Sat May 25 08:59:15 2019

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -j 1 -o breseq_processes/17 -r /var/data/TCH1516_HM_ALE_referencePlusProkka_Jan2019.gbk /var/alemutpipe-outputs/good/SNFR_3_67_1_S178_S2001_L006_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_3_67_1_S178_S2001_L006_R2_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_3_67_1_S178_S2001_L008_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SNFR_3_67_1_S178_S2001_L008_R2_001.good.fq.gz