| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000731 | 15,413 | C→T | 8.8% | D68N (GAC→AAC) | USA300HOU_pUSA300HOUMR0019 ← | strepthothricin acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000731 | 15,413 | 0 | C | T | 8.8% | 382.8 / 16.5 | 140 | D68N (GAC→AAC) | USA300HOU_pUSA300HOUMR0019 | strepthothricin acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (68/58); new base T (6/7); total (74/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 141 total aligned reads displayed.
CCTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATC > CP000731/15274‑15549 | ccTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTCAAGATATATTATCCTATCAGTATTGT‑c > 2:646900/1‑140 (MQ=255) aTGCGTTGCACCCTGAAATCCTTACATACTGCGCTATCTTTTATATAAGCGTCCCGGTTTCAATCTTTTCGCAGTTTAACATTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAat < 2:578896/140‑1 (MQ=255) cTTGCCACCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAatat‑at > 1:295315/1‑140 (MQ=255) cgccTGAAATCCTGACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAg < 2:27827/138‑1 (MQ=255) cccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCCGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAgg > 1:157594/1‑140 (MQ=255) cccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAgg > 1:410966/1‑140 (MQ=255) cccgAAATCCCTACATACGGCGATATCTTCTATTTAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGc < 1:91980/137‑1 (MQ=255) ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGATCCAATTTTTTACCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGTTATATTTTCTTATCAGTATGGT‑CTATAT‑GTTCAAGGc > 2:653997/1‑140 (MQ=255) tGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCaa > 1:253234/1‑140 (MQ=255) aaTCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCt < 1:560758/140‑1 (MQ=255) tCCTTACATATTGTGATATCTTCTATATAAGCGGACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACTCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGc < 2:704007/140‑1 (MQ=255) ccTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAACGCCAttcgcc > 2:13030/1‑135 (MQ=255) tACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGcctcc < 1:582924/140‑1 (MQ=255) attcGGCGATCTTTTGTATATTAGCGCACCGGTTCTAATTTTTTCGCAGTTTAACTTTTCCGTCGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtca < 2:21807/137‑1 (MQ=255) aTACGGCCATATCTTCTATATACGCGTACCCGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtca < 1:64511/140‑1 (MQ=255) tACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcat > 1:743110/1‑140 (MQ=255) aCGGCGGTATCTTCTATTTAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatc < 2:259950/140‑1 (MQ=255) aCGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatc < 1:180524/140‑1 (MQ=255) aCGGCGATATCGTCTATATAAGCGTACCGGTTCAAGGTTTTTCGCAGTTTAGCTTTGCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCGTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatc < 1:123925/140‑1 (MQ=255) atatCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatcctcttc > 1:664059/1‑140 (MQ=255) tctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑TAATAT‑ATTCAAGGCAATCTGCCTCCtcatcctcttcatcgtc > 2:321286/1‑140 (MQ=255) tctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTACCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatcctcttcatcctc < 1:478464/140‑1 (MQ=255) ctATATATGTGTACCGGTTCCTATTGTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatcctcttcatcctct < 1:167689/140‑1 (MQ=255) ctATATAAGCGTCTCGGTCCCACTGTTTTCGCAGTTTAACTCGTCCGACGCGTTTATCGTCTTCGTAGGAAAGATATATTATCTTATCAGGATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCtcatcctcttcatcctct < 1:344461/140‑1 (MQ=255) tatataAGCGTACCGGTTCCAATTTTTGCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTcatcctcttcatcctctt < 1:340897/140‑1 (MQ=255) tacataAGCGTAGCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTcatcctcttcatcctctt < 2:706043/137‑1 (MQ=255) aggCGTGCCTGTTCCAATTGTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCt < 2:135942/138‑1 (MQ=255) aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCATCTTCAGCCTCTTCGTCtt > 1:209251/1‑140 (MQ=255) gCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATCTTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTg > 1:522239/1‑140 (MQ=255) gCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTg > 1:437854/1‑140 (MQ=255) cGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCGCATCCTCTTCATCCTCTTCGTCTTgg > 1:655949/1‑140 (MQ=255) tagcGGTTCCAATGTTTGCTGAGTTTAACTTGTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTa < 2:240553/137‑1 (MQ=255) tACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTa < 1:538638/140‑1 (MQ=255) aCCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCtcagatg > 2:438473/1‑134 (MQ=255) aCCGGTTCCAATTTTTTCGCAGTTTAACGTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAg < 1:557840/140‑1 (MQ=255) ggTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtt > 2:180058/1‑140 (MQ=255) ggTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtt > 1:39633/1‑140 (MQ=255) ggTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCGTATCAGTATTGTACCAT‑T‑CGTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTTTTCGTCTTGGTAGCtt > 1:721709/1‑140 (MQ=255) gTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCCATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCttt > 1:409681/1‑140 (MQ=255) ttCCAATTTTTTCGCAGTTTAACGTTTCCGCCGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTCCATCCTCTTCGTCGTCGTCGCtttc > 2:147129/1‑139 (MQ=255) cAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTaa > 1:429392/1‑140 (MQ=255) aTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATTAGTATTGT‑CAATAT‑CTTCAAGGCAATCTGCCTCCTCATCCTCTTCATACTCCGCGCCCTGGCACCtttttcacc > 2:111024/1‑136 (MQ=255) aTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTACat > 2:562718/1‑140 (MQ=255) aTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCCTGGTAGCTTTTTAAat > 1:670000/1‑140 (MQ=255) ttttttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGT‑AAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAatat < 1:661583/140‑1 (MQ=255) tttttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTCAAGA‑C‑ATATGTTTCTATTCAATCTGCCTCCTCATCCTCTTCATCCTCTTGGTCTTGGTCGCTTTTTAAatat > 1:757195/1‑140 (MQ=255) ttttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATg < 1:712828/140‑1 (MQ=255) ttttCGCAGTTTAACTTTTCCGACGCATCTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCATCCTCATCCTCTTCATCCTCTGCGACGTGGTAGCTTTTTAAATCTg > 2:104906/1‑140 (MQ=255) tttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATgg < 2:410966/140‑1 (MQ=255) ttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgc < 1:122519/140‑1 (MQ=255) tCGCAGTTTAACTTTTCCGACGCATTTATCGTCGTGGTAGTAAGGATATATTATCTTATCAGTCTTGT‑CAATAT‑ATTCAGGGCAATCTGGCTCCTGCTCCTCTTCATCCTCTTAGTCTTGGTTGCTTGTTAAATATGgcg > 1:452540/1‑140 (MQ=255) gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTTGTAGCTTTTTACTTCTGGCGCt > 2:472288/1‑140 (MQ=255) ctgttgcaCTTTTCCGACGCATTTATCGTCTTAGTAGTAAAGATCTTTTAGCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCtt < 2:413385/133‑1 (MQ=255) tttAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCAt < 1:126421/140‑1 (MQ=255) aaCTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATagc > 1:37938/1‑139 (MQ=255) aaCTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATaga < 1:86184/140‑1 (MQ=255) aCTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATagag < 2:284197/140‑1 (MQ=255) tttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTACTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGt < 1:478331/139‑1 (MQ=255) ttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTa < 2:605488/140‑1 (MQ=255) ttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTa > 2:331628/1‑140 (MQ=255) ttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTa > 1:653589/1‑140 (MQ=255) ttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGCCGCTTCCTAGAGTa > 2:187977/1‑140 (MQ=255) ttttCCGACGCATTTATCGTCATGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAAGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTa < 1:385937/140‑1 (MQ=255) gACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTg < 1:739192/140‑1 (MQ=255) gACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGACGTATTCTg > 2:155037/1‑140 (MQ=255) gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTaa < 1:450707/140‑1 (MQ=255) cATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAACTCTGTaaa < 1:341364/140‑1 (MQ=255) ttATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑TAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGt > 2:324859/1‑140 (MQ=255) aTCGTCTTGGTAGTAAAGATATATTATCTTATTAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCGTAGAGTAATTCTGTAAAGGTcc > 1:311977/1‑140 (MQ=255) aTCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTcc > 1:454612/1‑140 (MQ=255) aTCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTCCATAGAGTAATTCTGTACAGGTcc > 2:639534/1‑140 (MQ=255) cGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTGCATTCTCGTCGGCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCaa < 2:542471/140‑1 (MQ=255) tCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTACTTCTGTAAAGGTCAAAtt > 2:446389/1‑140 (MQ=255) tGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATtctc > 1:251260/1‑140 (MQ=255) gtaAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGTTAGCTTTTTAAATATGACTCTTCATATAGTATTTCTTTAAAGTTCCATCTCTCGtctt > 2:118642/1‑140 (MQ=255) gtaAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCCGTAAATGTCCTATTCTCGtttt < 1:525724/140‑1 (MQ=255) aaaGATATATTATCTTATCAGTATTGT‑TAATAT‑ATTCAAGGCAATCTGCCGCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCa < 1:274505/140‑1 (MQ=255) aaaGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGTCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCa < 2:54543/140‑1 (MQ=255) aaaGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCa < 2:429544/140‑1 (MQ=255) atatatTATCTTATCAGTATTGT‑TAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATAcc < 1:58331/140‑1 (MQ=255) tattctCTTATCAGTATTGT‑CAATAT‑ATTCACGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCg < 2:498122/140‑1 (MQ=255) tattatCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATGCTGTAACGGTCCAATTCTCGTTTTCATACCTCg > 2:388627/1‑140 (MQ=255) attatCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTACAGGTCCAATTCTCGTTTTCATACCTCgg > 1:214974/1‑140 (MQ=255) attatCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACGTCgg > 1:70650/1‑140 (MQ=255) attacCTTATCAGTAGTGT‑TAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCgg < 2:731271/140‑1 (MQ=255) atcttatcAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTTATACCTCGGtat > 2:504760/1‑140 (MQ=255) atcttatcAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCCCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGtat < 1:240863/140‑1 (MQ=255) atcttatcAGTATTGG‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTACGTCTTGGTAGCTTTGTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGtat < 2:509784/140‑1 (MQ=255) cttatcAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATATCTCTGtatga > 2:419295/1‑138 (MQ=255) atcAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAACGGTCCAATTCTCGTGTTCATACCTCGGtattctct > 2:212715/1‑135 (MQ=255) tcAGTATTGT‑TAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGTCACTTTATATATTAATTCTGTAAAGGTCCAATACTGTCTTACATACCTTTGTATAATCtt > 2:156492/1‑140 (MQ=255) tcAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCCCTTCTCGTTTTCATACCTCGCTATaagatt > 1:85155/1‑136 (MQ=255) tcAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCtt > 1:414879/1‑140 (MQ=255) cAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCttt > 1:184983/1‑139 (MQ=255) gTATTGT‑TAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGACTTGTTAGCTTTTTAAATATGACGCTTCATAGCGGAAGTCTGTAAAGCTCCAGTACGCGTTTTCATACCTGGGTATGATCTCAcg > 2:49247/1‑139 (MQ=255) gTATTGT‑CCATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGGAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAcc < 2:710296/140‑1 (MQ=255) gTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAcc > 1:643879/1‑140 (MQ=255) tATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCt > 1:593938/1‑140 (MQ=255) aTTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTa < 1:366398/140‑1 (MQ=255) ttGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTAt > 2:512875/1‑140 (MQ=255) | CCTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGT‑CAATAT‑ATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATC > CP000731/15274‑15549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |