Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 252,626 | G→C | 9.2% | E301D (GAG→GAC) | gfo_2 → | Glucose‑‑fructose oxidoreductase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 252,626 | 0 | G | C | 9.2% | 172.3 / 3.3 | 59 | E301D (GAG→GAC) | gfo_2 | Glucose‑‑fructose oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (20/33); new base C (3/3); total (23/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
AAGAAGATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACTTTAAT > USA300TCH1516_ALE/252487‑252765 | aagaagATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGCGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTgag < 1:558912/140‑1 (MQ=255) aagaagATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTgag > 2:63851/1‑140 (MQ=255) agaagaTAAGGTTCACGTTAGGTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTgaga < 1:166010/140‑1 (MQ=255) aGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGgcg > 2:671941/1‑140 (MQ=255) aGGTCCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGgcg < 1:163466/140‑1 (MQ=255) gTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGcgcg < 1:671941/140‑1 (MQ=255) gTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGcgcg > 2:758046/1‑140 (MQ=255) gTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGcgcg > 2:757736/1‑140 (MQ=255) ttCACGTTAGTTTATCAGGACGAGATGGCGGTATCAATGTATTTCCATGTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGt < 2:361810/140‑1 (MQ=255) aCGTGAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAGCTATTTTTGAAAGCAAGGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAAc < 2:218288/140‑1 (MQ=255) cGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAATCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGGGAGACAGGCGCGTCACt > 2:181754/1‑140 (MQ=255) gTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACtt > 1:449730/1‑140 (MQ=255) gTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACtt < 2:393229/140‑1 (MQ=255) tAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAACGCACACGATGATCAGAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACttcg > 2:739489/1‑138 (MQ=255) tAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTg < 2:736268/140‑1 (MQ=255) ttATGAGGAGAAGATGGCGGTATCAATTTATTTGCATTTGAAATATATGAGCGCGGCGTTGGAACGATTTTTGAAAGGAGAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCaa < 2:621005/140‑1 (MQ=255) aTCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATg > 1:363467/1‑140 (MQ=255) tCAGGAGAAGATGGCGGTATCAATTTATTGCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGc < 1:223035/140‑1 (MQ=255) cgggggaagaTGGCGGTATGAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCg < 2:289490/135‑1 (MQ=255) cAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGCGCGTAACTTTGTCAATGCg < 1:496397/140‑1 (MQ=255) ggCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTGTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGAt < 2:620006/140‑1 (MQ=255) gcgttctCAATTTAGTGCCTTTTAAAATATATGAGCCCCGCTGTGAAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATATCGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATa < 2:607227/134‑1 (MQ=255) aTCAATTTATTTCCATTTGAAATATATGAGGCCCGCTTTGGAACTCGTCTTGAAAGCACAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATagaaga < 2:229391/140‑1 (MQ=255) aTCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACGATTTTTGAAGGCACAGGTAATGTTGAGCATAACGAAGACGTTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATagaaga < 1:174967/140‑1 (MQ=255) aTCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTGGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGGGTAGGGATagaaga > 2:182186/1‑140 (MQ=255) atatGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGaagaag < 1:720779/140‑1 (MQ=255) tatGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGc < 1:597798/140‑1 (MQ=255) gAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGACAATGAGGGATTAGGGAGAGAAGAGAGGGTGGTGAAACCGGAAGCAGCACg > 2:441657/1‑140 (MQ=255) aGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGGTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGc > 1:744097/1‑140 (MQ=255) cccGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAAt < 1:246025/140‑1 (MQ=255) cccGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTCTCTGTCACGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAAt < 1:757736/140‑1 (MQ=255) cccGCTTTGGAACTATTTTTGAAAGCAAAGCTAAGGTTGAGCATAACGAAGACATTGCTGGTGACAGAGGGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAAt < 1:758046/140‑1 (MQ=255) tcgcgTTGGAACTGTTTTTGAGAGGAAAGCTAGTGTTTAGGATAACGAAGAGATTGCTGGTGAGAGACAGGCGCGTAACGTTGTCAATGGGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATg < 2:210944/139‑1 (MQ=255) ccGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATg < 1:147891/140‑1 (MQ=255) cGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGt < 1:63851/140‑1 (MQ=255) gagttGGAACGACTTTGGAGAGCAATGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTATCTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTa < 1:2658/137‑1 (MQ=255) gCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTACCTTTGTCAATGCGTGTTCAGGGATAGAAGCGATTGTGGTGAAACCGGAAGAAGCACGCACTGTa > 1:164466/1‑140 (MQ=255) ggttGGAACGATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGGGTTTAGGAATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa < 1:211155/138‑1 (MQ=255) cTTTGGAAGTATGTTTGAAAGCAAAGGTAATGTTGAGCATAACGAAGACAGTGCTGTTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa < 2:201370/140‑1 (MQ=255) cTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa > 2:51628/1‑140 (MQ=255) cTTTGGAACGATTTGTGAAAGCAAAGCTGATGTGGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaa < 2:128946/140‑1 (MQ=255) tttGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTaaa > 1:654355/1‑140 (MQ=255) tGGAACTATTGTTGAGAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGGGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATg < 2:314347/140‑1 (MQ=255) aacgagtttgGAAAGCAAATCTCACGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTGTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGccc < 2:176603/134‑1 (MQ=255) tttGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGACAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGGTTGTGGTGAAACCGGAACAAGCACGCCATGTAAATTCCCTTAAAGa > 2:759970/1‑140 (MQ=255) aagcaaagcTCATTGTGAGCATAACGACGACATGTCTGGTGAGAGCCAGGCGCGTAACCTTGTCAATGCGTGTTTAGGGACAGAAGAGCTTGTGGTTAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGa < 1:293496/140‑1 (MQ=255) aagcaaagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACAGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGa < 1:728885/140‑1 (MQ=255) gcaaagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGAtt > 1:614305/1‑140 (MQ=255) gcaaagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGAtt > 1:96022/1‑140 (MQ=255) aagcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTAt > 1:344338/1‑140 (MQ=255) gcTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCg < 1:425197/140‑1 (MQ=255) aTGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGGGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGc > 1:29416/1‑140 (MQ=255) tGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCg < 1:374207/140‑1 (MQ=255) gTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGa > 1:295742/1‑140 (MQ=255) ttGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTGTAGACGCGATTTATCGTCGCGAt > 1:246392/1‑140 (MQ=255) aGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCtt < 2:142660/140‑1 (MQ=255) aaGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAag > 1:537297/1‑140 (MQ=255) tGCTGGTGAGAGACCGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATAc < 1:478850/140‑1 (MQ=255) tGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATGGTAGCGATCTTGATAAGAAGAGCATAc > 1:672464/1‑140 (MQ=255) tGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATAc > 2:669053/1‑140 (MQ=255) ggtGGTGAGAGCCTGGCGCGTAACTTGAGCAATGCGTGTTTACGGGTAAAAGAGGATGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTGATAGAAGCTATTTATCGTAGCGATCTTGATAACAAGAGCATACa < 2:598922/138‑1 (MQ=255) ggtGGTGAGAGACAGGCGCGTAACTTTGTCAAGGCGTGTTTAGGGATAGATGGTATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACa < 2:160057/138‑1 (MQ=255) agttagagaCAGGTGGGTACCTTTGCCCATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACt < 2:679361/136‑1 (MQ=255) gagaCAGGCGCTTAACGTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGGAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGAGATCTTGATAAGAAGAGCATACAACTTTAAt > 1:216670/1‑140 (MQ=255) | AAGAAGATAAGGTTCACGTTAGTTTATCAGGAGAAGATGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGCATAACGAAGACATTGCTGGTGAGAGACAGGCGCGTAACTTTGTCAATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAACCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACTTTAAT > USA300TCH1516_ALE/252487‑252765 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |