Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,046,916 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,046,9160GC100.0% 599.4 / NA 253intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (138/115);  total (138/115)
*CP0425831,046,9170CG100.0% 598.2 / NA 253intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (138/115);  total (138/115)
*CP0425831,046,9180TA99.6% 600.8 / NA 253intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (138/114);  minor base G (0/1);  total (138/115)
Fisher's exact test for biased strand distribution p-value = 4.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 253 total aligned reads displayed.

CGGATGAATATCCAGGCCAACGCGACTCACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCAGCTGAGACTTGTTCCCTGCAAGAGCAGACTAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACGCTAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAAACTGAAAATCAGAATACCGCCACTTAATGCCAGCAATGG  >  CP042583/1046637‑1047197
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
cGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGa                                                                                                                                                                                                                                                                                  <  1:1402641/289‑1 (MQ=255)
cGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGa                                                                                                                                                                                                                                                                                  <  2:49769/289‑1 (MQ=255)
cGGATAATTATCCAGGCCAAGGCGTGCAACAGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGGCCCCGGGAGTGATGTTGCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGGGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGAGCCGCGTAATCCTACCCAGCTGATAAACGCGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGa                                                                                                                                                                                                                                                                                  <  2:1620901/289‑1 (MQ=255)
        tatCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCgaa                                                                                                                                                                                                                                                                          >  1:1258633/1‑289 (MQ=255)
          tCCAGGCCAACGCGTGACACCGGACGTCCAACTGGCGGAACCACCACTGTGGCTGTTGTAGCCGCCAACGAGAATGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATACTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAAACCTACCCAGCTGAGAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGa                                                                                                                                                                                                                                                                                  <  1:2218092/279‑1 (MQ=255)
               gCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAatat                                                                                                                                                                                                                                                                    >  2:805347/1‑288 (MQ=255)
               gCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATatc                                                                                                                                                                                                                                                                   >  2:1979363/1‑289 (MQ=255)
                    cgcgtgacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCa                                                                                                                                                                                                                                                              >  1:1475523/8‑289 (MQ=255)
                    cgcgtgacACCGGACGACCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCACCCa                                                                                                                                                                                                                                                              >  1:762679/8‑289 (MQ=255)
                       gtgacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGCCGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATg                                                                                                                                                                                                                                                            <  2:36454/284‑1 (MQ=255)
                       ggtacACCGGACGTCCCACGGGCGGAACACCCACTTTGGCTTTTTTGGCCGCCCACGCGAGTGATGTTCCCTGAAAGAGCAGTGAAACCAGAACCACAACGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATg                                                                                                                                                                                                                                                            <  2:557865/284‑1 (MQ=255)
                         gacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCg                                                                                                                                                                                                                                                          <  1:1435792/286‑1 (MQ=255)
                         gaaaCCGGACTGCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGACCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCCGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCg                                                                                                                                                                                                                                                          <  2:69542/285‑1 (MQ=255)
                                     cccACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAAAATTATCCATGCGGACAAAATGGgcg                                                                                                                                                                                                                                             >  1:602556/1‑289 (MQ=255)
                                         cTGGCGGAACCCCCCCTTTGGCTTGTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCgg                                                                                                                                                                                                                                         <  2:1216284/289‑1 (MQ=255)
                                                          ttGGCTTTTTTGGCCGCCCAGAGGAGTGATGTGCCCGTGAAGAGAAGGGAAACCAGAACCACAAAGAAGGCGAAAGTAAAAAACAGACGTGCAGGCGCCAGCCCCGCCATCATCGGGAACAAGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGgcagca                                                                                                                                                                                                                        <  2:1837536/289‑1 (MQ=255)
                                                                tttttAGCCGCCCAAGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGc                                                                                                                                                                                                                  <  1:1203774/289‑1 (MQ=255)
                                                                 ttttAGCCGCCCACGAGGGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCt                                                                                                                                                                                                                 <  1:490051/289‑1 (MQ=255)
                                                                 ttttAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCt                                                                                                                                                                                                                 <  1:566734/289‑1 (MQ=255)
                                                                              cgagagtgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAAc                                                                                                                                                                                                    <  2:2212098/280‑1 (MQ=255)
                                                                                    tgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACCAAATGAACGACGGAATGGCAATAGGCAGCAGAACCCGTGGGTTAACCAACAGcccc                                                                                                                                                                                              >  2:98358/4‑289 (MQ=255)
                                                                                         ttCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATAGCTTGGGTTAACCAACAGCCCCAGCa                                                                                                                                                                                          >  1:1062541/1‑288 (MQ=255)
                                                                                            ccTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGCATGGCAATAGGCAGCAGCACGCTTGGGTTAACACACAGccccagccccag                                                                                                                                                                                      >  2:415632/1‑289 (MQ=255)
                                                                                              tGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGaa                                                                                                                                                                                                                                       <  1:634232/238‑1 (MQ=255)
                                                                                                      cagtgaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCg                                                                                                                                                                            >  1:926249/7‑289 (MQ=255)
                                                                                                      cagtgaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCg                                                                                                                                                                            >  2:1515244/7‑289 (MQ=255)
                                                                                                         tgaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATgg                                                                                                                                                                                                                                    >  1:1453855/4‑230 (MQ=255)
                                                                                                                aGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACAAACAGCCCCAGCACCAGGAACATGGCGATTCGCgcca                                                                                                                                                                  >  2:1716045/1‑289 (MQ=255)
                                                                                                                       caAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGt                                                                                                                                                                                                            >  1:551041/1‑240 (MQ=255)
                                                                                                                       caAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGc                                                                                                                                                           >  2:1469176/1‑289 (MQ=255)
                                                                                                                               gCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATg                                                                                                                                                                                                                                                            <  1:807309/184‑1 (MQ=255)
                                                                                                                               gCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCCCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATAACATCCATGCGGCCAAAATGAGCGCCGGAATGGCACTGGGAAGCAGCCCGCTTGGGTTAACCAACAGCCCCAGCACACGGAACATGGCGATTTGCGCCCGCCAGCCGAGGCCg                                                                                                                                                    >  2:1289322/1‑288 (MQ=255)
                                                                                                                                    aTTAAAGAACAGACGTGCATTCTCCCGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGaaa                                                                                                                                              <  1:415632/289‑1 (MQ=255)
                                                                                                                                         aGAACAAACGTGAAATCGCCAGCCCCGCCATCACCGGGAAAACGGCC‑AAGATGATTGGCACCGCGCCGCGGAATCCTACCCAGCTGATAAACACTCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGTGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGc                                                                                                                                                      <  2:2097552/276‑1 (MQ=255)
                                                                                                                                             ccaaCGTGCATCCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCACGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAgg                                                                                                                                     <  2:1062541/286‑1 (MQ=255)
                                                                                                                                             cAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAgg                                                                                                                                     >  1:992390/1‑289 (MQ=255)
                                                                                                                                                      tgcccccATCCCCCCCATCCTCGGAAACACGGCA‑CGGATGATTGGCACAGCGCCGGCTAAACCTACCCAGCTGATAAACCCGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAg                                                                                                                            <  2:2020078/284‑1 (MQ=255)
                                                                                                                                                      aTTCCCCAGCCCCGCCCTCATCGGGAACGCGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAg                                                                                                                            <  2:2187666/289‑1 (MQ=255)
                                                                                                                                                       ttCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGGTGATTGACACCGCGCCGCGTAATCATACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGCAGGGGAGCAATTCAGCAAATACCGAAAGGTGACGGGCGAAGAATATCATCGATGCGGACAAAATGAGACACGGAATGGCATGATGGAGCAATTCTCTGGGGTTAACCAACAGCCCCAGCCCCAGGAGCTACGCAGTTTGCCCCAGCAAGGCGTGGCCGTCCAACTTTTGCAGTCTGCAGTata                                                                                                                           >  2:1920206/1‑287 (MQ=255)
                                                                                                                                                          tcCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCgga                                                                                                                        >  1:1233675/1‑288 (MQ=255)
                                                                                                                                                          tcCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAAGAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCAAGCCAGGCGAGGGCGCCGAAATTTTGCAGGTAGCCGTAGCGGt                                                                                                                        >  2:1098208/1‑289 (MQ=255)
                                                                                                                                                                  cGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATa                                                                                                                >  2:887888/1‑289 (MQ=255)
                                                                                                                                                                   gCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTACTCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAg                                                                                                               <  1:1213561/289‑1 (MQ=255)
                                                                                                                                                                   gCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAg                                                                                                               <  1:2008596/289‑1 (MQ=255)
                                                                                                                                                                    ccATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAg                                                                                                                            >  1:2061036/1‑275 (MQ=255)
                                                                                                                                                                    ccATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAg                                                                                                                            <  2:2061036/275‑1 (MQ=255)
                                                                                                                                                                        catcGGGAACACCGCC‑AGGAGGATTGGAACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGAAAATACCGAAAGGGGACGGGTGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGa                                                                                                          <  2:66004/289‑1 (MQ=255)
                                                                                                                                                                         atcGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCg                                                                                                           >  2:831654/1‑287 (MQ=255)
                                                                                                                                                                            gggAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAAc                                                                                                                                                                                                    <  1:330178/195‑1 (MQ=255)
                                                                                                                                                                              gAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTAcc                                                                                                     <  1:100289/288‑1 (MQ=255)
                                                                                                                                                                                 cacGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGa                                                                                                                                    >  2:630645/1‑254 (MQ=255)
                                                                                                                                                                                   cGGCCAAGGATGGTAGGGACCCCGCCGCTTAGACGTACCCAGCTGAAAAACACGCTCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCcagca                                                                                                <  2:784333/289‑1 (MQ=255)
                                                                                                                                                                                    ggCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGa                                                                                              >  2:88203/1‑289 (MQ=255)
                                                                                                                                                                                       c‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGaaaa                                                                                           <  1:1852424/289‑1 (MQ=255)
                                                                                                                                                                                            atgatTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCGGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCg                                                                                        <  1:594517/288‑1 (MQ=255)
                                                                                                                                                                                            atgatTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAAc                                                                                          <  1:688371/286‑1 (MQ=255)
                                                                                                                                                                                            atgatTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAAc                                                                                          <  2:145000/286‑1 (MQ=255)
                                                                                                                                                                                            atgatTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCg                                                                                        <  1:483490/288‑1 (MQ=255)
                                                                                                                                                                                            atgatTGGCACCGCGCCGCGTAAACCTGCCCAGCGGATAAACACGCGATCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCg                                                                                        <  2:641884/288‑1 (MQ=255)
                                                                                                                                                                                             tgatTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGca                                                                                      <  1:831654/289‑1 (MQ=255)
                                                                                                                                                                                                    cACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATa                                                                                <  1:24852/288‑1 (MQ=255)
                                                                                                                                                                                                      ccgcgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATacac                                                                             <  2:46997/289‑1 (MQ=255)
                                                                                                                                                                                                      ccgcgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATacac                                                                             <  1:88203/289‑1 (MQ=255)
                                                                                                                                                                                                      ccgcgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATacac                                                                             <  1:1979363/289‑1 (MQ=255)
                                                                                                                                                                                                      ccgcgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATacac                                                                             <  1:1515244/289‑1 (MQ=255)
                                                                                                                                                                                                        gcgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACAcc                                                                            >  2:495410/1‑288 (MQ=255)
                                                                                                                                                                                                         cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGc                                                                                                                                                                                                                  <  2:132703/153‑1 (MQ=255)
                                                                                                                                                                                                         cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAAc                                                                                          >  2:549244/1‑273 (MQ=255)
                                                                                                                                                                                                         cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCg                                                                           >  1:1317554/1‑288 (MQ=255)
                                                                                                                                                                                                         cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTGGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGACTGGCGCCAGCCAGGCGAGGCCGTCGAAATCTTGCAGGATGCCGTAGCGGTTGCGAAATGGGCGCTTACCCAGCAGACAACCGCAAAGCAACACCg                                                                           >  2:1240635/1‑288 (MQ=255)
                                                                                                                                                                                                              cgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGca                                                                                      >  1:844633/1‑272 (MQ=255)
                                                                                                                                                                                                              cgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAAGAGGGCGATTACCCAGCCGAAACCCGCACAGATACACCTCCAGaa                                                                     >  2:1679789/1‑289 (MQ=255)
                                                                                                                                                                                                                        cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAgg                                                                                                                                     <  2:1859147/215‑1 (MQ=255)
                                                                                                                                                                                                                        cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATa                                                                                >  1:266410/1‑268 (MQ=255)
                                                                                                                                                                                                                           aGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGTGATTTGCGCCAGCAAGGCGAGGCCGTCGAAATTTTGCAGGAGGCCGTAGCGGTTGCGAATAGGGCGCTTACCCAGGCGACAACCGCACCGAGACACCCCCAGTAAACCGCTCCCtt                                                         >  2:265629/1‑288 (MQ=255)
                                                                                                                                                                                                                           aGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCtt                                                         >  1:1599936/1‑288 (MQ=255)
                                                                                                                                                                                                                             cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTccc                                                      >  1:2208084/1‑288 (MQ=255)
                                                                                                                                                                                                                             cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTcc                                                       >  2:317080/1‑288 (MQ=255)
                                                                                                                                                                                                                             cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCa                                                      >  1:1496962/1‑289 (MQ=255)
                                                                                                                                                                                                                             cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCa                                                      >  1:31818/1‑289 (MQ=255)
                                                                                                                                                                                                                              tGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAACGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCATCAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCa                                                      <  1:1920206/288‑1 (MQ=255)
                                                                                                                                                                                                                                aTAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAgc                                                    >  2:1115444/1‑288 (MQ=255)
                                                                                                                                                                                                                                  aaaCACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCa                                                 >  1:1946259/1‑289 (MQ=255)
                                                                                                                                                                                                                                   aaCACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCag                                                <  1:2248724/289‑1 (MQ=255)
                                                                                                                                                                                                                                   aaCACGAGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCag                                                <  1:2023471/289‑1 (MQ=255)
                                                                                                                                                                                                                                       cgcgCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAAt                                                                                                                 >  2:268268/1‑220 (MQ=255)
                                                                                                                                                                                                                                          gcgcccGCAGGGTGAAACCGGGGAAGGGGAGCAAGCCAGCAAATAGCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCAACAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTa                                          <  2:31818/283‑1 (MQ=255)
                                                                                                                                                                                                                                          gcTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTaa                                         >  1:1343734/1‑289 (MQ=255)
                                                                                                                                                                                                                                          gcTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGAAGTTaa                                         >  2:219289/1‑289 (MQ=255)
                                                                                                                                                                                                                                           cTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATa                                                                   >  1:1842252/1‑262 (MQ=255)
                                                                                                                                                                                                                                              aCGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTaatgag                                     <  1:1662006/289‑5 (MQ=255)
                                                                                                                                                                                                                                               cGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTaatgaga                                    >  1:791754/1‑284 (MQ=255)
                                                                                                                                                                                                                                                    aTTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATc                               >  1:548024/1‑289 (MQ=255)
                                                                                                                                                                                                                                                               agaaagtgaacAATCCAGCGAACACCGACAGGGAACGGGCGAAGAATATCAACCATTCGGACAAAATGAGCGCCGGAAAGGCAATAGGCAGCAGATCGCTTGGGTTAACCAGCAGCCCCAGCACCAGGAGCATGTCGATTTGCCCCAGCCAGGCGAGGCCGTCGAAATTTTACAGGATGCCGTAGCGGTTGCGAAGAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCACTAGTTAATGAGAAAATCAGAATGCCGc                     <  2:762679/278‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGt                                                                                                                                                                                                            <  1:52453/98‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGAt                                                                                                                                                                          <  2:1637697/132‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGAt                                                                                                                                                                          >  1:1637697/1‑132 (MQ=255)
                                                                                                                                                                                                                                                                              cAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCaa     <  2:1502515/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                              cAGAAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCaa     <  1:2132941/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 cAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGc           <  2:233285/280‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
CGGATGAATATCCAGGCCAACGCGACTCACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCAGCTGAGACTTGTTCCCTGCAAGAGCAGACTAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCC‑AGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACGCTAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATGAGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAAACTGAAAATCAGAATACCGCCACTTAATGCCAGCAATGG  >  CP042583/1046637‑1047197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A