Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,455,246 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,455,2460AT99.6% 541.7 / NA 228intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (113/114);  minor base G (0/1);  total (113/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,455,2470GC99.6% 528.7 / NA 228intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (113/113);  total (113/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,455,2480CG99.6% 543.1 / NA 228intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (113/114);  minor base T (0/1);  total (113/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 228 total aligned reads displayed.

ATTATTCCGGGTATTCTATTTGTACTGATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTAGTAGCGTACTGTTCGGTGTAGCCGCATTCAGCACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGAGTGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCAGCTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCAGTGCAGCTGGCGGCATTTTACAGCTCGGCGTTAGCGTCATGAGTGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTGGCTAACTTTGTTAT  >  CP042583/1454973‑1455526
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                      
attattCCGGGTATTCTATTTGTACTGATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCt                                                                                                                                                                                                                                                                           >  2:250713/1‑289 (MQ=255)
attattCCGGGTATTCTATTTGTACTGATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCt                                                                                                                                                                                                                                                                           >  2:366749/1‑289 (MQ=255)
                        cTGATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaa                                                                                                                                                                                                                                                   >  1:334987/1‑289 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAACTATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCACTTATTACA‑GTATGGGCTCGTTGGTCTGTTGCTTTATTTTTGCCGCTCCACTGaaaaaa                                                                                                                                                                                                                                                 >  2:1296718/1‑289 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaaaa                                                                                                                                                                                                                                                 >  1:2101337/1‑289 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaaaa                                                                                                                                                                                                                                                 >  1:1130691/1‑289 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaaaa                                                                                                                                                                                                                                                 >  1:1010737/1‑289 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaaaa                                                                                                                                                                                                                                                 <  2:2064747/289‑1 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaaaa                                                                                                                                                                                                                                                 >  2:1235489/1‑289 (MQ=255)
                          gATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACAGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGAACTAACGaaaaaa                                                                                                                                                                                                                                                 >  2:2068934/1‑289 (MQ=255)
                           aTCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGTCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGaaaaaaa                                                                                                                                                                                                                                                >  2:276933/1‑289 (MQ=255)
                               cGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGt                                                                                                                                                                                                                                            <  2:334987/289‑1 (MQ=255)
                               cGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGt                                                                                                                                                                                                                                            <  2:434206/289‑1 (MQ=255)
                                    ctGCTGTTGAAAAGCAAATACCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAACTGAACAGCAAGCCGTTAGTCTGGCTGGAAGGTGCTTAATCG‑GTACTGTTCGGTGTAGCCGCGTTCTTGACCTTTTATGTGATTGTGGGGGGGATGCCCAAATATGCGATGGCTTTTGCGGGTATGTCAGAAGCTGAGACATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGAACTACTGAAAAAAATGGTCCGGc                                                                                                                                                                                                                                       <  2:1131240/288‑1 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTTCCGCACTACTGCAAAAAATGGTCCGGc                                                                                                                                                                                                                                       >  1:1781417/1‑288 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGTACTACTGAAAAAAATGTTCCGGc                                                                                                                                                                                                                                       >  2:1864268/1‑288 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGc                                                                                                                                                                                                                                       <  2:1045358/288‑1 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGc                                                                                                                                                                                                                                       >  1:827398/1‑288 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGc                                                                                                                                                                                                                                       >  2:425951/1‑288 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGc                                                                                                                                                                                                                                       >  1:626489/1‑288 (MQ=255)
                                     tGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGc                                                                                                                                                                                                                                       >  1:252886/1‑288 (MQ=255)
                                        tGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCAt                                                                                                                                                                                                                                   <  1:1372150/289‑1 (MQ=255)
                                        tGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCAt                                                                                                                                                                                                                                   <  2:827398/289‑1 (MQ=255)
                                          ttGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCa                                                                                                                                                                                                                                    >  1:230330/1‑286 (MQ=255)
                                          ttGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCACAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCa                                                                                                                                                                                                                                    >  2:2018942/1‑286 (MQ=255)
                                            gAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCAt                                                                                                                                                                                                                                   >  1:1586347/1‑285 (MQ=255)
                                                aGCAAATTCCCCAGCCAGTTGGTGGAGGACAGCGGAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCTTCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTa                                                                                                                                                                                                                           <  2:626489/289‑1 (MQ=255)
                                                  cAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAAt                                                                                                                                                                                                                         >  2:969057/1‑289 (MQ=255)
                                                   aaaTTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAAt                                                                                                                                                                                                                         <  1:1636305/288‑1 (MQ=255)
                                                    aaTTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCATGACTGAAAAAAGTGGTCCGGCCCATCTGGGCTAATGt                                                                                                                                                                                                                       >  2:399725/1‑289 (MQ=255)
                                                       tCCCCCGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGGGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAtt                                                                                                                                                                                                                    <  1:2252744/289‑1 (MQ=255)
                                                       tCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAtt                                                                                                                                                                                                                    <  1:969057/289‑1 (MQ=255)
                                                       tCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAtt                                                                                                                                                                                                                    <  1:406373/289‑1 (MQ=255)
                                                                       ggACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGca                                                                                                                                                                                                    <  1:366749/289‑1 (MQ=255)
                                                                       ggACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGc                                                                                                                                                                                                     <  1:1539312/288‑1 (MQ=255)
                                                                       ggACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGc                                                                                                                                                                                                     <  1:1615215/288‑1 (MQ=255)
                                                                       ggACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGc                                                                                                                                                                                                     <  1:49840/288‑1 (MQ=255)
                                                                             cAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATa                                                                                                                                                                                              >  1:1264220/1‑289 (MQ=255)
                                                                                  tAACTAATGAATTACCGTAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAAcag                                                                                                                                                                                          <  1:2178618/288‑1 (MQ=255)
                                                                                   aaCTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCAAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAAcagc                                                                                                                                                                                         <  2:2211007/288‑1 (MQ=255)
                                                                                    aCTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAtt                                                                                                                                                                                                                    >  2:1988931/1‑260 (MQ=255)
                                                                                    aCTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAtt                                                                                                                                                                                                                    <  1:1988931/260‑1 (MQ=255)
                                                                                     cTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCg                                                                                                                                                                                                                                                               >  1:890721/1‑216 (MQ=255)
                                                                                     cTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACagcagc                                                                                                                                                                                      <  2:520415/289‑1 (MQ=255)
                                                                                         tGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTc                                                                                                                                                                                                                                           <  1:2156527/232‑1 (MQ=255)
                                                                                               aCCGGAAATGAACAGCAAACCGTTAGGTGGGCTGGAAGGTT‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTAc                                                                                                                                                                            <  2:230330/289‑1 (MQ=255)
                                                                                                    aaaTTAACGGAAAACCGTTGGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTa                                                                                                                                                                       <  2:1689303/289‑1 (MQ=255)
                                                                                                                 aCCGTTAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTg                                                                                                                                                          <  1:1235489/289‑1 (MQ=255)
                                                                                                                      tAGTCTGGCTGGAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGtgtg                                                                                                                                                     <  1:549589/289‑1 (MQ=255)
                                                                                                                          ctggctggAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCa                                                                                                                                                   <  1:250713/287‑1 (MQ=255)
                                                                                                                             gctggAAGGTG‑TTTCATCGGTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTAccc                                                                                                                                                                    >  1:1284739/1‑267 (MQ=255)
                                                                                                                                         tttcatcggTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGc                                                                                                                                                                                                           <  1:1435587/209‑1 (MQ=255)
                                                                                                                                            catcggTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTAt                                                                                                                                <  1:2018942/284‑1 (MQ=255)
                                                                                                                                                 gTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGtt                                                                                                                           >  1:1696159/1‑289 (MQ=255)
                                                                                                                                                 gTACTGTTCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGtt                                                                                                                           >  2:1730445/1‑289 (MQ=255)
                                                                                                                                                       ttCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTAtt                                                                                                                                                                                                                    <  2:159468/194‑1 (MQ=255)
                                                                                                                                                       ttCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATTTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTccca                                                                                                                      >  2:727806/1‑285 (MQ=255)
                                                                                                                                                       ttCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTg                                                                                                                                                                         >  2:1487642/1‑237 (MQ=255)
                                                                                                                                                       ttCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTg                                                                                                                                                                         <  1:1487642/237‑1 (MQ=255)
                                                                                                                                                       ttCGGTGTAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTctca                                                                                                                      >  1:1253894/1‑285 (MQ=255)
                                                                                                                                                            tgtAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTctcagca                                                                                                                   >  2:1799319/1‑280 (MQ=255)
                                                                                                                                                              tAGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTggg                                                                                                                                                                                                                              >  2:884167/1‑177 (MQ=255)
                                                                                                                                                               aGCCGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACCGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTgg                                                                                                              <  2:1109713/288‑1 (MQ=255)
                                                                                                                                                                 ccGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAAcagcag                                                                                                                                                                                       >  2:1959276/1‑213 (MQ=255)
                                                                                                                                                                 ccGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAAcagcag                                                                                                                                                                                       <  1:1959276/213‑1 (MQ=255)
                                                                                                                                                                 ccGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTggcg                                                                                                            <  1:725610/288‑1 (MQ=255)
                                                                                                                                                                  cGCATTCTCGACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAAAGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTggcgg                                                                                                           <  1:409542/288‑1 (MQ=255)
                                                                                                                                                                     attctcgaCCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCCCTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCCACCTGTACCCTTCTCCACTGGTGTTCAATGCCGGAGCCTTTGTTCTCGGTTTCTCCGCCGCTggccggctt                                                                                                       >  2:490244/8‑283 (MQ=255)
                                                                                                                                                                      ttctcgaCCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCATTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCCCCACTGGTTTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCAttt                                                                                                      >  1:876930/7‑289 (MQ=255)
                                                                                                                                                                      ttctcgaCCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCa                                                                                                         <  1:1042728/280‑1 (MQ=255)
                                                                                                                                                                      ttctcgaCCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCAttt                                                                                                      >  1:2073561/7‑289 (MQ=255)
                                                                                                                                                                        ctcgaCCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAAcag                                                                                                                                                                                          >  2:991858/5‑203 (MQ=255)
                                                                                                                                                                        ctcgaCCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAAcag                                                                                                                                                                                          <  1:991858/199‑1 (MQ=255)
                                                                                                                                                                                           gtggtgtggATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGTTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGtttcggtca                                                                                 >  2:1533510/1‑282 (MQ=255)
                                                                                                                                                                                              gtgtggATGCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCAtg                                                                               >  2:2106989/1‑288 (MQ=255)
                                                                                                                                                                                                      gCCCAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGttt                                                                      >  2:131385/1‑289 (MQ=255)
                                                                                                                                                                                                        ccAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGttttt                                                                    >  2:224691/1‑289 (MQ=255)
                                                                                                                                                                                                        ccAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCCCGGCGTTTCGGTCATGTCAGAGttttt                                                                    >  1:1851202/1‑289 (MQ=255)
                                                                                                                                                                                                         cAAATATGCGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGttttt                                                                    >  1:767652/1‑288 (MQ=255)
                                                                                                                                                                                                                 cGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGtttcggt                                                                                   <  1:388071/265‑6 (MQ=255)
                                                                                                                                                                                                                 cGATGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCaaaa                                                            >  1:1201640/1‑288 (MQ=255)
                                                                                                                                                                                                                    tGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAaaag                                                           >  2:579912/1‑286 (MQ=255)
                                                                                                                                                                                                                    tGGCTTTTGCTGGTATGTCAGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAaaag                                                           <  1:579912/286‑1 (MQ=255)
                                                                                                                                                                                                                                 tatgtcagAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCAc                                            <  1:1150853/281‑1 (MQ=255)
                                                                                                                                                                                                                                 tatgtcagAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCAc                                            <  1:425951/281‑1 (MQ=255)
                                                                                                                                                                                                                                          atcatagtgcatAAAATCCATCTCTTATTACA‑GTATGGGCTCGTTGTTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTACCTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTAtt                                     <  2:1437377/275‑1 (MQ=255)
                                                                                                                                                                                                                                             tGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACACTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTtata                                 <  1:138731/287‑1 (MQ=255)
                                                                                                                                                                                                                                               aGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGGTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATatgat                             >  1:1844400/1‑289 (MQ=255)
                                                                                                                                                                                                                                                ggaaTTATAATCCATCTC‑TATTTCAGGTATTGGCTCGTTGGTCTGTGTCTTTATTTTGGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTTCCCTGCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATatgat                             <  2:1851202/285‑1 (MQ=255)
                                                                                                                                                                                                                                                 gCATTAAAAACCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATatgatga                           >  2:1167602/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      aaaaaCCATCTCTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAACTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGt                                        >  2:1410092/1‑271 (MQ=255)
                                                                                                                                                                                                                                                              tctcTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCATCAGCTGTCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCTAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTg                >  2:1364393/1‑287 (MQ=255)
                                                                                                                                                                                                                                                              tctcTTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTg                >  2:441758/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                 ctTATTACA‑GTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTGGCTaa           <  2:206065/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 ctTATGTCA‑GTTTGGGCTAGTTGGTATGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCAGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGAAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTGGCTaa           <  2:1268073/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           gTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTggcg                                                                                                            <  2:1894137/183‑1 (MQ=255)
                                                                                                                                                                                                                                                                           gTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAACGTCTCCAGTATTTATATGACGAGGGGTGGACTGGCTAACTTTGTTAt  >  2:1259882/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           gTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCAc                                            <  2:754089/247‑1 (MQ=255)
                                                                                                                                                                                                                                                                           gTATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTGGCTAACTTTGTTAt  >  1:149189/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            tATGGGCTCGTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCTCAGCAGCTGGCGGCATTTTACAGCTCGGCGTTTCGGTCATGTCAGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTtata                                 >  2:103350/1‑257 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                      
ATTATTCCGGGTATTCTATTTGTACTGATCACGCTGATGCTGTTGAAAAGCAAATTCCCCAGCCAGTTGGTGGACGCCAGCGTAACTAATGAATTACCGCAAATGAACAGCAAACCGTTAGTCTGGCTGGAAGGTG‑TTAGTAGCGTACTGTTCGGTGTAGCCGCATTCAGCACCTTTTATGTGATTGTGGTGTGGATGCCCAAATATGCGATGGCTTTTGCTGGTATGAGTGAAGCTGAGGCATTAAAAACCATCTCTTATTACA‑GTATGGGCAGCTTGGTCTGTGTCTTTATTTTTGCCGCACTACTGAAAAAAATGGTCCGGCCCATCTGGGCTAATGTATTTAACTCTGCACTGGCAACAATAACAGCAGCCATTATCTACCTGTACCCTTCTCCACTGGTGTGCAATGCCGGAGCCTTTGTTATCGGTTTCAGTGCAGCTGGCGGCATTTTACAGCTCGGCGTTAGCGTCATGAGTGAGTTTTTTCCCAAAAGCAAAGCCAAAGTCACCAGTATTTATATGATGATGGGTGGACTGGCTAACTTTGTTAT  >  CP042583/1454973‑1455526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A