Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000731 15,413 C→T 7.3% D68N (GAC→AAC)  USA300HOU_pUSA300HOUMR0019 ← strepthothricin acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073115,4130CT 7.3% 402.2 / 15.8 153D68N (GAC→AAC) USA300HOU_pUSA300HOUMR0019strepthothricin acetyltransferase
Reads supporting (aligned to +/- strand):  ref base C (81/57);  new base T (6/6);  total (88/65)
Fisher's exact test for biased strand distribution p-value = 5.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.40e-01

Only 100 of 153 total aligned reads displayed.

CTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCACC  >  CP000731/15275‑15552
                                                                                                                                            |                                                                                                                                              
cTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCaa                                                                                                                                              >  1:235904/1‑141 (MQ=255)
cTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGCCTTGGTAGTAAAGATATATTCTCTTATCAGTATTGTCaa                                                                                                                                              >  1:334452/1‑141 (MQ=255)
  aTGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTAGCGGTTCCAATTGTTTCGCAGTTTAACTTTTCCGACGCATTTACCGTCTCGCTCGTCACGATATGTGATTTTCTCAGTATAGTCAata                                                                                                                                            >  1:497283/1‑141 (MQ=255)
        tGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCACTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGATAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCa                                                                                                                                     >  1:184286/1‑141 (MQ=255)
         gCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGTGTACCGGCCCCAATTATATACATCAATT‑‑GCTGGTCCGACGCATTTATCGTCTTGGTAGTAAAGATATCTTATCTTTTCCGTTTTGTCCATATATTCaa                                                                                                                                    >  1:554878/1‑141 (MQ=255)
         gCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCaa                                                                                                                                    >  2:386857/1‑141 (MQ=255)
             ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACGGGTTCCAGTTTTTTCGCACTCTAACTATTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTCTCAGTATTGGCAATGTATTCAAGGCa                                                                                                                                >  1:252382/1‑141 (MQ=255)
             ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAAGCa                                                                                                                                >  2:229959/1‑141 (MQ=255)
               tGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCACGGCAAt                                                                                                                              >  1:397257/1‑141 (MQ=255)
                   aTCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGc                                                                                                                         >  1:754313/1‑141 (MQ=255)
                    tCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGcc                                                                                                                        >  2:706248/1‑141 (MQ=255)
                      cTTACATACGGCGATATCTTTTATATAAGCGTACCGGTTCCAAGTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGcctc                                                                                                                      <  2:178479/141‑1 (MQ=255)
                      cTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGcctc                                                                                                                      >  2:365795/1‑141 (MQ=255)
                          cATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtca                                                                                                                  <  2:325621/141‑1 (MQ=255)
                            tACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACTCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGGCAATATATTCAAGGCAATCTGCCTCCtcatc                                                                                                                <  2:615766/141‑1 (MQ=255)
                                gCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTTCtcatcctct                                                                                                           >  1:142766/1‑141 (MQ=255)
                                gCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTCTCAATATATTCAAGGCAATTTGACTTCtcatcctct                                                                                                           >  2:296603/1‑141 (MQ=255)
                                   atatCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCACGGCAAGCTGCCTCCtcatcctcttcc                                                                                                        >  1:625549/1‑140 (MQ=255)
                                    tatCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcat                                                                                                       >  1:686149/1‑141 (MQ=255)
                                     atCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCCAGGCAATCTGAATCCtcatactcttcatc                                                                                                      >  1:529354/1‑141 (MQ=255)
                                     atCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatc                                                                                                      <  1:113612/141‑1 (MQ=255)
                                      tcttttATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTCACTTTCCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcc                                                                                                     <  2:729575/141‑1 (MQ=255)
                                      tcttctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGTTAGTAAAGATATATTACACTACTAGTATTGTCAATATATTCACGGCAATCTGCCTCCtcatcctcttcatcc                                                                                                     >  2:341643/1‑141 (MQ=255)
                                      tcttctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcc                                                                                                     <  1:149431/141‑1 (MQ=255)
                                      tcgtttatataAACGTACCGGTTTCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcc                                                                                                     <  2:524851/136‑1 (MQ=255)
                                       cttctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcctcct                                                                                                    >  2:14967/1‑141 (MQ=255)
                                       cttctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATAGATTCAAGGCCATCTGCCTCCtcatcgtcttcatccc                                                                                                    >  1:315295/1‑140 (MQ=255)
                                       cttctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGCCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGTAATCTGCATCCtcatcctcttcatcct                                                                                                    >  2:154554/1‑141 (MQ=255)
                                        ttctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcctc                                                                                                   <  1:212523/141‑1 (MQ=255)
                                         tctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTCTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcctct                                                                                                  <  1:576564/141‑1 (MQ=255)
                                         tctATATAAGCGTACCGGGTCCAATTTTTTCGCAGTTTAACCTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcctct                                                                                                  <  1:284057/141‑1 (MQ=255)
                                                 aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTg                                                                                          <  2:179361/141‑1 (MQ=255)
                                                 aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTg                                                                                          >  1:367765/1‑141 (MQ=255)
                                                 aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTGCATCCTCTTCCTCTTg                                                                                          >  1:656281/1‑141 (MQ=255)
                                                 aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCACGATAGACAAAAAGTTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTg                                                                                          >  1:430162/1‑141 (MQ=255)
                                                  gCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTgg                                                                                         <  2:192169/141‑1 (MQ=255)
                                                   tgTACCGGTTTCTATTTTTTCGTTGTGTAACTTTTCCGATGTATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGTAATCTGCCTTCTCATCCTCTTCATCCTCTTCGTCTTGGt                                                                                        <  2:669020/140‑1 (MQ=255)
                                                   cGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTCTCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCCTCCTCTTCATCCTCTCCGTCTGGGt                                                                                        >  2:609632/1‑141 (MQ=255)
                                                   cGTACCGGGTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGt                                                                                        <  2:581969/141‑1 (MQ=255)
                                                    ggaCCGGTTCCACTTTTGTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTa                                                                                       <  1:228094/139‑1 (MQ=255)
                                                         ggctgtaaTTTTTTCGCAGTTTATCTTTTCCGACGCATTTATCGTCTTGGTAGTAAATATATATTATCTTTTGGAGATGGTCAATATATTCAATTCAATCTTCCTCTTCTTCCTCGTCATCCGCTTCGTCTTGGTAGCttt                                                                                  <  2:567377/135‑1 (MQ=255)
                                                          gtcccAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtttt                                                                                 <  1:689509/138‑1 (MQ=255)
                                                          gTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtttt                                                                                 >  1:328389/1‑141 (MQ=255)
                                                          gTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGATAGCtttt                                                                                 >  1:624326/1‑141 (MQ=255)
                                                          gTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTCATCGTCTGGGTCGTAAAGATATATTATCTTATCGGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtttt                                                                                 >  1:200218/1‑141 (MQ=255)
                                                          gTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCAGTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTTGTAGCttct                                                                                 >  2:312733/1‑139 (MQ=255)
                                                           ttCCACTTTTTGCGCAGTTTAACTTTTCTGACGCATTTATCGTCTTTGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCttttt                                                                                <  2:169842/141‑1 (MQ=255)
                                                            tCCAATTTTTTCGCAGTTTAACTTTTCCGACGCTTTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCCACATCTTCGTCTTGGTAGCTTTTTa                                                                               <  2:275429/141‑1 (MQ=255)
                                                               aaTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAGat                                                                            >  1:601870/1‑141 (MQ=255)
                                                                aTTTTTTCGCATTTTAACTTTTCCGACTCATTTATCGTCTTTGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAata                                                                           <  2:60394/141‑1 (MQ=255)
                                                                aTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGCCTAGGTAGCTTTTTAAatt                                                                           >  2:643259/1‑140 (MQ=255)
                                                                  tttttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCAACGACTTAGTGGCttgttcactctg                                                                         >  1:281953/1‑134 (MQ=255)
                                                                     ttCGCAGTTTAAGTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGCTATGTTGTCTTATCAGTCTTATCCGGGTAGTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcg                                                                      <  2:7720/141‑1 (MQ=255)
                                                                     ttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcg                                                                      >  1:562147/1‑141 (MQ=255)
                                                                      tCGCAGTTTAACTTTTCCGACGCATTTCTCGTCTTTGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcgc                                                                     <  2:108892/141‑1 (MQ=255)
                                                                          gtaGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCTTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCtt                                                                   >  2:741596/3‑141 (MQ=255)
                                                                          gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCtt                                                                   >  1:112848/1‑141 (MQ=255)
                                                                          gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTTTTGGTAGCTTTTTAAATATGGCGCtt                                                                   >  1:739197/1‑141 (MQ=255)
                                                                          gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTACCTTTTTACATATGTCCCtt                                                                   >  2:437527/1‑141 (MQ=255)
                                                                               ttAACTTTTCCGACGCATTTATCGTCTTGGTAGTATAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCATCTTCGTCTTTGTACCTTTTTAAATATTTCGCTTCATaa                                                              >  2:130445/1‑140 (MQ=255)
                                                                                    ttttttgACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTGCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTaa                                                         <  2:202894/135‑1 (MQ=255)
                                                                                    ttttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCATCTTCGTCTTGGTAGCTTTTTAAATATGCCGCTTCGTATAGCaa                                                         >  2:551551/1‑141 (MQ=255)
                                                                                     tttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAAt                                                        <  2:93092/141‑1 (MQ=255)
                                                                                     tttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTCCATAGAGTAAt                                                        >  1:315783/1‑141 (MQ=255)
                                                                                        ccGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCt                                                     <  1:80306/141‑1 (MQ=255)
                                                                                             gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTCGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTtaa                                                >  2:584219/1‑141 (MQ=255)
                                                                                             gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTATGTcaa                                                >  2:113360/1‑141 (MQ=255)
                                                                                                  cagcgacTTAGTAGTAAAGATAGATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTcc                                           <  1:169204/135‑1 (MQ=255)
                                                                                                   aTCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCa                                          <  1:167888/141‑1 (MQ=255)
                                                                                                   aTCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAAGGTAATTATGTaatgttgca                                          >  1:439559/1‑134 (MQ=255)
                                                                                                    tCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTTTGTAAAGGTCCaa                                         >  1:395679/1‑141 (MQ=255)
                                                                                                      gTCTTGGTAGTAAAGATATATTGCATCAACGGTAGTGGCAATATATTCAAGGCAATCTGCCACGTCGTCCTTTTCATCGTCTTCTGCGTGGTAACTTTTTACATATGGCACTTCATGGAGGAAGTCTCTCAAGGTCCacgc                                       >  2:376928/1‑138 (MQ=255)
                                                                                                        cTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATtct                                     >  1:25164/1‑141 (MQ=255)
                                                                                                        cTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAAGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTCTTAACTATCGCGCTTCATCGAGTAACTCTGTAAACGTCCCATtct                                     >  2:343887/1‑141 (MQ=255)
                                                                                                         ttGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTAGTAGCTTTTTAAATATGTCGCTTCATACCGTACTTCTGTCAAGGTCCAATtctc                                    >  2:248530/1‑141 (MQ=255)
                                                                                                          tGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCCCCCCCCACATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCg                                   <  1:748407/141‑1 (MQ=255)
                                                                                                             tagtaAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGttt                                >  1:98527/1‑141 (MQ=255)
                                                                                                             tagtaAAGATATATTATCTTATCAGTACGGAGTATATTATTC‑‑CGCAAACAAACCTCCTCTTCCTCTTCATCCTCATCTTATTAGAAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCtttt                                <  1:351698/141‑1 (MQ=255)
                                                                                                               gtaAAGATATATTGTCTTATCGGTATGGTTAATCTATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCGCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATACTGTAATTCTGTAGAGGTCCAATTCTCGTTTTc                              <  2:665216/141‑1 (MQ=255)
                                                                                                               gtaAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGCCGCTTCATAGATTACTTCTGTAAAGGTCCAATTCTCATTTTc                              >  2:475975/1‑141 (MQ=255)
                                                                                                                taAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCa                             <  1:61401/141‑1 (MQ=255)
                                                                                                                taAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTGCATCCTCTTCGTCTTGGTAGCTTTTTAAATATTGCGCTTCATACAGTAATTCTGTAAATTTCCAATTTTCGTTTTct                             >  2:461621/1‑140 (MQ=255)
                                                                                                                     attgattatCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCt                        <  2:385204/137‑1 (MQ=255)
                                                                                                                     atatatTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATTGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCt                        <  2:432849/141‑1 (MQ=255)
                                                                                                                      tatatTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTc                       <  1:367326/141‑1 (MQ=255)
                                                                                                                        tagtatattatcAGTAGTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCAGCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCgg                     <  2:12119/138‑1 (MQ=255)
                                                                                                                         attatCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGt                    <  1:640448/141‑1 (MQ=255)
                                                                                                                         attatCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGt                    >  1:658956/1‑141 (MQ=255)
                                                                                                                         attatCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTAATCTTCTTCATCCTCTTCGTCTTGGTAGAGATTTAAGTATGGTAAGCCGGATACGAATTCTGTAAATGTCCAATTCTCGTTTTCATACCTCGGt                    <  2:163450/141‑1 (MQ=255)
                                                                                                                          ttatcttatcAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGta                   <  2:112848/141‑1 (MQ=255)
                                                                                                                          ttatcttatcAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGta                   <  1:531729/141‑1 (MQ=255)
                                                                                                                               tgatcAGTATTGTCAATATATTGAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATc              <  2:289913/139‑1 (MQ=255)
                                                                                                                                    aGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAcc         <  1:212466/141‑1 (MQ=255)
                                                                                                                                     gTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGCGTCATTCTGTAAAGCTCCAATTCTCGTTTTCATCCCTCTCTCTACTCTTTCCt        >  2:655632/1‑141 (MQ=255)
                                                                                                                                     gTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAACt        >  1:440878/1‑141 (MQ=255)
                                                                                                                                       aTTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGCCCAATTCTCGTTTTCCTCCCTCGGTATAATCTTACTTAt      >  1:641614/1‑141 (MQ=255)
                                                                                                                                         tGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCCATTCTCGTTTTCATACCTCGGTATAATCTTACATATCa    >  1:30329/1‑141 (MQ=255)
                                                                                                                                          gTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTACCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGATCCAATTCTCGTTTTCATACATCGGTATAATCTTACCTATCAc   >  2:614010/1‑141 (MQ=255)
                                                                                                                                           tCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCAcc  >  1:96374/1‑141 (MQ=255)
                                                                                                                                           tCAATATATTCAAGGCAATCTGCCTCCAACCGTGCGTCATCTGTTTCTTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATAAcc  >  1:326910/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                              
CTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCACC  >  CP000731/15275‑15552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: