                                                                                                                   <  1:223035/140‑1 (MQ=255)
                           cgggggaagaTGGCGGTATGAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCg                                                                                                                  <  2:289490/135‑1 (MQ=255)
                           cAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGCGCGTAACTTTGTCAATGCg                                                                                                                  <  1:496397/140‑1 (MQ=255)
                                      ggCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTGTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGAt                                                                                                       <  2:620006/140‑1 (MQ=255)
                                       gcgttctCAATTTAGTGCCTTTTAAAATATATGAGCCCCGCTGTGAAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATATCGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATa                                                                                                      <  2:607227/134‑1 (MQ=255)
                                            aTCAATTTATTTCCATTTGAAATATATGAGGCCCGCTTTGGAACTCGTCTTGAAAGCACAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATagaaga                                                                                                 <  2:229391/140‑1 (MQ=255)
                                            aTCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACGATTTTTGAAGGCACAGGTAATGTTGAGCATAACGAAGACGTTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATagaaga                                                                                                 <  1:174967/140‑1 (MQ=255)
                                            aTCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTGGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGGGTAGGGATagaaga                                                                                                 >  2:182186/1‑140 (MQ=255)
                                                                   atatGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGaagaag                                                                          <  1:720779/140‑1 (MQ=255)
                                                                    tatGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGc                                                                         <  1:597798/140‑1 (MQ=255)
                                                                       gAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGACAATGAGGGATTAGGGAGAGAAGAGAGGGTGGTGAAACCGGAAGCAGCACg                                                                      >  2:441657/1‑140 (MQ=255)
                                                                        aGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGGTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGc                                                                     >  1:744097/1‑140 (MQ=255)
                                                                           cccGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAAt                                                                  <  1:246025/140‑1 (MQ=255)
                                                                           cccGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTCTCTGTCACGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAAt                                                                  <  1:757736/140‑1 (MQ=255)
                                                                           cccGCTTTGGAACTATTTTTGAAAGCAAAGCTAAGGTTGAGCATAACGAAGACATTGCTGGTGACAGAGGGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAAt                                                                  <  1:758046/140‑1 (MQ=255)
                                                                            tcgcgTTGGAACTGTTTTTGAGAGGAAAGCTAGTGTTTAGGATAACGAAGAGATTGCTGGTGAGAGACAGGCGCGTAACGTTGTCAATGGGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATg                                                                 <  2:210944/139‑1 (MQ=255)
                                                                            ccGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATg                                                                 <  1:147891/140‑1 (MQ=255)
                                                                             cGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGt                                                                <  1:63851/140‑1 (MQ=255)
                                                                              gagttGGAACGACTTTGGAGAGCAATGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTATCTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTa                                                               <  1:2658/137‑1 (MQ=255)
                                                                              gCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTACCTTTGTCAATGCGTGTTCAGGGATAGAAGCGATTGTGGTGAAACCGGAAGAAGCACGCACTGTa                                                               >  1:164466/1‑140 (MQ=255)
                                                                               ggttGGAACGATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGGGTTTAGGAATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa                                                              <  1:211155/138‑1 (MQ=255)
                                                                               cTTTGGAAGTATGTTTGAAAGCAAAGGTAATGTTGAGCATAACGAAGACAGTGCTGTTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa                                                              <  2:201370/140‑1 (MQ=255)
                                                                               cTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa                                                              >  2:51628/1‑140 (MQ=255)
                                                                               cTTTGGAACGATTTGTGAAAGCAAAGCTGATGTGGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa                                                              <  2:128946/140‑1 (MQ=255)
                                                                                tttGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaaa                                                             >  1:654355/1‑140 (MQ=255)
                                                                                  tGGAACTATTGTTGAGAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGGGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATg                                                           <  2:314347/140‑1 (MQ=255)
                                                                                     aacgagtttgGAAAGCAAATCTCACGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTGTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGccc                                                        <  2:176603/134‑1 (MQ=255)
                                                                                            tttGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGGTTGTGGTGAAACCGGAACAAGCACGCCATGTAAATTCCCTTAAAGa                                                 >  2:759970/1‑140 (MQ=255)
                                                                                                 aagcaaagcTCATTGTGAGCATAACGACGACATGTCTGGTGAGAGCCAGGCGCGTAACCTTGTCAATGCGTGTTTAGGGACAGAAGAGCTTGTGGTTAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGa                                            <  1:293496/140‑1 (MQ=255)
                                                                                                 aagcaaagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACAGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGa                                            <  1:728885/140‑1 (MQ=255)
                                                                                                   gcaaagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGAtt                                          >  1:614305/1‑140 (MQ=255)
                                                                                                   gcaaagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGAtt                                          >  1:96022/1‑140 (MQ=255)
                                                                                                      aagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTAt                                       >  1:344338/1‑140 (MQ=255)
                                                                                                        gcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCg                                     <  1:425197/140‑1 (MQ=255)
                                                                                                            aTGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGGGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGc                                 >  1:29416/1‑140 (MQ=255)
                                                                                                             tGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCg                                <  1:374207/140‑1 (MQ=255)
                                                                                                              gTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGa                               >  1:295742/1‑140 (MQ=255)
                                                                                                               ttGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTGTAGACGCGATTTATCGTCGCGAt                              >  1:246392/1‑140 (MQ=255)
                                                                                                                  aGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCtt                           <  2:142660/140‑1 (MQ=255)
                                                                                                                           aaGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAag                  >  1:537297/1‑140 (MQ=255)
                                                                                                                                  tGCTGGTGAGAGACCGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATAc           <  1:478850/140‑1 (MQ=255)
                                                                                                                                  tGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATGGTAGCGATCTTGATAAGAAGAGCATAc           >  1:672464/1‑140 (MQ=255)
                                                                                                                                  tGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATAc           >  2:669053/1‑140 (MQ=255)
                                                                                                                                   ggtGGTGAGAGCCTGGCGCGTAACTTGAGCAATGCGTGTTTACGGGTAAAAGAGGATGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTGATAGAAGCTATTTATCGTAGCGATCTTGATAACAAGAGCATACa          <  2:598922/138‑1 (MQ=255)
                                                                                                                                   ggtGGTGAGAGACAGGCGCGTAACTTTGTCAAGGCGTGTTTAGGGATAGATGGTATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACa          <  2:160057/138‑1 (MQ=255)
                                                                                                                                      agttagagaCAGGTGGGTACCTTTGCCCATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACt       <  2:679361/136‑1 (MQ=255)
                                                                                                                                           gagaCAGGCGCTTAACGTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGGAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGAGATCTTGATAAGAAGAGCATACAACTTTAAt  >  1:216670/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                           
AAGAAGATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACTTTAAT  >  USA300TCH1516_ALE/252487‑252765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: