Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,217,285 T→C 5.3% T97A (ACA→GCA)  ssbA_3 ← Single‑stranded DNA‑binding protein A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,217,2850TC 5.3% 283.7 / 2.5 93T97A (ACA→GCA) ssbA_3Single‑stranded DNA‑binding protein A
Reads supporting (aligned to +/- strand):  ref base T (45/43);  new base C (3/2);  total (48/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01

AATGTATATTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCAAATGCTTT  >  USA300TCH1516_ALE/2217146‑2217423
                                                                                                                                           |                                                                                                                                          
aaTGTATATTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGt                                                                                                                                            >  1:318098/1‑140 (MQ=255)
 aTGTATATTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGtt                                                                                                                                           >  1:677627/1‑140 (MQ=255)
  tctataTTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGttt                                                                                                                                          <  2:491030/138‑1 (MQ=255)
  tGTATATTAAAGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGttt                                                                                                                                          <  2:453246/140‑1 (MQ=255)
    tataTTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCa                                                                                                                                        >  1:411415/1‑140 (MQ=255)
     atatTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCaa                                                                                                                                       >  1:295590/1‑140 (MQ=255)
     atatTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCaa                                                                                                                                       >  2:255196/1‑140 (MQ=255)
       atTAAGGATATTTAGGATAATGGGATGTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACa                                                                                                                                     <  1:85277/140‑1 (MQ=255)
         tAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACata                                                                                                                                   >  1:293254/1‑140 (MQ=255)
         tAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACata                                                                                                                                   <  2:49005/140‑1 (MQ=255)
            ggATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAAATTTATTGTTTCAACATCTaa                                                                                                                                >  2:31235/1‑140 (MQ=255)
            ggATGTTTAGGATAATAGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCAATATTTTGGCATTTAGGGTACATAGATTTTATTGTTTCAACATATaa                                                                                                                                >  2:140249/1‑140 (MQ=255)
                 tttAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGGCATAAATTTTATTGTTTCAACATATAATTCAg                                                                                                                           <  1:644899/140‑1 (MQ=255)
                   tAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGCATTTAGGGGACATAAATTTTATTGTTCCAACATATAATTCAGTg                                                                                                                         >  2:27721/1‑140 (MQ=255)
                    aGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGa                                                                                                                        >  1:91526/1‑140 (MQ=255)
                    aGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATCTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGa                                                                                                                        >  1:140705/1‑140 (MQ=255)
                      gATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACa                                                                                                                      >  1:112441/1‑140 (MQ=255)
                         aaTTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAg                                                                                                                   >  1:701737/1‑140 (MQ=255)
                            tGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGCTTCAACATATAATTCAGTGACAAAgtgt                                                                                                                >  2:182213/1‑140 (MQ=255)
                            tGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGCTTCAACATATAATTCAGTGACAAAgtgt                                                                                                                >  2:658878/1‑140 (MQ=255)
                              gATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAgtgtgt                                                                                                              >  2:658590/1‑140 (MQ=255)
                                tttAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGttt                                                                                                            <  1:468015/140‑1 (MQ=255)
                                tttAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGttt                                                                                                            <  2:528138/140‑1 (MQ=255)
                                 ttAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTg                                                                                                           <  1:434288/140‑1 (MQ=255)
                                 ttAAATTGCTAAGAAGTCATGATTATATATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGAGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTg                                                                                                           <  1:273207/140‑1 (MQ=255)
                                  tAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGt                                                                                                          <  1:367477/140‑1 (MQ=255)
                                  tAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGt                                                                                                          >  1:74088/1‑140 (MQ=255)
                                    aaTTTATAATAAGTCATGATTATCTATATATTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTcc                                                                                                        <  1:433002/140‑1 (MQ=255)
                                      tttCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATCCTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGCCAAAATGTGTTAGtgctt                                                                                                      >  2:129148/1‑136 (MQ=255)
                                        tCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGGCATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCt                                                                                                    <  1:108916/140‑1 (MQ=255)
                                            ataaGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTAt                                                                                                >  2:230008/1‑140 (MQ=255)
                                            ataaGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTAt                                                                                                >  2:283305/1‑140 (MQ=255)
                                            ataaGTCATCATTATCTATATTTTGAGAGTCAATAGCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTAt                                                                                                <  2:507558/140‑1 (MQ=255)
                                             taaGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATc                                                                                               >  1:5134/1‑140 (MQ=255)
                                              aaGTCATGATTATCTATATTTTGAGAGCCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCa                                                                                              <  1:26394/140‑1 (MQ=255)
                                               aGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCAt                                                                                             >  1:459856/1‑140 (MQ=255)
                                                   aTGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTGAGTGACAAAGTGTGTTTGTCCGTGGTTATCAAACtt                                                                                         >  2:733968/1‑140 (MQ=255)
                                                    tGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACttt                                                                                        <  1:167670/140‑1 (MQ=255)
                                                     gATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTc                                                                                       >  2:79440/1‑140 (MQ=255)
                                                      aTTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCt                                                                                      >  1:525543/1‑140 (MQ=255)
                                                      aTTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCt                                                                                      <  1:479938/140‑1 (MQ=255)
                                                      aTTATCTATATTTAGAGAGTCAATATATAAATACTATCTGAGAGAAGTTCATTATTTTGGGATTTAGGGGACATAAATGTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCt                                                                                      <  1:51401/140‑1 (MQ=255)
                                                        tATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTg                                                                                    <  2:176619/140‑1 (MQ=255)
                                                        tATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTg                                                                                    <  2:761272/140‑1 (MQ=255)
                                                          tCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATCAATTACATGACATCAGCTTGTGATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGAt                                                                                  >  1:354845/1‑140 (MQ=255)
                                                          tCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGAt                                                                                  >  2:205553/1‑140 (MQ=255)
                                                           cTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGAtc                                                                                 <  1:291538/140‑1 (MQ=255)
                                                              tatTTTGAGAGTCAATATCTAAATACTATCTGAGATAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTAACATACTTTCTTGATCTCa                                                                              <  1:485987/140‑1 (MQ=255)
                                                              tatTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCa                                                                              <  1:486439/140‑1 (MQ=255)
                                                              tatTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCa                                                                              <  2:295590/140‑1 (MQ=255)
                                                                ttttGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCAtt                                                                            <  1:493754/140‑1 (MQ=255)
                                                                    gagaGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGAc                                                                        <  1:547760/140‑1 (MQ=255)
                                                                     agagACAAGAGCTAAGTACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGAcc                                                                       <  1:115563/140‑1 (MQ=255)
                                                                       agTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAGGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTCACCAg                                                                     >  1:398602/1‑140 (MQ=255)
                                                                       agTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCCTTATCATACTTTCTTGATCTCATTTGACCAg                                                                     >  2:551945/1‑140 (MQ=255)
                                                                           aaTATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTtat                                                                 >  1:711764/1‑140 (MQ=255)
                                                                           aaTATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTCCAACAGACAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTtat                                                                 >  1:759446/1‑140 (MQ=255)
                                                                                 tAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATaccaac                                                           <  2:112441/140‑1 (MQ=255)
                                                                                   aaTACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATACTTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATaccaacca                                                         >  1:105353/1‑140 (MQ=255)
                                                                                     tACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGGGTGTTTGTCCGTCGTTATCATACTTTCTTGATCTCATTTGACCAGTTGTACCAGCCAAt                                                       >  2:13597/1‑140 (MQ=255)
                                                                                        tATCTGAGAGAATTTCATTATTTCGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTa                                                    <  1:631300/140‑1 (MQ=255)
                                                                                          tCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTccc                                                  >  1:399663/1‑140 (MQ=255)
                                                                                          tCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTAcc                                                  >  1:417191/1‑140 (MQ=255)
                                                                                           cTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATCCCAACCACTGTACCt                                                 >  1:711769/1‑140 (MQ=255)
                                                                                            tGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCtt                                                >  1:656130/1‑140 (MQ=255)
                                                                                              agagaATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCCTACTTTCTTGATCTCATTTGACCAGTTATCCCAACCAATGTCCCTTGa                                              >  1:205607/1‑140 (MQ=255)
                                                                                               gagaATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGAt                                             >  1:88219/1‑140 (MQ=255)
                                                                                               gagaATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACAAATGTACCTTGAt                                             >  2:631107/1‑140 (MQ=255)
                                                                                                 gaATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTa                                           >  1:500764/1‑140 (MQ=255)
                                                                                                  aaTTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAg                                          <  1:230008/140‑1 (MQ=255)
                                                                                                  aaTTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGCTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAg                                          <  1:182213/140‑1 (MQ=255)
                                                                                                  aaTTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGCTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAg                                          <  1:658878/140‑1 (MQ=255)
                                                                                                   aTTTCATTATTTTTGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGt                                         <  2:638118/140‑1 (MQ=255)
                                                                                                   aTTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGt                                         >  1:396405/1‑140 (MQ=255)
                                                                                                    tttCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGta                                        <  2:677627/140‑1 (MQ=255)
                                                                                                     ttCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCACTGTACTTTCATTAGtat                                       >  2:60687/1‑140 (MQ=255)
                                                                                                     ttCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGtat                                       >  1:70452/1‑140 (MQ=255)
                                                                                                              ttGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATCAAATGGAAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCta                              <  2:538683/140‑1 (MQ=255)
                                                                                                                gggATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGCTAAGTATCTTTTTCtata                            >  2:175036/1‑140 (MQ=255)
                                                                                                                  gATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATAtt                          >  1:12352/1‑140 (MQ=255)
                                                                                                                  gATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATAtt                          <  1:79440/140‑1 (MQ=255)
                                                                                                                  gATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGATTGTCCGACATTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATAtt                          >  1:273538/1‑140 (MQ=255)
                                                                                                                     ttAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGa                       <  2:360805/140‑1 (MQ=255)
                                                                                                                     ttAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGa                       <  1:73745/140‑1 (MQ=255)
                                                                                                                      tAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTGCCTTGATTAGTATATTTTTCTATATTAGag                      >  1:164195/1‑139 (MQ=255)
                                                                                                                       aGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAg                     <  1:255196/140‑1 (MQ=255)
                                                                                                                         gggACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCt                   <  2:396405/140‑1 (MQ=255)
                                                                                                                                aaaTTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACGAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGc            <  2:91526/140‑1 (MQ=255)
                                                                                                                                aaaTTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGc            <  2:673763/140‑1 (MQ=255)
                                                                                                                                aaaTTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGc            <  2:140705/140‑1 (MQ=255)
                                                                                                                                 aaTTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGcc           >  1:402294/1‑140 (MQ=255)
                                                                                                                                  aTTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCa          <  1:58529/140‑1 (MQ=255)
                                                                                                                                    tttATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCaaa        <  2:206383/140‑1 (MQ=255)
                                                                                                                                     ttATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCAAAt       <  2:74088/140‑1 (MQ=255)
                                                                                                                                        ttGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCAAATGCt    <  2:227213/140‑1 (MQ=255)
                                                                                                                                          gTTTCATCATATAATTCATGGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCAAATGCttt  <  2:419488/140‑1 (MQ=255)
                                                                                                                                          gTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTATGTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCAAATGCttt  >  1:439887/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                          
AATGTATATTAAGGATGTTTAGGATAATTGGATTTAAATTTCTAATAAGTCATGATTATCTATATTTTGAGAGTCAATATCTAAATACTATCTGAGAGAATTTCATTATTTTGGGATTTAGGGGACATAAATTTTATTGTTTCAACATATAATTCAGTGACAAAGTGTGTTTGTCCGTCTTTATCATACTTTCTTGATCTCATTTGACCAGTTATACCAACCAATGTACCTTGATTAGTATATTTTTCTATATTAGAAGCTAACTTGCCAAATGCTTT  >  USA300TCH1516_ALE/2217146‑2217423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: