New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	895785 =	59 (0.950)	12 (0.220)	10/226	NT	18.7%	coding (806/822 nt)	metQ_2	Methionine‑binding lipoprotein MetQ
	?	USA300TCH1516_ALE	= 909740	53 (0.990)					intergenic (‑663/‑371)	USA300HOU_RS04500/csbD_1	hypothetical protein/Stress response protein CsbD

AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAT  >  USA300TCH1516_ALE/895645‑895924                                                                                                                                             |                                                                                                                                            ggttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                             >  1:650517‑M1/141‑141 (MQ=255) ggttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaat                                                                                                                                             >  1:753244‑M1/141‑141 (MQ=255)   ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatttggctaatta                                                                                                                                           <  2:29869‑M1/3‑1 (MQ=255)   ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatcttgctaattt                                                                                                                                           <  2:360612‑M1/3‑2 (MQ=255)   ttgttttcaagggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcataaataacaatgcatggatttcccttgaacttccttgataatctggataatta                                                                                                                                           <  2:369452‑M1/3‑1 (MQ=255)   gTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTa                                                                                                                                           >  1:126083/1‑141 (MQ=255)    tGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTAt                                                                                                                                          <  1:704168/141‑1 (MQ=255)      cGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTc                                                                                                                                        >  1:85187/1‑141 (MQ=255)        aaaGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCt                                                                                                                                      >  2:651889/1‑141 (MQ=255)         aaGATAATCATTATGCAAACTTAATTGCTGTTAAAGAAGGACATAAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATAATACAGTTATTCATg                                                                                                                                     >  2:646160/1‑141 (MQ=255)          aaaaaaaaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGc                                                                                                                                    >  2:280618‑M1/132‑141 (MQ=255)          aGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTACTCCTGc                                                                                                                                    <  2:67923/141‑1 (MQ=255)           aagtgcaaaaaaagggcataattttgaaacaaagggcattattatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCt                                                                                                                                   >  1:709892‑M1/131‑141 (MQ=255)            aggaaaaaaaaagggaataattgtgaaaaaaagggctaggatatgaataataaattatcttgaaaattttataaatgcatatataagaatgttttgattgctcttgaacttccttgataatctggctaaTTATTCCTGCTa                                                                                                                                  >  2:462048‑M1/130‑141 (MQ=255)             gggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTaa                                                                                                                                 >  1:231557‑M1/129‑141 (MQ=255)              aaTCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTaaa                                                                                                                                <  2:727396/141‑1 (MQ=255)                tCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaata                                                                                                                              >  1:724876/1‑141 (MQ=255)                aaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAaata                                                                                                                              >  2:504969‑M1/126‑141 (MQ=255)                       gCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGTAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCaa                                                                                                                       >  2:337704/1‑141 (MQ=255)                           aCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaa                                                                                                                   >  2:639559/1‑141 (MQ=255)                            cTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaa                                                                                                                  >  1:549786/1‑141 (MQ=255)                             taatattgataaaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATtaaat                                                                                                                 >  2:1848‑M1/113‑141 (MQ=255)                               aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataa                                                                                                               <  1:62809/141‑1 (MQ=255)                                 ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                             >  2:428552/1‑141 (MQ=255)                                 ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGAATTCCATAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATaaaa                                                                                                             >  2:370244/1‑141 (MQ=255)                                 ttGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGACATACAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACTAATTAAATaaaa                                                                                                             >  2:88569/1‑141 (MQ=255)                                      gTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATAcc                                                                                                        >  1:463694/1‑141 (MQ=255)                                      aacaaaggtcaatggtattaataataaattatcttgaaaattttataactgcatatataaccatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATAcc                                                                                                        >  2:541401‑M1/104‑141 (MQ=255)                                      aacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttcctttataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATAcc                                                                                                        >  2:203977‑M1/104‑141 (MQ=255)                                         aaaGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCtt                                                                                                     <  1:504570/141‑1 (MQ=255)                                          aagaagGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCttt                                                                                                    >  1:741683/1‑141 (MQ=255)                                                   aTCAAGAAAATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaac                                                                                           <  2:555505/141‑1 (MQ=255)                                                    tCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACg                                                                                          >  1:460028/1‑141 (MQ=255)                                                     cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGa                                                                                         >  2:173539/1‑141 (MQ=255)                                                      aaGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTACTGCTAAATAATACAAATTAAATAAAAATACCCTTTAATAACAACGAt                                                                                        >  2:358944/1‑141 (MQ=255)                                                        gatgatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGTTTa                                                                                      >  1:451569/1‑141 (MQ=255)                                                         atgatAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTACTAACAACGAtcca                                                                                     >  2:724119/1‑138 (MQ=255)                                                            atAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAggg                                                                                  >  1:190859/1‑141 (MQ=255)                                                            atAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGAAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGCTTAAggg                                                                                  >  2:407207/1‑141 (MQ=255)                                                              aaGAAAATCAAAGCATTAATTGAAGTATTACAATGTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACAAATTAAATAAAAATACCATTTAATAACAAAGATTAAGGGGt                                                                                <  2:361714/141‑1 (MQ=255)                                                              aaGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTACATATGAATACCCTTTAATAACAACGATTAAGGGGt                                                                                <  2:165793/141‑1 (MQ=255)                                                              aaGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                                <  2:14494/141‑1 (MQ=255)                                                               aaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgatcatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAATAATACCCTTTAATAACAACGATTAAGGGGtt                                                                               <  2:319516‑M1/63‑1 (MQ=255)                                                               aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                               <  1:728203/141‑1 (MQ=255)                                                               aGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGtt                                                                               >  1:659266/1‑141 (MQ=255)                                                                gAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                              <  1:331989/141‑1 (MQ=255)                                                                gAAAATCAAAGAATTAATTGAAGTAATACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                              <  2:41474/141‑1 (MQ=255)                                                                aattatcttgacaatattacagaggcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                              >  1:101228‑M1/78‑141 (MQ=255)                                                                  aaaTCAAAGCATTAATAGAAAGATTACAACCTAAAGAAATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtt                                                                            <  1:325384/141‑1 (MQ=255)                                                                   aaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttt                                                                           <  1:477177/141‑1 (MQ=255)                                                                   aaTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttt                                                                           <  1:431692/141‑1 (MQ=255)                                                                    aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtttt                                                                          <  1:78895/141‑1 (MQ=255)                                                                    aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtttt                                                                          >  2:188525/1‑141 (MQ=255)                                                                      cttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAATAATACCCTTTACTAACAACGATTAAGGTGTTatttttt                                                                        <  2:680439‑M1/70‑2 (MQ=255)                                                                        aaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCTTTTAATAACAACGATTAAGGAGTTATTATtgtg                                                                      >  2:181306/1‑141 (MQ=255)                                                                           atttAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATCCCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTa                                                                   <  1:424338/139‑1 (MQ=255)                                                                                     aatgcatatataacaatgttgtgattgcccttgaacttacttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaa                                                         >  2:331641‑M1/57‑141 (MQ=255)                                                                                      gTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaa                                                        <  1:639559/141‑1 (MQ=255)                                                                                      gTATTAAAATCTAAAGATATTCAATACTTCATTAATTAAAAATACAAAGGTGCAGTTATTCCTGCTAAAGAATACAAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaa                                                        <  2:297579/141‑1 (MQ=255)                                                                                            cAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTACGGAGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                                  >  2:30000/1‑141 (MQ=255)                                                                                             aaTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGc                                                 <  1:408789/141‑1 (MQ=255)                                                                                               tCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGTTATTGAAAATAAAAAAGGGcaa                                               >  1:336351/1‑140 (MQ=255)                                                                                               tCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcac                                               >  2:545791/1‑141 (MQ=255)                                                                                                caaaaGATAATCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGcaca                                              <  2:601570/139‑1 (MQ=255)                                                                                                  aaaGATATTTAAGAATTAATTAATGAAAAATAGAATGGTGTAGTTATTCTTGTTAAATAATACTAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaa                                            <  1:399617/141‑1 (MQ=255)                                                                                                   aatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                           >  1:490223‑M1/43‑141 (MQ=255)                                                                                                   aaaataaTCAAGACTTCATTAATGAAAAATACAATAGTGCAGTTATTACTGCTAAATAATACAAATTAAATAAAAATACCCTTTAATAACAACGAATAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                           <  2:213305/138‑1 (MQ=255)                                                                                                    aGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGGGGTATTGAAAATAAAAAAGGGCACAAAAg                                          >  1:523499/1‑141 (MQ=255)                                                                                                    aGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGAGTTATTTTTGTGGTATTGAAAATACAAACGGGCACaaacg                                          >  2:403006/1‑139 (MQ=255)                                                                                                     gATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGAGCACAAAAgg                                         >  2:475276/1‑141 (MQ=255)                                                                                                      atatTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTATTATGGTATTGAAAATAAAAAAGAGCACAAAAgtg                                        >  2:417494/1‑139 (MQ=255)                                                                                                       ttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgggg                                       >  1:645706‑M1/39‑141 (MQ=255)                                                                                                       tatTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgggg                                       <  1:522109/141‑1 (MQ=255)                                                                                                       tatTCAAGACTGTATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgggg                                       <  1:435584/141‑1 (MQ=255)                                                                                                         ttCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCa                                     >  1:98779/1‑141 (MQ=255)                                                                                                           gattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATGAATTGGTTATAATTCTGGTTTTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                                   <  2:369346‑M1/107‑1 (MQ=255)                                                                                                           gattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACAATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAACGAGCAAAAAAGGGGCAGt                                   <  2:23572‑M1/107‑1 (MQ=255)                                                                                                                   cATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaa                           <  1:88467/141‑1 (MQ=255)                                                                                                                    aTTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCaaa                          <  2:549786/141‑1 (MQ=255)                                                                                                                    aTTAATGAAAAATACAATAGCGCAGTTAATATTTTTAAATAATACAAATTAAATAATAATACCCTTTAATAACAACGATTAAGAGGATATTTTTGTGGTATAGAAAAAAAAAAAGTGAACAAAAGGGGCAGTatatcacaa                          >  2:420694/1‑136 (MQ=255)                                                                                                                     ttAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAAt                         >  2:21809/1‑141 (MQ=255)                                                                                                                            cttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGaa                  <  1:257286‑M1/124‑1 (MQ=255)                                                                                                                              aaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATAAAAAGATAATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCACATTATCGAAtt                >  1:29183/1‑141 (MQ=255)                                                                                                                                         gCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGCATTTTTATCcaaaa     >  1:193377/1‑141 (MQ=255)                                                                                                                                         gCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCATTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATAGAAACTAAAAAATTGTTCAAAAGGAGCAGTGGAGGCAAATTATAGAATTTTaaaaacaga     >  1:104696/1‑135 (MQ=255)                                                                                                                                            gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAt  >  2:675605/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            AAGTGCGAAAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAAT  >  USA300TCH1516_ALE/895645‑895924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.