Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | USA300TCH1516_ALE | 722,264 | (A)8→7 | coding (235/798 nt) | fepC → | Ferric enterobactin transport ATP‑binding protein FepC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 722,257 | 0 | A | . | 92.6% | 100.7 / 0.6 | 27 | coding (228/798 nt) | fepC | Ferric enterobactin transport ATP‑binding protein FepC |
Reads supporting (aligned to +/- strand): ref base A (0/2); new base . (18/7); total (18/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.03e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGTGACGTCAATCATTGGTCCTAACGGCTGCGGGAAATCTACTTTGCTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGCAAAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAGGATTTGGTAGATTAACTGCTGAGGATAAGAAAGAAATTGAT > USA300TCH1516_ALE/722119‑722392 | aGTGACGTCAATCATTGGTCCTAACGGCTGCGGGAAATCTACTTTGCTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATATACCATCTACGAAAGAGATTGCaca > 1:158584/1‑139 (MQ=255) cAATCATTGGTCCTAACGGCTGCGGGAAATCTACTTTGCTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGCaaaaaaatagc < 1:246355/141‑5 (MQ=255) tGGTCCTAACGGCTGCGGGAAATCTACTTTGCTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTa > 1:177389/1‑141 (MQ=255) cTGCGGGAAATCTACTTTGCTAAAGGCAGTGTAACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAAGAGCCATTTTACCTCAATCACCt < 2:117099/141‑1 (MQ=255) gAAATCTACTGTGCGAAAGGCATTGTCACGTTTATTGGAAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTa < 2:71824/141‑1 (MQ=255) cTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTaa > 1:132560/1‑141 (MQ=255) cTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTaa > 1:212863/1‑141 (MQ=255) aaaGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCGTTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACt < 1:122339/141‑1 (MQ=255) aGGCATTGACACGATTAGTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGt < 1:167071/141‑1 (MQ=255) ggCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGtt > 1:203636/1‑141 (MQ=255) ggCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGtt > 1:239613/1‑141 (MQ=255) ttGTAACGTTTATTGCGAGGTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTgggg < 2:75586/141‑1 (MQ=255) tGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGa > 2:72928/1‑141 (MQ=255) aCGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTa > 2:215481/1‑141 (MQ=255) ttATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGttt > 1:169751/1‑141 (MQ=255) aTTGGCAGTTAACGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTAGGCAACTAGTTTCa > 2:149712/1‑141 (MQ=255) aTTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCa > 2:149706/1‑141 (MQ=255) ttGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCat < 1:3158/141‑1 (MQ=255) ggCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGATTAACTGTTAGGGATTTATTTTCatat > 2:30503/1‑141 (MQ=255) aaGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCa > 1:37553/1‑141 (MQ=255) tttttAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAg > 2:164912/1‑141 (MQ=255) tttttAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAg > 1:253677/1‑141 (MQ=255) tttttAGATGGGTAAAATATTCATACACAAACTACGAAACAGATTG‑AAAAAAAAGAGTCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAg < 2:138457/141‑1 (MQ=255) tgtgaGAAGGTGAAAATATTCAGATGCAATCTACGAAAGAGATTG‑AAAAAAAAGAGCCATTTTACCTAAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTGGTTTCATATGGTCGTTTTCCACATCAAAAAgg < 2:248830/137‑1 (MQ=255) ggTGAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCGTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAGGATTTGGtg > 2:141970/1‑140 (MQ=255) gAAAATATTCATACACAATCTACGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATAACCTGAATAAGCATATGGTTTAACCGTCGGGGAATTATTTTCATATGGTCGTTTCCCACATCAAAAAGGATTTGGCAgct > 2:200967/1‑139 (MQ=255) cGAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAGGATTTGGTAGATTAACTGCTGAGGATacgaaaaa > 2:9597/1‑139 (MQ=255) agAAAGAGATTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAGGATTTGGTAGATTAACTGCTGAGGATaagaaaga < 2:278796/140‑1 (MQ=255) gaTTGC‑AAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAGGATTTGGTAGATTAACTGCTGAGGATAAGAAAGAAattgat > 2:181188/1‑141 (MQ=255) | AGTGACGTCAATCATTGGTCCTAACGGCTGCGGGAAATCTACTTTGCTAAAGGCATTGTCACGTTTATTGGCAGTTAAAGAAGGCGAAGTATTTTTAGATGGTGAAAATATTCATACACAATCTACGAAAGAGATTGCAAAAAAAATAGCCATTTTACCTCAATCACCTGAAGTAGCAGATGGCTTAACTGTTGGGGAATTAGTTTCATATGGTCGTTTTCCACATCAAAAAGGATTTGGTAGATTAACTGCTGAGGATAAGAAAGAAATTGAT > USA300TCH1516_ALE/722119‑722392 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |