Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,046,916 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,046,9160GC100.0% 519.8 / NA 221intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (127/94);  total (127/94)
*CP0425831,046,9170CG100.0% 524.7 / NA 221intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (127/94);  total (127/94)
*CP0425831,046,9180TA99.6% 519.7 / NA 221intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (127/93);  minor base G (0/1);  total (127/94)
Fisher's exact test for biased strand distribution p-value = 4.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 221 total aligned reads displayed.

CGGATGAATATCCAGGCCAACGCGACTCACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCAGCTGAGACTTGTTCCCTGCAAGAGCAGACTAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACGCTAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAAACTGAAAATCAGAATACCGCCACTTAATGCCAGCAATGG  >  CP042583/1046637‑1047197
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                        
cGGATGAATATCCAGGCCAACCCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAAAGCAGTGAAACCAAAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGa                                                                                                                                                                                                                                                                                   <  1:807181/289‑1 (MQ=255)
  gATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAAACCTACCCAGCTGATAAACACGCGCCCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAAAACCGAAAGAGGACg                                                                                                                                                                                                                                                                                 >  1:570319/1‑289 (MQ=255)
    agataagccACGCCACCCCGAGACACCGGAGGGCCCACGTGCGGAGCGACCATTTTGGCTTTGTGGGACGCCCACGAGGGTGACGTTCCCAGCAAGAGCAGTGAAACCAGACCCACAACGAAGGCGACATTAATGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCCAAAGCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACAGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACgg                                                                                                                                                                                                                                                                                <  2:1086422/281‑1 (MQ=255)
             aGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGAAAATACCGAAAGGGGACGGGCGAAGAata                                                                                                                                                                                                                                                                      >  1:350340/1‑289 (MQ=255)
               gccgaccgtttaagccGTACGTCCCACTGACGGAACAACCACTTTGGCTTTTTTAGCCGCACACGAGAGTGATGTTCCCGGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAat                                                                                                                                                                                                                                                                       <  2:1809563/272‑1 (MQ=255)
               gCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCCCACGCCGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAAAACCGAAAGGGGACGGGCGAAGAataac                                                                                                                                                                                                                                                                    >  2:716728/1‑287 (MQ=255)
                ccAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATatca                                                                                                                                                                                                                                                                   >  1:930571/1‑289 (MQ=255)
                   acgcgtgacACCGGACGTCCCACTGGCGGAACCACCACTTTGGC‑TTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATCAACACGCGCTCACGCAGATTGAACCCGCGGAAGGGGAGCAACCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCa                                                                                                                                                                                                                                                               >  1:1086501/9‑289 (MQ=255)
                    cgcgtgacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACgg                                                                                                                                                                                                                                                                                <  2:907800/265‑1 (MQ=255)
                    cgcgtgacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACgg                                                                                                                                                                                                                                                                                >  1:907800/8‑272 (MQ=255)
                    cgcgtgacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGAAGGGCGAAGAATACCACCCa                                                                                                                                                                                                                                                               >  2:155111/8‑289 (MQ=255)
                      cgtgacACCGGACGGCCCACTTGCCGAACCACCACATTGGCGTTTTTAGCGGCCCAAGAAAGGGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAATAACAGACGTGCATTCGCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATg                                                                                                                                                                                                                                                             <  2:1646224/284‑1 (MQ=255)
                         gacACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCgg                                                                                                                                                                                                                                                          >  1:1253329/3‑289 (MQ=255)
                                gACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAAt                                                                                                                                                                                                                                                   >  2:943990/1‑289 (MQ=255)
                                gACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAAt                                                                                                                                                                                                                                                   >  1:911906/1‑289 (MQ=255)
                                      ccACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑Agcgc                                                                                                                                                                                                                                            <  1:70704/289‑1 (MQ=255)
                                          tGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACAGTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGa                                                                                                                                                                                                                                        <  2:322487/289‑1 (MQ=255)
                                               gAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGc                                                                                                                                                                                                                                   >  2:690756/1‑289 (MQ=255)
                                                             gCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGa                                                                                                                                                                                                                      >  1:1911042/1‑288 (MQ=255)
                                                                            cacgagagtgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCa                                                                                                                                                                                                      >  2:225819/12‑289 (MQ=255)
                                                                              cgcgagtgatGTTCCCGTCAAGAGCAGTGACACCAGAACCACAAAAAAGGCGCCATTACAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAAGACGGCCAGGCTGATTGGCACCGCGCCGCGTAATCCCACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAAc                                                                                                                                                                                                    <  2:1849308/280‑1 (MQ=255)
                                                                              cgagagtgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAAc                                                                                                                                                                                                    <  2:1140289/280‑1 (MQ=255)
                                                                                   gtgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGA‑GATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGccc                                                                                                                                                                                               <  1:135006/284‑1 (MQ=255)
                                                                                    tgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGcc                                                                                                                                                                                                                                           <  2:263003/241‑1 (MQ=255)
                                                                                    tgatGTTCCCTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGcccc                                                                                                                                                                                              >  1:1044722/4‑289 (MQ=255)
                                                                                     gatGTTCCCGGAAAGAGAAGTGAAACCAAAAACCCAAAGAGAGCGAAATTAAAGGACAGACGTGCATTCACCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAAAACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGcccc                                                                                                                                                                                              <  2:983927/286‑1 (MQ=255)
                                                                                           cccTGCAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCa                                                                                                                                                                                       >  2:1774197/1‑289 (MQ=255)
                                                                                                cAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACCGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCt                                                                                                                                                                                                                 <  2:373903/258‑1 (MQ=255)
                                                                                                cAAGAGCAGTGAAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCt                                                                                                                                                                                                                 >  1:373903/1‑258 (MQ=255)
                                                                                                        gtgaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGACGGAATGGCAGTAGGCAGCAGATCGCTTGGGTTAACCAACAGCCACAGCACCAGGAACCTGGCGAt                                                                                                                                                                          >  1:1006177/5‑289 (MQ=255)
                                                                                                         ggaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCCTTCCCCCGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGAt                                                                                                                                                                          <  2:791812/285‑1 (MQ=255)
                                                                                                          gaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACTGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGAt                                                                                                                                                                          <  1:140592/285‑1 (MQ=255)
                                                                                                          gaaaCCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGAttt                                                                                                                                                                        >  1:255553/3‑289 (MQ=255)
                                                                                                             cacAGAACCACAAAGACGAGGAGATGAAAGAACAGACATGCATTCTCCAGCCCCGCCATCATCGGGAACAAGGCCAGGAGTATTGGCACCGGGCCGCGTAATCCGAGCCGAATGACAAGCGCGCGCTTAGGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATGCCGGATGGGGTCGGGAGAAGAAGATCCGCCAGGCGGACAAAATG‑AGCGCCGGAATGGTAAGAGGCGGCGGAGCGCTTGGGGTAACCAACAGCCCCGGCACGAGGGACATGGCGATTTgcg                                                                                                                                                                     <  2:510850/287‑1 (MQ=255)
                                                                                                                              ggCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCg                                                                                                                                                    >  1:1468588/1‑289 (MQ=255)
                                                                                                                                  aCATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGa                                                                                                                                                >  1:1608363/1‑289 (MQ=255)
                                                                                                                                  aCATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCGTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGACGcgcgcga                                                                                                                                                >  2:190775/1‑283 (MQ=255)
                                                                                                                                    aTTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGa                                                                                                                                                                                                                                                                                   >  1:402857/1‑157 (MQ=255)
                                                                                                                                      tAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAAtt                                                                                                                                            <  2:1675453/289‑1 (MQ=255)
                                                                                                                                                 cGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAgg                                                                                                                                     <  1:1683595/285‑1 (MQ=255)
                                                                                                                                                          tcCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAg                                                                                                                            >  1:1634031/1‑285 (MQ=255)
                                                                                                                                                          tcCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGt                                                                                                                        >  1:1247245/1‑289 (MQ=255)
                                                                                                                                                              gCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAACTTTGCAGGATGCCGTAGCGGCTGCg                                                                                                                    >  1:1221689/1‑289 (MQ=255)
                                                                                                                                                               ccccGCCATCATCGGGAACACGGACAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGCCGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGCCGATTTCCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCgc                                                                                                                   >  1:893832/1‑288 (MQ=255)
                                                                                                                                                                cccGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAACCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGaa                                                                                                                  >  2:432616/1‑289 (MQ=255)
                                                                                                                                                                 ccGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAAt                                                                                                                 <  2:1755236/289‑1 (MQ=255)
                                                                                                                                                                  cGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATa                                                                                                                >  1:1744728/1‑289 (MQ=255)
                                                                                                                                                                    ccATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCCCCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAACAgg                                                                                                              >  2:628500/1‑289 (MQ=255)
                                                                                                                                                                         atcGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGTCGTAGCGGTTGCGAATAGGGCGAt                                                                                                         >  2:29937/1‑289 (MQ=255)
                                                                                                                                                                              gAACACGGCCAGGATGTTTGGAACGGAGCGCAGGAATCGTACCCAGCCGATAAACACGGGCACACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGAAAATGCCGAAAGGGGACGGGCGAAGAATATCATCCACGCGGACAAAATG‑AGCGCCGGAATGGAAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAGCATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTAcc                                                                                                     <  2:1732433/288‑1 (MQ=255)
                                                                                                                                                                              gAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTAcc                                                                                                     <  2:1482031/288‑1 (MQ=255)
                                                                                                                                                                                            tgatTGGCACCGCGACGCGTAATCCTACCCCGATGAGAAACAGGCGCACACGAGCATAGAAAGCGGGGAGAGCGAAAAATGCAGCAAATTCCGAAAAGAGAAGGTCTAAGAATATGAGCGAAGCGGA‑AAAATGAAGCGTGGGAAAGGCCCTAGGCAGCAGATCGATTGGGTTAAGCAACAGCCCCCGCACCAGGACAATGGTGATATGCGCCACCCAGGCGGGGTCGTCGAAATTTTGCCGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGca                                                                                      <  2:1637731/289‑1 (MQ=255)
                                                                                                                                                                                             gatTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGca                                                                                      <  2:109547/288‑1 (MQ=255)
                                                                                                                                                                                                tGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGACAGGCGAGGCCGCCGACATTTTGCCGGATGCCGTAGCGGTTGCGAATAGGGCGCTTACCCCGCCAAAAACCGCACAgc                                                                                  >  2:1461772/1‑288 (MQ=255)
                                                                                                                                                                                                   cACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATa                                                                                <  1:225819/288‑1 (MQ=255)
                                                                                                                                                                                                     ccgcgccgcgTAAGCCGCCCCAGATGATAAACACGCGCTCACGAAGATTGAAACCGCGAAAGGGGAGAAATCAAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATacac                                                                             <  2:101647/289‑1 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAGGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCg                                                                           >  1:248058/1‑288 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGGGAATAGGGCGATTACCCAGCAGAAAACCGCACAGGTACACCg                                                                           >  2:51859/1‑288 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCg                                                                           >  2:1253786/1‑288 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCg                                                                           >  1:679319/1‑288 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCg                                                                           >  2:1166395/1‑288 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGAAACACCg                                                                           >  2:1423753/1‑288 (MQ=255)
                                                                                                                                                                                                        cgccgcgTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAAACAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTGTCATGATGCCGTAGAGGTTGCGAATAGGGCGATTTCCAAGACGAAAACCGCACAGAAacacac                                                                           >  2:399298/1‑286 (MQ=255)
                                                                                                                                                                                                              gTAATCCTACCCAGCTGATACACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGaa                                                                     <  1:822184/288‑1 (MQ=255)
                                                                                                                                                                                                                  tCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCg                                                                <  1:945629/289‑1 (MQ=255)
                                                                                                                                                                                                                     tACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTa                                                             <  1:690756/289‑1 (MQ=255)
                                                                                                                                                                                                                       cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGCCGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGAGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCACAGCACCAGGAACGTGGCGATGTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCATGATGCCGTAGCGGCTGCGAATAGGGATACTAACCAGCAGCAAAACGACCAGATACACCGCCAGAACACCGCAAcc                                                           >  2:293962/1‑289 (MQ=255)
                                                                                                                                                                                                                       cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGt                                                                                                                        >  1:476315/1‑228 (MQ=255)
                                                                                                                                                                                                                       cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGt                                                                                                                        <  2:476315/228‑1 (MQ=255)
                                                                                                                                                                                                                       cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCTATTACCCAGCTGAAAACCGCCCAGTGCCACAGCCAGAATAACGCTAc                                                            >  2:1712807/1‑288 (MQ=255)
                                                                                                                                                                                                                       cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTa                                                             >  1:1278726/1‑287 (MQ=255)
                                                                                                                                                                                                                       cccAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGACGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACAGCCAGAAAAACGGTAc                                                            >  2:832760/1‑288 (MQ=255)
                                                                                                                                                                                                                          aGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTTGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCtt                                                         >  2:1130329/1‑288 (MQ=255)
                                                                                                                                                                                                                          aGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAg                                                                                                               <  1:985726/234‑1 (MQ=255)
                                                                                                                                                                                                                            cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGGAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCa                                                      >  2:728266/1‑289 (MQ=255)
                                                                                                                                                                                                                            cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAAc                                                                                                                                                                                                    >  1:142568/1‑147 (MQ=255)
                                                                                                                                                                                                                            cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTcc                                                       >  2:104709/1‑288 (MQ=255)
                                                                                                                                                                                                                            cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCa                                                      >  1:288701/1‑289 (MQ=255)
                                                                                                                                                                                                                            cTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGAGCCAGCCAGGCGAGGCCGTCGAACTTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCCGCCGAAGACCGCACAGATACACCGCCAGAATACAGCCAACTTCCa                                                      >  2:453310/1‑289 (MQ=255)
                                                                                                                                                                                                                             tGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTc                                                        <  1:1867007/286‑1 (MQ=255)
                                                                                                                                                                                                                             tGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTc                                                        <  1:155111/286‑1 (MQ=255)
                                                                                                                                                                                                                                tacacacGCGCTCACGCAGATTAAACCCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCGCAGATACACCGCCAGAATACCGCTACCTTCCAgcgc                                                  <  1:1810745/286‑1 (MQ=255)
                                                                                                                                                                                                                                tAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGGAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAgcgc                                                  <  1:728266/289‑1 (MQ=255)
                                                                                                                                                                                                                                      cgcgCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCagtagt                                            >  1:643084/1‑289 (MQ=255)
                                                                                                                                                                                                                                             aCGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTaatgag                                     <  1:1112115/289‑5 (MQ=255)
                                                                                                                                                                                                                                                       aaaCCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCACCAGAAGACCGCCACCTTCCCGCGCAGTAGTTAATGAGAAAATCAGaa                           >  2:1546994/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         aCCGCGGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGGAGGTAATGAGAAAATCAGaaaa                         >  2:1518014/1‑287 (MQ=255)
                                                                                                                                                                                                                                                            gcgGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCg                      <  1:1502685/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             cgGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGa                                                                                                                                    >  2:1612366/1‑178 (MQ=255)
                                                                                                                                                                                                                                                             cgGAAGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATGTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGACTAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGCATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAAAACCg                      >  2:1341007/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              ggAGGGGGAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGc                     <  2:248058/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                    ggAGCAATCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACtt                <  2:1121526/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aTCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAAc                                                                                          >  1:109218/1‑207 (MQ=255)
                                                                                                                                                                                                                                                                          aTCCAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCa         >  1:1757163/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                            ccAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCa      <  1:1518014/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            ccAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCa      <  1:1784759/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             cAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGCAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCaa     >  2:1150563/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                             cAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCaa     <  1:653670/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             cAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCaa     <  1:1161266/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             cAGCAAATACCGAAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAATGAGAAAATCAGAATACCGCCACTTAATGCCAGCaa     <  2:1366940/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                        
CGGATGAATATCCAGGCCAACGCGACTCACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCAGCTGAGACTTGTTCCCTGCAAGAGCAGACTAACCAGAACCACAAAGAAGGCGACATTAAAGAACAGACGTGCATTCTCCAGCCCCGCCATCATCGGGAACACGGCCAGGATGATTGGCACCGCGCCGCGTAATCCTACCCAGCTGATAAACACGCGCTCACGCAGATTGAAACCGCGGAAGGGGAGCAATCCAGCAAATACGCTAAGGGGACGGGCGAAGAATATCATCCATGCGGACAAAATG‑AGCGCCGGAATGGCAATAGGCAGCAGATCGCTTGGGTTAACCAACAGCCCCAGCACCAGGAACATGGCGATTTGCGCCAGCCAGGCGAGGCCGTCGAAATTTTGCAGGATGCCGTAGCGGTTGCGAATAGGGCGATTACCCAGCAGAAAACCGCACAGATACACCGCCAGAATACCGCTACCTTCCAGCGCAGTAGTTAAACTGAAAATCAGAATACCGCCACTTAATGCCAGCAATGG  >  CP042583/1046637‑1047197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A