Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP000731 | 15,413 | C→T | 7.3% | D68N (GAC→AAC) | USA300HOU_pUSA300HOUMR0019 ← | strepthothricin acetyltransferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP000731 | 15,413 | 0 | C | T | 7.3% | 402.2 / 15.8 | 153 | D68N (GAC→AAC) | USA300HOU_pUSA300HOUMR0019 | strepthothricin acetyltransferase |
Reads supporting (aligned to +/- strand): ref base C (81/57); new base T (6/6); total (88/65) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.60e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.40e-01 |
Only 100 of 153 total aligned reads displayed.
CTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCACC > CP000731/15275‑15552 | cTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCaa > 1:235904/1‑141 (MQ=255) cTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGCCTTGGTAGTAAAGATATATTCTCTTATCAGTATTGTCaa > 1:334452/1‑141 (MQ=255) aTGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTAGCGGTTCCAATTGTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTACCGTCTCGCTCGTCACGATATGTGATTTTCTCAGTATAGTCAata > 1:497283/1‑141 (MQ=255) tGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCACTTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGATAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCa > 1:184286/1‑141 (MQ=255) gCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGTGTACCGGCCCCAATTATATACATCAATT‑‑GCTGGTCCGACGCATTTATCGTCTTGGTAGTAAAGATATCTTATCTTTTCCGTTTTGTCCATA‑TATTCaa > 1:554878/1‑141 (MQ=255) gCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCaa > 2:386857/1‑141 (MQ=255) ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACGGGTTCCAGTTTTTT‑C‑GCACTCTAACTATTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTCTCAGTATTGGCAATG‑TATTCAAGGCa > 1:252382/1‑141 (MQ=255) ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAAGCa > 2:229959/1‑141 (MQ=255) tGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCACGGCAAt > 1:397257/1‑141 (MQ=255) aTCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGc > 1:754313/1‑141 (MQ=255) tCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGcc > 2:706248/1‑141 (MQ=255) cTTACATACGGCGATATCTTTTATATAAGCGTACCGGTTCCAAGTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGcctc < 2:178479/141‑1 (MQ=255) cTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGcctc > 2:365795/1‑141 (MQ=255) cATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtca < 2:325621/141‑1 (MQ=255) tACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACTCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGGCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatc < 2:615766/141‑1 (MQ=255) gCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTTCtcatcct‑ct > 1:142766/1‑141 (MQ=255) gCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTCTCAATA‑TATTCAAGGCAATT‑TGACTTCtcatcct‑ct > 2:296603/1‑141 (MQ=255) atatCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCACGGCAAGC‑TGCCTCCtcatcct‑cttcc > 1:625549/1‑140 (MQ=255) tatCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcat > 1:686149/1‑141 (MQ=255) atCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCCAGGCAATC‑TGAATCCtcatact‑cttcatc > 1:529354/1‑141 (MQ=255) atCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatc < 1:113612/141‑1 (MQ=255) tcttttATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTCACTTTCCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatcc < 2:729575/141‑1 (MQ=255) tcttctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGTTAGTAAAGATATATTACACTACTAGTATTGTCAATA‑TATTCACGGCAATC‑TGCCTCCtcatcct‑cttcatcc > 2:341643/1‑141 (MQ=255) tcttctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatcc < 1:149431/141‑1 (MQ=255) tcgtttatataAACGTACCGGTTTCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatcc < 2:524851/136‑1 (MQ=255) cttctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcctcct > 2:14967/1‑141 (MQ=255) cttctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑GATTCAAGGCCATC‑TGCCTCCtcatcgt‑cttcatccc > 1:315295/1‑140 (MQ=255) cttctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGCCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGTAATC‑TGCATCCtcatcct‑cttcatcct > 2:154554/1‑141 (MQ=255) ttctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatcctc < 1:212523/141‑1 (MQ=255) tctATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTCTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatcctct < 1:576564/141‑1 (MQ=255) tctATATAAGCGTACCGGGTCCAATTTTTT‑C‑GCAGTTTAACCTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCtcatcct‑cttcatcctct < 1:284057/141‑1 (MQ=255) aGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTg < 2:179361/141‑1 (MQ=255) aGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTg > 1:367765/1‑141 (MQ=255) aGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTGCATCCTCTTCCTCTTg > 1:656281/1‑141 (MQ=255) aGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCACGATAGACAAAA‑AGTTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTg > 1:430162/1‑141 (MQ=255) gCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTgg < 2:192169/141‑1 (MQ=255) tgTACCGGTTTCTATTTTTT‑C‑GTTGTGTAACTTTTCCGATGTATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGTAATC‑TGCCTTCTCATCCT‑CTTCATCCTCTTCGTCTTGGt < 2:669020/140‑1 (MQ=255) cGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTCTCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCCTCCT‑CTTCATCCTCTCCGTCTGGGt > 2:609632/1‑141 (MQ=255) cGTACCGGGTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGt < 2:581969/141‑1 (MQ=255) ggaCCGGTTCCACTTTTGT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTa < 1:228094/139‑1 (MQ=255) ggctgtaaTTTTTT‑C‑GCAGTTTATCTTTTCCGACGCATTTATCGTCTTGGTAGTAAATATATATTATCTTTTGGAGATGGTCAATA‑TATTCAATTCAATC‑TTCCTCTTCTTCCT‑CGTCATCCGCTTCGTCTTGGTAGCttt < 2:567377/135‑1 (MQ=255) gtcccAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCtttt < 1:689509/138‑1 (MQ=255) gTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCtttt > 1:328389/1‑141 (MQ=255) gTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGATAGCtttt > 1:624326/1‑141 (MQ=255) gTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTCATCGTCTGGGTCGTAAAGATATATTATCTTATCGGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCtttt > 1:200218/1‑141 (MQ=255) gTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCAGTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTTGTAGCttct > 2:312733/1‑139 (MQ=255) ttCCACTTTTTG‑C‑GCAGTTTAACTTTTCTGACGCATTTATCGTCTTTGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCttttt < 2:169842/141‑1 (MQ=255) tCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCTTTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCCACATCTTCGTCTTGGTAGCTTTTTa < 2:275429/141‑1 (MQ=255) aaTTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAGat > 1:601870/1‑141 (MQ=255) aTTTTTT‑C‑GCATTTTAACTTTTCCGACTCATTTATCGTCTTTGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAata < 2:60394/141‑1 (MQ=255) aTTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGCCTAGGTAGCTTTTTAAatt > 2:643259/1‑140 (MQ=255) ttttt‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCAACGACTTAGTGGCttgttcactctg > 1:281953/1‑134 (MQ=255) tt‑C‑GCAGTTTAAGTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGCTATGTTGTCTTATCAGTCTTATCCGGG‑TAGTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcg < 2:7720/141‑1 (MQ=255) tt‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcg > 1:562147/1‑141 (MQ=255) t‑C‑GCAGTTTAACTTTTCCGACGCATTTCTCGTCTTTGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcgc < 2:108892/141‑1 (MQ=255) gtaGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCTTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCtt > 2:741596/3‑141 (MQ=255) gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCtt > 1:112848/1‑141 (MQ=255) gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTTTTGGTAGCTTTTTAAATATGGCGCtt > 1:739197/1‑141 (MQ=255) gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTACCTTTTTACATATGTCCCtt > 2:437527/1‑141 (MQ=255) ttAACTTTTCCGACGCATTTATCGTCTTGGTAGTATAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCATCTTCGTCTTTGTACCTTTTTAAATATTTCGCTTCATaa > 2:130445/1‑140 (MQ=255) ttttttgACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTGCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTaa < 2:202894/135‑1 (MQ=255) ttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCATCTTCGTCTTGGTAGCTTTTTAAATATGCCGCTTCGTATAGCaa > 2:551551/1‑141 (MQ=255) tttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAAt < 2:93092/141‑1 (MQ=255) tttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTCCATAGAGTAAt > 1:315783/1‑141 (MQ=255) ccGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCt < 1:80306/141‑1 (MQ=255) gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTCGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTtaa > 2:584219/1‑141 (MQ=255) gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTATGTcaa > 2:113360/1‑141 (MQ=255) cagcgacTTAGTAGTAAAGATAGATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTcc < 1:169204/135‑1 (MQ=255) aTCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCa < 1:167888/141‑1 (MQ=255) aTCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAAGGTAATTATGTaatgttgca > 1:439559/1‑134 (MQ=255) tCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTTTGTAAAGGTCCaa > 1:395679/1‑141 (MQ=255) gTCTTGGTAGTAAAGATATATTGCATCAACGGTAGTGGCAATA‑TATTCAAGGCAATC‑TGCCACGTCGTCCT‑TTTCATCGTCTTCTGCGTGGTAACTTTTTACATATGGCACTTCATGGAGGAAGTCTCTCAAGGTCCacgc > 2:376928/1‑138 (MQ=255) cTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATtct > 1:25164/1‑141 (MQ=255) cTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAAGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTCTTAACTATCGCGCTTCATCGAGTAACTCTGTAAACGTCCCATtct > 2:343887/1‑141 (MQ=255) ttGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTAGTAGCTTTTTAAATATGTCGCTTCATACCGTACTTCTGTCAAGGTCCAATtctc > 2:248530/1‑141 (MQ=255) tGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCCCCCC‑CCACATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCg < 1:748407/141‑1 (MQ=255) tagtaAAGATATATTATCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGttt > 1:98527/1‑141 (MQ=255) tagtaAAGATATATTATCTTATCAGTACGGAGTATATTATTC‑‑CGCAAACAAACCTCCTCTTCCT‑CTTCATCCTCATCTTATTAGAAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCtttt < 1:351698/141‑1 (MQ=255) gtaAAGATATATTGTCTTATCGGTATGGTTAATC‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCGCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATACTGTAATTCTGTAGAGGTCCAATTCTCGTTTTc < 2:665216/141‑1 (MQ=255) gtaAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGCCGCTTCATAGATTACTTCTGTAAAGGTCCAATTCTCATTTTc > 2:475975/1‑141 (MQ=255) taAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCa < 1:61401/141‑1 (MQ=255) taAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTGCATCCTCTTCGTCTTGGTAGCTTTTTAAATATTGCGCTTCATACAGTAATTCTGTAAATTTCCAATTTTCGTTTTct > 2:461621/1‑140 (MQ=255) attgattatCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCt < 2:385204/137‑1 (MQ=255) atatatTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATTGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCt < 2:432849/141‑1 (MQ=255) tatatTATCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTc < 1:367326/141‑1 (MQ=255) tagtatattatcAGTAGTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCAGCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCgg < 2:12119/138‑1 (MQ=255) attatCTTATCAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGt < 1:640448/141‑1 (MQ=255) attatCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGt > 1:658956/1‑141 (MQ=255) attatCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTAATCTT‑CTTCATCCTCTTCGTCTTGGTAGAGATTTAAGTATGGTAAGCCGGATACGAATTCTGTAAATGTCCAATTCTCGTTTTCATACCTCGGt < 2:163450/141‑1 (MQ=255) ttatcttatcAGTATTGTTAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGta < 2:112848/141‑1 (MQ=255) ttatcttatcAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGta < 1:531729/141‑1 (MQ=255) tgatcAGTATTGTCAATA‑TATTGAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATc < 2:289913/139‑1 (MQ=255) aGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAcc < 1:212466/141‑1 (MQ=255) gTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGCGTCATTCTGTAAAGCTCCAATTCTCGTTTTCATCCCTCTCTCTACTCTTTCCt > 2:655632/1‑141 (MQ=255) gTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAACt > 1:440878/1‑141 (MQ=255) aTTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGCCCAATTCTCGTTTTCCTCCCTCGGTATAATCTTACTTAt > 1:641614/1‑141 (MQ=255) tGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCCATTCTCGTTTTCATACCTCGGTATAATCTTACATATCa > 1:30329/1‑141 (MQ=255) gTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTACCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGATCCAATTCTCGTTTTCATACATCGGTATAATCTTACCTATCAc > 2:614010/1‑141 (MQ=255) tCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCAcc > 1:96374/1‑141 (MQ=255) tCAATA‑TATTCAAGGCAATC‑TGCCTCC‑AACCGTGCGTCATCTGTTTCTTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATAAcc > 1:326910/1‑141 (MQ=255) | CTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTT‑C‑GCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATA‑TATTCAAGGCAATC‑TGCCTCCTCATCCT‑CTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCACC > CP000731/15275‑15552 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |