Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,646,189 G→C 100% A155G (GCA→GGA)  ypdF ← Aminopeptidase YpdF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,646,1890GC100.0% 131.4 / ‑6.5 42A155G (GCA→GGA) ypdFAminopeptidase YpdF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (21/20);  minor base A (1/0);  total (22/20)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTGCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATGAT  >  USA300TCH1516_ALE/1646059‑1646320
                                                                                                                                  |                                                                                                                                    
aCTTGCAACACCATGTGGTAATGCACCTCTATGACTAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTTAGTAATGCCTCCTTGTacaa                                                                                                                             >  1:445364/1‑140 (MQ=255)
aCTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTAACATCGAATCGAATGATGATCCATCGGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCATTCATTCCTCCTTTTacaa                                                                                                                             >  1:178028/1‑140 (MQ=255)
     cAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGtt                                                                                                                        >  2:322609/1‑140 (MQ=255)
        cacCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTaaa                                                                                                                     <  2:36929/140‑1 (MQ=255)
             tgtgGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAACatata                                                                                                                >  2:137820/1‑140 (MQ=255)
              gtgGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAatatat                                                                                                               <  1:514394/140‑1 (MQ=255)
              gtgGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAatatat                                                                                                               >  1:49613/1‑140 (MQ=255)
                     tGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATg                                                                                                        <  1:502401/140‑1 (MQ=255)
                     tGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATg                                                                                                        <  1:442691/140‑1 (MQ=255)
                          ctctATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTtca                                                                                                   >  2:295423/1‑140 (MQ=255)
                                    aGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAatat                                                                                         <  2:749426/140‑1 (MQ=255)
                                         cTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAgct                                                                                    >  1:581700/1‑140 (MQ=255)
                                            cAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAgctgct                                                                                 <  2:46992/140‑1 (MQ=255)
                                               gcGTATCGAATGATGGTCCATCTGCTCCTACTTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCtttt                                                                              <  1:284473/139‑1 (MQ=255)
                                                 gTATCAAATGATGATACATCTGCTCCTAATTCTAGCATTTTACTATCTAATATTACCTATAATTATTTTTAAATCATGCATACTTTTACAAAAGTTAAAATATATTCATATATTTAATCAATAATATTAACTAATTTTTg                                                                            >  2:223587/1‑140 (MQ=255)
                                                     cGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTACAATATATTCATATGTTTCATCAACCATCTTAGCTGCTTTTTGAAtt                                                                        >  1:307781/1‑140 (MQ=255)
                                                     cGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAAtt                                                                        >  2:204940/1‑140 (MQ=255)
                                                        atgatgGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTaaa                                                                     <  1:236236/140‑1 (MQ=255)
                                                         cgatgGTTCGTCTGCTCCTCATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAg                                                                    <  1:671386/139‑1 (MQ=255)
                                                                ccATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTc                                                             >  1:160906/1‑140 (MQ=255)
                                                                ccATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTc                                                             >  1:554009/1‑140 (MQ=255)
                                                                  aTCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCCTTTTTAATTAAAGCAATTTCGt                                                           >  2:679781/1‑140 (MQ=255)
                                                                   tCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTCCACGAGGTAAAATATATTTATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTc                                                          >  1:757755/1‑140 (MQ=255)
                                                                      gCTCCTACTTCTAGCATTTTGGTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTGTTACAACAGTTAAGATATATTCATATGTTTCATCAACAATATGAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGc                                                       <  2:713683/140‑1 (MQ=255)
                                                                               tCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGAc                                             >  1:621180/1‑140 (MQ=255)
                                                                               tCTAGCATTGTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTCTACAACCGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGAc                                             <  1:679603/140‑1 (MQ=255)
                                                                                  aGCATTGTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGtc                                          <  2:685621/140‑1 (MQ=255)
                                                                                        ttGCTTTCTAATATTGCCTTTAATTCTTTTTCTGTCATGCCTCCTTATCCATTATTTATACTATACTATTTTGTTTCATAAATTATATTAGCTGCTTTTTGAATTATAGCTGCTTGTTCATCATCTTTTACGTCTCTAAt                                    <  2:377480/140‑1 (MQ=255)
                                                                                        ttGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAAt                                    <  1:601190/140‑1 (MQ=255)
                                                                                         tGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCACTTTCGTCAGCATCTTTGACGTCTGTAAtt                                   >  2:390043/1‑140 (MQ=255)
                                                                                          gCTTTCTAATATTGCCTTTAATTCTTTTTCTGTCTTGTTTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTATCTTCTTTTTGATTTTAATCAATTTTGTCATCATTTTTTACGTCTCTAtttt                                  >  2:410732/1‑140 (MQ=255)
                                                                                               cTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCt                             >  1:293303/1‑140 (MQ=255)
                                                                                                      tGCCTTTAATTCTTTTTCAGTCATGCCTCCTTGTACAACAGTTAAACTATATTCTTATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTAt                      <  1:104828/140‑1 (MQ=255)
                                                                                                        ccTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTa                    <  1:204940/140‑1 (MQ=255)
                                                                                                        ccTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTa                    <  1:306341/140‑1 (MQ=255)
                                                                                                              aTTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAGGCAATTTCGTGAGCATGTTTGAGGACTGTGATTTTATCTAAGGTAGTAGAAATg              >  1:378987/1‑140 (MQ=255)
                                                                                                              aTTCTTTTTCAGCCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATg              <  1:318942/140‑1 (MQ=255)
                                                                                                                  tttttCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCtta          >  1:158753/1‑140 (MQ=255)
                                                                                                                  tttttCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCtta          >  2:101427/1‑140 (MQ=255)
                                                                                                                  tttttCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATCTTATCTACAGTATTAGAAATGCtta          <  1:295423/140‑1 (MQ=255)
                                                                                                                          tCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATTGACAATATTAGCTGCTTTTTGAATTAAATCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATGat  <  2:337706/140‑1 (MQ=255)
                                                                                                                          tCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGATTCATCTACAATATTAGCTGCTTTTTGACCTAACTCTATTTCGTCACATGAGATAATGTCTCTAATTTTATCTACAGTATTAGAGATGCTTATTAATGat  >  1:678976/1‑140 (MQ=255)
                                                                                                                                  |                                                                                                                                    
ACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTGCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATGAT  >  USA300TCH1516_ALE/1646059‑1646320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: