New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 80092849 (0.790)7 (0.120) 7/246 NT 11.9% intergenic (+62/‑289) hisC_1/USA300HOU_RS03915 Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase
?USA300TCH1516_ALE 801948 = 57 (0.970)intergenic (+189/+435) USA300HOU_RS03915/USA300HOU_RS03920 Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase

AAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCA  >  USA300TCH1516_ALE/801810‑802086
                                                                                                                                          |                                                                                                                                          
aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGGAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATa                                                                                                                                          <  1:127794/141‑1 (MQ=255)
   tAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTTGGCCCCAACATAAAg                                                                                                                                       >  2:143469/1‑141 (MQ=255)
    aaTTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGCGGTGGGCCCCAACATAAAGa                                                                                                                                      >  1:204519/1‑141 (MQ=255)
      ttGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGTAAGCTGGGGTGGGCCCCAACATAAAGaaa                                                                                                                                    <  1:396393/141‑1 (MQ=255)
        ttagaattgtgttttaagaataaaatgataaaatgttagaagttttaacaaactttaaatacgaatagtaagtggggagtgggacagaaatgataatttcgcaaaatttatgtcgtcgtcccacccgaacATAAAGAAATa                                                                                                                                  <  2:465858‑M2/11‑1 (MQ=255)
         tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACTCCAATTTCTACAGACAATGCAACCTGAACTGGTCCCCCACATACAGCAATAc                                                                                                                                 >  2:265143/1‑141 (MQ=25)
         tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGAGCCCCAACATACAGaaaaca                                                                                                                                 >  1:405587/1‑138 (MQ=255)
           aCTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAGATACtt                                                                                                                               >  2:207101/1‑141 (MQ=255)
           aCTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGAGCCCCAACATAAAGAAATACtt                                                                                                                               >  2:71289/1‑141 (MQ=255)
             tGAGATGAACTTTTATGTCTTAGAGACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCACCAACATAGAGAAATTGGAACGCCAATTTCTACAGACACTGCAAGTTGGGGAGGGCCCCAACATAAAGAAATACtctt                                                                                                                             >  1:693301/1‑141 (MQ=25)
                  tGAACGTGTGTGTCACAGACACTACAACACTAAACTGGCAGTAGTTGACTGTGGGGCCGCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTAGGCCCGAACATAAAGAAATACTTTTTCttt                                                                                                                        <  2:736945/141‑1 (MQ=18)
                          aacaaaatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTa                                                                                                                <  2:443991‑M2/29‑1 (MQ=255)
                            tggcTTAGACACTAAAATACTATATTGGTAGTAGTTGACTGGGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGt                                                                                                              <  2:679686/138‑1 (MQ=18)
                             gTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTa                                                                                                             <  1:649493/141‑1 (MQ=255)
                                  ggagacTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCt                                                                                                        <  2:610018/137‑1 (MQ=255)
                                    acacTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGTGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTa                                                                                                      <  2:627496/141‑1 (MQ=255)
                                    acacTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTa                                                                                                      <  1:129665/141‑1 (MQ=255)
                                       cTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGc                                                                                                   >  1:436465/1‑141 (MQ=255)
                                       cTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAGTAGTATTTCTTATga                                                                                                   >  1:708066/1‑140 (MQ=255)
                                       cTACAACACTATATTGGCAGAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAAGACTTTTTCTTTAGAAATGATTATTTCTTATGCa                                                                                                  >  1:416208/1‑141 (MQ=255)
                                            tagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAg                                                                                              >  2:742872‑M2/95‑141 (MQ=255)
                                             cacTATCTTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGTAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgt                                                                                             <  2:471100/141‑1 (MQ=255)
                                             cacTATATTGGCAGTAGTTGGCTGCGGCCCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCATTAGAAATTAGTATTTCTTATGCATGAgt                                                                                             <  2:120766/141‑1 (MQ=255)
                                                 atatTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATATCTTATGCATGCGTGTat                                                                                         >  2:753995/1‑140 (MQ=255)
                                                  tatTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGATGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAAc                                                                                        >  2:599233/1‑141 (MQ=255)
                                                    ttGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGTGGTGCGCCACATCACAAGTAAATAGGTTTTCTTTAGAAATTAGTATTTGTTATGCAAGAGTGTaaata                                                                                      >  1:143861/1‑138 (MQ=18)
                                                      ggCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTCTGCATGAGTGTAACTCAt                                                                                    >  2:248171/1‑141 (MQ=255)
                                                         agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTCTTCTTTAGAAATTAGTCTTTCTTATGCATGACTGTACCTCATGCa                                                                                 >  2:99652/1‑141 (MQ=255)
                                                               tGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCATGTTGGGGTGAGCCAAAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTATTATGAATGCGTGTTACTCATGAATTAata                                                                           >  2:697240/1‑141 (MQ=14)
                                                                gACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat                                                                          >  2:369117/1‑141 (MQ=255)
                                                                   tGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCTCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATAtttt                                                                       <  2:457982/141‑1 (MQ=255)
                                                                     cgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTa                                                                     <  2:148438‑M2/72‑1 (MQ=255)
                                                                       gggCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAg                                                                   >  1:113175/1‑141 (MQ=255)
                                                                       gggCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATAAGTGTAACTCATGAATTCATATTTTTaat                                                                   >  2:19060/1‑140 (MQ=255)
                                                                       aatagtaagtggggaggtggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAg                                                                   <  2:126304‑M2/74‑1 (MQ=255)
                                                                            ccAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac                                                              >  1:464385/1‑141 (MQ=255)
                                                                               gtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACAtt                                                           >  1:243378‑M2/60‑141 (MQ=255)
                                                                                  tAGAGAAATGGGAACGGCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGc                                                        <  1:469016/141‑1 (MQ=255)
                                                                                    gagaAAGTGGAAAGACAATTACTATAGACAATGCAAGTTGGGGTGGGCCGCAACATAAAGAAATATTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtg                                                      <  2:65864/141‑1 (MQ=18)
                                                                                     agaAATTGGAACGCCAATTTTTACAGACAATGCAAGTTGGTGTGGTCCTCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgt                                                     <  2:27013/141‑1 (MQ=255)
                                                                                     agaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATAAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgt                                                     >  1:195210/1‑141 (MQ=255)
                                                                                       aaaTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGa                                                   >  1:723724/1‑141 (MQ=255)
                                                                                         aTTGGAACGCTAATTTCTATAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACt                                                 <  1:40618/141‑1 (MQ=255)
                                                                                             gcgttccAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTATTTCTTTAGAAATTAGTATTTCTTATGCATTAGGGTAACTCATACATTCATATTTTTAAGTACACATTAGCTGTGACTAAta                                             >  2:453239/6‑140 (MQ=18)
                                                                                             gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAta                                             >  1:226417/1‑140 (MQ=255)
                                                                                             gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATg                                             >  1:610931/1‑141 (MQ=255)
                                                                                               aCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGAt                                           >  1:491010/1‑141 (MQ=255)
                                                                                                ctccAATTTCTACAGAGAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTGATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATa                                          <  1:694374/139‑1 (MQ=255)
                                                                                                cggcAATTTCTAGAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATa                                          <  2:486814/138‑1 (MQ=255)
                                                                                                cGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATa                                          <  1:37557/141‑1 (MQ=255)
                                                                                                cGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCAAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTCTTAAGTACACATTAGCTGTGACTAATGATa                                          <  2:254743/141‑1 (MQ=255)
                                                                                                 gCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaa                                         >  2:111241/1‑141 (MQ=255)
                                                                                                         cTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGc                                 <  1:341907/141‑1 (MQ=255)
                                                                                                          tACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATAGCt                                >  2:706111/1‑141 (MQ=255)
                                                                                                          tACAGACAATGCAAGTTGGGGTGGGCCACAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAACTGCACATTACCCGTGACTACTGATAAAGAAtgcat                                >  2:43289/1‑137 (MQ=18)
                                                                                                               aaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACatc                           >  2:600720‑M2/28‑140 (MQ=255)
                                                                                                                    gCAAGTTGGGGTGGGCCCGAACAAAAAGGAATACTTGTGCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatcaa                      >  1:558527/1‑141 (MQ=21)
                                                                                                                    gCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatcaa                      >  1:489312/1‑141 (MQ=255)
                                                                                                                         ttGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTGAGTACACATGAGCTGTGACTAATGATAAAGAGTCGCTACATAATCAATCAtt                 <  1:342761/141‑1 (MQ=255)
                                                                                                                           ggggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAg               <  2:485145/141‑1 (MQ=255)
                                                                                                                           ggggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAg               >  1:611423/1‑141 (MQ=255)
                                                                                                                            gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGt              >  1:662437/1‑141 (MQ=255)
                                                                                                                            gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGt              <  1:362855/141‑1 (MQ=255)
                                                                                                                             ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTc             >  2:668567/1‑141 (MQ=255)
                                                                                                                             ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCAGTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTc             >  2:667079/1‑141 (MQ=255)
                                                                                                                              gTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCg            <  1:165695/141‑1 (MQ=255)
                                                                                                                               ggggCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt           <  2:195367/140‑1 (MQ=255)
                                                                                                                                 ggCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTc         >  1:363166/1‑141 (MQ=255)
                                                                                                                                  gCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCt        <  1:599233/141‑1 (MQ=255)
                                                                                                                                        acATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCa  <  1:386875‑M2/139‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                          
AAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCA  >  USA300TCH1516_ALE/801810‑802086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.