| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 512620 = | 26 (1.360) | 10 (0.770) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC |
9/190 | 0.4 | 39.7% | intergenic (+688/‑6075) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 517814 | 19 (0.990) | intergenic (+5882/‑881) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
TTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGC > USA300TCH1516_ALE/517686‑517954 | ttATATTCAGATGTCTGGTGACTATAGCAAGGTGGTCACACCTGTTCCCATGCCGAAGACAGAAGTTAAGCCCCTTAGCGTCGATGGTAGTCGAACTTTCGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcc > 2:109974‑M2/1‑129 (MQ=255) aCATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaa < 1:150548‑M2/141‑15 (MQ=255) cATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATACGAt > 1:96624/1‑141 (MQ=17) tatGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCg > 1:106710/1‑141 (MQ=32) tGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggtta < 1:199342‑M2/141‑24 (MQ=255) gTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCAt < 2:39141/141‑1 (MQ=32) cTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTg > 1:185216/1‑141 (MQ=32) tgtGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaa > 1:68489‑M2/2‑113 (MQ=255) ggTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTgag < 1:62844/141‑1 (MQ=32) tGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGAc > 1:58078/1‑141 (MQ=32) gACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataa > 1:102623‑M2/1‑110 (MQ=255) aacTATAGCAAGGAGGTCACACCTGTTCCCATGCCAAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataa > 2:69914‑M2/2‑110 (MQ=255) aGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaactttggttaaaaaataaaatgga < 2:16773‑M2/141‑38 (MQ=255) aggaggTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTATTCGAACTTACGTTCCGCTAGAGAAGAACGTTGCCAGGCAgttttttaatcaaattttggttcaaaaataaaatggtaaag < 2:21139‑M2/141‑42 (MQ=255) acCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGCCCGCGAGGACCCGCATTGAGTCCGTAAGGTCTCATATTatatc > 2:62840/1‑140 (MQ=11) gCCGAACACAACAATTAAGCTCCGTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGAAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCa < 2:135598/141‑1 (MQ=11) aaCACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgt < 2:158974‑M2/141‑68 (MQ=255) gAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTCGAACGATGCCAGGCAgttttttaatcaaatttcggttgcaaaataagatggacaagataaaaaacgttattgactcatatgttgatca < 2:171198‑M2/141‑74 (MQ=255) aaGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGc > 1:174426/1‑141 (MQ=33) gTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAATAATGGCTGCGATGAGCCGCATTGAGGCCGCAAAGTCTCTTTTTTTATGTCTAGAACGTCAAAATAAGAAGTaa > 2:111831/1‑141 (MQ=11) ccTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataatt > 1:10481‑M2/1‑57 (MQ=255) ccTTAGCGTCGATGGTAGTCGAACTTACGTTACGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataatt > 1:144022‑M2/1‑57 (MQ=255) cTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataatta < 2:129438‑M2/141‑86 (MQ=255) tAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCg < 1:45762/141‑1 (MQ=33) cGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttcatcaaattttggtcaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattactactcgtccctaagaca < 2:148359‑M2/141‑104 (MQ=255) cGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAGAATGGCTTGGCGAAGt < 1:152045/141‑1 (MQ=18) cGAACTTACGTGCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGt < 1:184340/141‑1 (MQ=18) aCGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatttataattaattcttgtcggtaagaaaaatgaac < 1:1383‑M2/141‑111 (MQ=255) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTTAGACCGCAAGGTCTCTTTTTATAAGTCTAAAACGTAAAAATAAAAAGCAAACACAAAAAAAAATTGCATAGTGAAGTAACAACGt > 2:32825/1‑141 (MQ=11) tCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAAGGTTTg > 1:180890/1‑141 (MQ=18) ccGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaacattga > 1:95069‑M2/1‑26 (MQ=255) gCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagctaaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgcacattgcaa < 1:66138‑M2/141‑118 (MQ=255) cTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATc < 1:162039/141‑1 (MQ=33) gagTAGAACGTTGCCAGGCAAAAAATGAATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTATTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACACAGAATACGGTTTTGGCAAATAAAAAACGTTTGAATCtaa > 2:95554/1‑139 (MQ=11) gAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaagattgaaaactgaatta < 2:35011‑M2/141‑127 (MQ=255) gCAGAAAACGGAGTCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTATAAAACGTAAAAATAAAAAGCAAAAACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgc < 2:58606/141‑1 (MQ=11) aaaaaaTGGATGCAATGCAACGAGTTTAGAGCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAgggc < 2:185216/141‑1 (MQ=11) | TTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGC > USA300TCH1516_ALE/517686‑517954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |