mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 701,380 | C→T | G72E (GGG→GAG) | nagC ← | DNA‑binding transcriptional dual regulator NagC |
| RA | 1,529,218 | C→T | intergenic (+2066/‑704) | yncH → / → ydcD | DUF5445 domain‑containing protein YncH/uncharacterized protein YdcD |
| JC JC | 1,642,200 | IS5 (+) +4 bp | coding (79‑82/90 nt) | ynfS → | Qin prophage; protein YnfS |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| MC JC | 2,801,828 | Δ10,193 bp | [nrdE]–[emrA] | [nrdE], nrdF, proV, proW, proX, ygaZ, ygaH, mprA, [emrA] | |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| JC | 3,815,859 | Δ82 bp | [rph] | [rph] | |
| RA | 4,037,265 | T→C | noncoding (6/76 nt) | alaT → | tRNA‑Ala |
| RA | 4,037,291 | T→C | noncoding (32/76 nt) | alaT → | tRNA‑Ala |
| RA | 4,037,308 | T→A | noncoding (49/76 nt) | alaT → | tRNA‑Ala |
| RA | 4,037,324 | A→T | noncoding (65/76 nt) | alaT → | tRNA‑Ala |
| RA | 4,037,326 | A→G | noncoding (67/76 nt) | alaT → | tRNA‑Ala |
| RA | 4,181,849 | G→T | R202L (CGT→CTT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423792–3424234 | 3424519–3424238 | 5–728 | 24 [10] | [15] 16 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374921 = | 116 (1.080) | 36 (0.490) | 9/194 | 2.0 | 25.0% | intergenic (+40/‑538) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377531 = | 136 (1.830) | intergenic (+220/+4) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 12 (0.110) | 57 (0.600) | 30/248 | 0.5 | 69.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 39 (0.410) | intergenic (‑500/‑66) | tfaE/pinE | e14 prophage; putative tail fiber assembly protein TfaE/e14 prophage; site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.110) | 76 (0.800) | 30/248 | 0.5 | 75.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 39 (0.410) | intergenic (‑483/‑83) | tfaE/pinE | e14 prophage; putative tail fiber assembly protein TfaE/e14 prophage; site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 2 (0.020) | 69 (0.660) | 36/272 | 0.4 | 98.6% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3428664 | 160 (1.490) | 62 (0.770) +35 bp |
18/210 | 1.0 | 34.1% | noncoding (99/1542 nt) | rrsD | 16S ribosomal RNA |
| ? | NC_000913 | = 4035603 | NA (NA) | noncoding (73/1542 nt) | rrsA | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 4037260 = | 0 (0.000) | 11 (0.140) +35 bp |
6/210 | 3.0 | 25.3% | noncoding (1/76 nt) | alaT | tRNA‑Ala |
| ? | NC_000913 | = 4175818 | 87 (0.810) | noncoding (65/76 nt) | thrT | tRNA‑Thr | |||||